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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8FL8 | 29270 | 2024-04-16 | 2022-12-21 | 4.2 | 4.73 | 3.73 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 14.24 | 0.00 | 1.962 | 16.11 | 0.05 | 5.7 | 94.1 | 0.2 | -0.48 | 0.84 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38784 | 5098 | 32 | 0 | 10 | 0 | 0 | logfile |
✘ | 8iUN | 35727 | 2024-04-12 | 2023-03-24 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24285 | 2318 | 71 | 0 | 128 | 0 | 0 | logfile |
✘ | 8QEC | 18351 | 2024-04-10 | 2023-08-31 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17802 | 1101 | 6 | 0 | 12 | 0 | 8699 | logfile |
✘ | 8G5H | 29743 | 2024-04-09 | 2023-02-13 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15875 | 1887 | 19 | 0 | 42 | 0 | 0 | logfile |
✘ | 8G4o | 29728 | 2024-04-09 | 2023-02-10 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17353 | 2094 | 20 | 0 | 39 | 0 | 0 | logfile |
✘ | 8JYo | 36728 | 2024-04-17 | 2023-07-03 | 3.2 | 3.48 | 3.07 | 3.2 | 0.005 | 0.60 | 0.0 | 0.05 | 14.11 | 0.00 | 2.061 | 5.57 | 0.00 | 3.6 | 96.4 | 0.0 | 0.32 | 0.77 | 0.77 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34233 | 4193 | 23 | 0 | 76 | 0 | 0 | logfile |
✘ | 8V6V | 43002 | 2024-04-16 | 2023-12-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37004 | 1673 | 14 | 294 | 4 | 0 | 17362 | logfile |
✘ | 8J6Z | 36021 | 2024-04-17 | 2023-04-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43924 | 3964 | 38 | 0 | 263 | 0 | 0 | logfile |
✘ | 8TP9 | 41470 | 2024-04-09 | 2023-08-04 | 3.1 | 3.33 | 3.17 | 3.4 | 0.020 | 1.82 | 7.0 | 0.11 | 10.91 | 0.01 | 2.334 | 2.44 | 0.00 | 1.9 | 98.1 | 0.0 | 0.64 | 0.71 | 0.76 | 3.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17118 | 2142 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 8TJX | 41313 | 2024-04-06 | 2023-07-24 | 2.44 | 3.10 | 2.65 | 2.9 | 0.006 | 0.64 | 0.0 | 0.04 | 24.81 | 0.01 | 1.872 | 12.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.85 | — | 2.9 | 0.007 | 0.61 | 0.0 | 0.04 | 24.05 | 0.01 | 1.838 | 11.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.84 | 0.86 | — | 7839 | 0 | 2 | 365 | 27 | 0 | 0 | logfile |
✘ | 8iBZ | 35350 | 2024-04-07 | 2023-02-10 | 3.04 | 3.25 | 3.07 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 23.46 | 0.00 | 2.190 | 9.49 | 0.29 | 4.3 | 95.6 | 0.1 | 0.68 | 0.73 | 0.74 | 1.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10273 | 817 | 3 | 180 | 1 | 0 | 0 | logfile |
✘ | 8UHi | 42281 | 2024-04-16 | 2023-10-09 | 2.35 | 2.20 | 2.40 | 2.2 | 0.004 | 0.71 | 0.0 | 0.04 | 17.49 | 0.01 | 1.205 | 13.93 | 1.84 | 3.8 | 96.2 | 0.0 | -0.14 | 0.74 | 0.78 | 5.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37192 | 4576 | 40 | 0 | 16 | 904 | 0 | logfile |
✘ | 8C8H | 16476 | 2024-04-16 | 2023-01-20 | 3.84 | 4.03 | 3.97 | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 14.85 | 0.01 | 2.105 | 7.26 | 4.29 | 6.6 | 93.4 | 0.0 | -3.34 | 0.82 | 0.73 | 1.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41296 | 4915 | 27 | 63 | 5 | 61 | 0 | logfile |
✔ | 8TJU | 41311 | 2024-04-07 | 2023-07-24 | 3.46 | 4.75 | 3.48 | 3.4 | 0.006 | 0.67 | 0.0 | 0.04 | 25.59 | 0.01 | 1.874 | 27.33 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.86 | — | 3.4 | 0.008 | 0.70 | 0.0 | 0.04 | 24.91 | 0.01 | 1.784 | 28.62 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.94 | 0.91 | — | 8771 | 0 | 2 | 409 | 27 | 0 | 0 | logfile |
✘ | 8GED | 29966 | 2024-04-06 | 2023-03-06 | 3.5 | 3.89 | 3.70 | 3.9 | 0.003 | 0.48 | 0.0 | 0.04 | 12.40 | 0.00 | 2.251 | 7.07 | 0.00 | 1.4 | 98.6 | 0.0 | 1.82 | 0.71 | 0.78 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6505 | 946 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8B3i | 15829 | 2024-04-16 | 2022-09-16 | 3.5 | 3.84 | 3.57 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 13.76 | 0.00 | 1.270 | 6.02 | 0.00 | 7.5 | 92.5 | 0.0 | -2.21 | 0.83 | 0.81 | 3.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40377 | 2537 | 8 | 0 | 3 | 0 | 20180 | logfile |
✘ | 8i9G | 35270 | 2024-04-06 | 2023-02-06 | 3.2 | 3.67 | 3.09 | 3.6 | 0.005 | 0.67 | 0.0 | 0.05 | 16.41 | 0.00 | 2.213 | 4.97 | 4.97 | 6.6 | 93.4 | 0.0 | -3.28 | 0.72 | 0.83 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6507 | 778 | 9 | 0 | 13 | 0 | 0 | logfile |
✘ | 8PPU | 17816 | 2024-04-10 | 2023-07-10 | 3.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19649 | 2376 | 9 | 35 | 7 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2024-04-08 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6R0Y | 4700 | 2024-04-16 | 2019-03-13 | 3.9 | 3.89 | — | 3.9 | 0.009 | 1.08 | 0.0 | 0.06 | 10.27 | 0.01 | 2.169 | 5.26 | 0.31 | 7.3 | 92.7 | 0.0 | -4.22 | 0.84 | 0.84 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40169 | 5845 | 28 | 0 | 3 | 0 | 0 | logfile |