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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7W77 | 32341 | 2024-04-08 | 2021-12-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12051 | 1424 | 7 | 0 | 30 | 0 | 0 | logfile |
✘ | 7Y6i | 33641 | 2024-04-06 | 2022-06-20 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8176 | 938 | 8 | 0 | 37 | 6 | 0 | logfile |
✘ | 3JC7 | 6536 | 2024-04-16 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2024-04-11 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.007 | 0.93 | 0.0 | 0.05 | 13.75 | 0.01 | 2.021 | 26.55 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 7LWY | 23560 | 2024-04-15 | 2021-03-02 | 4.0 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.06 | 13.34 | 0.00 | 2.150 | 13.02 | 0.18 | 8.9 | 91.1 | 0.0 | -2.13 | 0.61 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103460 | 6645 | 10 | 0 | 0 | 0 | 51395 | logfile |
✘ | 6NR3 | 0488 | 2024-04-12 | 2019-01-22 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25180 | 3232 | 8 | 0 | 196 | 0 | 0 | logfile |
✘ | 7XJ3 | 33218 | 2024-04-10 | 2022-04-14 | 3.54 | 3.75 | 3.55 | 3.7 | 0.019 | 1.03 | 0.0 | 0.04 | 16.43 | 0.01 | 2.242 | 12.56 | 6.79 | 8.8 | 91.2 | 0.0 | -3.52 | 0.69 | 0.84 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18493 | 2428 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 6WHR | 21673 | 2024-04-11 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.23 | 0.0 | 0.07 | 17.34 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✘ | 7EJ8 | 31156 | 2024-04-06 | 2021-04-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1100 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2024-04-06 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V7N | 31775 | 2024-04-12 | 2021-08-21 | 2.9 | 3.77 | — | 3.2 | 0.005 | 0.62 | 0.0 | 0.05 | 13.98 | 0.00 | 2.171 | 6.62 | 0.00 | 5.4 | 94.4 | 0.1 | 0.11 | 0.89 | 0.87 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25430 | 3101 | 42 | 0 | 85 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2024-04-08 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2024-04-11 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.73 | 0.00 | 1.956 | 17.39 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✘ | 7YDQ | 33756 | 2024-04-05 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.006 | 0.83 | 0.0 | 0.04 | 17.50 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7CH9 | 30372 | 2024-04-09 | 2020-07-05 | 3.5 | 3.92 | — | 3.8 | 0.005 | 0.82 | 0.0 | 0.04 | 18.11 | 0.00 | 2.032 | 18.63 | 10.34 | 9.6 | 90.4 | 0.0 | -4.56 | 0.69 | 0.78 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15978 | 2126 | 19 | 0 | 10 | 0 | 0 | logfile |
✘ | 6oMF | 20090 | 2024-04-14 | 2019-04-18 | 3.26 | 3.79 | — | 3.7 | 0.012 | 1.03 | 1.0 | 0.06 | 19.65 | 0.01 | 1.800 | 9.63 | 12.34 | 7.2 | 92.6 | 0.2 | -4.28 | 0.70 | 0.72 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30251 | 3616 | 10 | 92 | 3 | 0 | 0 | logfile |
✘ | 7M6P | 23703 | 2024-04-08 | 2021-03-26 | 3.28 | 3.97 | 3.27 | 3.8 | 0.008 | 1.27 | 5.0 | 0.08 | 12.69 | 0.01 | 2.293 | 5.19 | 0.00 | 3.1 | 96.9 | 0.0 | 0.26 | 0.78 | 0.79 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14650 | 1800 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 7JY8 | 22524 | 2024-04-14 | 2020-08-29 | 2.4 | 2.54 | — | 2.5 | 0.015 | 1.94 | 6.0 | 0.10 | 19.73 | 0.00 | 2.168 | 1.17 | 7.58 | 3.1 | 96.7 | 0.2 | -2.00 | 0.62 | 0.71 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46728 | 2964 | 20 | 37 | 18 | 0 | 23368 | logfile |
✘ | 6VFi | 21173 | 2024-04-06 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6R90 | 4764 | 2024-04-16 | 2019-04-02 | 4.5 | 4.77 | — | 4.6 | 0.008 | 0.88 | 0.0 | 0.06 | 22.92 | 0.01 | 2.107 | 4.11 | 0.24 | 3.1 | 96.6 | 0.3 | -1.12 | 0.76 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40070 | 1944 | 12 | 290 | 0 | 0 | 18802 | logfile |