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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JRR | 9879 | 2024-04-06 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.94 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2024-04-08 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7LiA | 23365 | 2024-04-05 | 2021-01-26 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6279 | 767 | 5 | 0 | 27 | 0 | 0 | logfile |
✘ | 8CYi | 27078 | 2024-04-08 | 2022-05-23 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14621 | 932 | 3 | 0 | 2 | 0 | 7191 | logfile |
✘ | 7EYA | 31380 | 2024-04-05 | 2021-05-30 | 3.77 | 3.98 | — | 4.0 | 0.008 | 1.01 | 0.0 | 0.04 | 16.97 | 0.01 | 2.142 | 8.20 | 0.00 | 7.6 | 92.2 | 0.2 | -2.30 | 0.60 | 0.77 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4629 | 576 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 7JMG | 22393 | 2024-04-08 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.38 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7WSU | 32767 | 2024-04-07 | 2022-02-01 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9440 | 1202 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 5GMK | 9525 | 2024-04-11 | 2016-07-14 | 3.4 | 3.52 | — | 3.5 | 0.012 | 1.25 | 16.0 | 0.07 | 16.17 | 0.01 | 1.378 | 19.35 | 2.77 | 7.7 | 91.2 | 1.0 | -3.71 | 0.47 | 0.53 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75273 | 8026 | 51 | 404 | 981 | 0 | 0 | logfile |
✘ | 7TF6 | 25863 | 2024-04-17 | 2022-01-06 | 2.15 | 2.26 | — | 2.3 | 0.002 | 0.51 | 0.0 | 0.04 | 16.47 | 0.00 | 2.048 | 4.68 | 1.34 | 3.7 | 96.3 | 0.0 | 0.26 | 0.48 | 0.71 | 5.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43272 | 5400 | 36 | 0 | 24 | 0 | 120 | logfile |
✘ | 8DZQ | 27805 | 2024-04-06 | 2022-08-08 | 2.82 | 2.18 | 2.79 | 2.1 | 0.019 | 0.79 | 0.0 | 0.11 | 13.38 | 0.00 | 2.244 | 6.40 | 0.23 | 6.2 | 93.8 | 0.0 | -0.46 | 0.74 | 0.71 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8342 | 1100 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7JSS | 22459 | 2024-04-16 | 2020-08-15 | 3.7 | 4.06 | 4.04 | 3.8 | 0.007 | 0.93 | 0.0 | 0.08 | 22.22 | 0.01 | 2.171 | 15.39 | 0.60 | 12.4 | 86.1 | 1.5 | -4.45 | 0.81 | 0.78 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144890 | 5749 | 54 | 4655 | 0 | 0 | 0 | logfile |
✘ | 8APC | 15565 | 2024-04-10 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 59 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8JLR | 36405 | 2024-04-06 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8934 | 1130 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VFS | 31958 | 2024-04-10 | 2021-09-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19764 | 2383 | 8 | 0 | 41 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2024-04-07 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.96 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 8CST | 26970 | 2024-04-08 | 2022-05-13 | 2.85 | 2.57 | 2.87 | 2.7 | 0.005 | 0.67 | 0.0 | 0.39 | 19.72 | 0.01 | 1.938 | 2.58 | 0.00 | 1.4 | 98.6 | 0.0 | 1.18 | 0.69 | 0.78 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66351 | 5810 | 39 | 889 | 41 | 0 | 0 | logfile |
✘ | 7SSN | 25410 | 2024-04-17 | 2021-11-11 | 3.2 | 3.58 | 3.37 | 3.3 | 0.007 | 0.83 | 0.0 | 0.04 | 23.48 | 0.01 | 2.222 | 5.45 | 0.61 | 9.3 | 90.5 | 0.1 | -5.01 | 0.83 | 0.84 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145435 | 5602 | 54 | 4735 | 0 | 0 | 0 | logfile |
✘ | 8FNT | 29323 | 2024-04-17 | 2022-12-28 | 2.52 | 2.49 | 2.40 | 2.6 | 0.010 | 1.80 | 0.0 | 0.11 | 19.93 | 0.03 | 1.042 | 23.04 | 10.57 | 9.0 | 89.8 | 1.3 | -2.16 | 0.63 | 0.74 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43868 | 5490 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HG6 | 34736 | 2024-04-06 | 2022-11-13 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7259 | 593 | 6 | 0 | 60 | 0 | 0 | logfile |
✘ | 8C4T | 16428 | 2024-04-07 | 2023-01-04 | 3.23 | 3.32 | 3.18 | 3.3 | 0.003 | 0.58 | 2.0 | 0.05 | 16.97 | 0.00 | 2.148 | 8.51 | 0.36 | 2.9 | 97.1 | 0.0 | 0.76 | 0.79 | 0.84 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10459 | 1268 | 3 | 12 | 1 | 0 | 0 | logfile |