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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8J5Z | 35996 | 2024-04-12 | 2023-04-24 | 4.75 | 4.34 | 4.69 | 4.2 | 0.002 | 0.47 | 0.0 | 0.04 | 12.56 | 0.00 | 2.224 | 6.20 | 3.96 | 5.1 | 94.9 | 0.0 | -0.77 | 0.80 | 0.75 | — | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 11.52 | 0.00 | 2.211 | 9.83 | 0.00 | 5.7 | 94.3 | 0.0 | -0.97 | 1.35 | 0.81 | 0.75 | — | 24856 | 3056 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 8DAN | 27271 | 2024-04-10 | 2022-06-13 | 4.74 | 5.06 | 4.76 | 5.0 | 0.003 | 0.53 | 0.0 | 0.04 | 13.83 | 0.00 | 1.929 | 10.23 | 0.00 | 4.5 | 95.5 | 0.0 | -0.75 | 0.65 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68968 | 4472 | 24 | 0 | 12 | 0 | 33968 | logfile |
✔ | 8CTJ | 26992 | 2024-04-05 | 2022-05-15 | 4.74 | 4.27 | 4.78 | 5.3 | 0.005 | 0.92 | 0.0 | 0.05 | 14.67 | 0.01 | 2.233 | 6.13 | 0.00 | 4.6 | 95.4 | 0.0 | -0.72 | 0.43 | 0.48 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 14.72 | 0.00 | 2.098 | 15.69 | 0.00 | 5.8 | 94.2 | 0.0 | 0.16 | 1.85 | 0.50 | 0.59 | — | 3312 | 401 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TNM | 26014 | 2024-04-10 | 2022-01-21 | 4.74 | 3.56 | — | 3.5 | 0.007 | 1.08 | 0.0 | 0.06 | 12.01 | 0.01 | 2.214 | 5.88 | 0.86 | 2.6 | 97.0 | 0.5 | -1.48 | 0.68 | 0.68 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 12.69 | 0.00 | 2.107 | 14.47 | 0.00 | 4.6 | 95.4 | 0.0 | 0.22 | 1.80 | 0.69 | 0.69 | — | 19448 | 2486 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 8PWL | 17994 | 2024-04-08 | 2023-07-20 | 4.73 | 5.25 | 4.85 | 4.8 | 0.002 | 0.51 | 0.0 | 0.04 | 13.55 | 0.00 | 2.250 | 5.28 | 0.00 | 2.0 | 98.0 | 0.0 | -0.12 | 0.83 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12266 | 1541 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EF1 | 9043 | 2024-04-11 | 2018-08-15 | 4.73 | 3.61 | — | 4.2 | 0.009 | 0.99 | 0.0 | 0.05 | 12.32 | 0.01 | 2.040 | 7.26 | 0.00 | 14.5 | 85.5 | 0.0 | -5.20 | 0.59 | 0.78 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.10 | 0.00 | 2.117 | 11.98 | 0.05 | 7.8 | 92.2 | 0.0 | -2.14 | 1.69 | 0.60 | 0.80 | — | 23658 | 3294 | 20 | 0 | 6 | 0 | 0 | logfile |
✘ | 8S90 | 40233 | 2024-04-09 | 2023-03-27 | 4.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15323 | 2096 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 8CDV | 16596 | 2024-04-17 | 2023-02-01 | 4.73 | 3.73 | 4.59 | 3.7 | 0.009 | 1.44 | 2.0 | 0.11 | 24.69 | 0.02 | 1.187 | 13.24 | 3.68 | 3.0 | 96.0 | 0.9 | -1.91 | 0.67 | 0.66 | — | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 23.46 | 0.00 | 2.081 | 16.47 | 0.11 | 2.4 | 97.4 | 0.2 | 0.34 | 1.23 | 0.66 | 0.61 | — | 43593 | 2094 | 19 | 1258 | 0 | 0 | 0 | logfile |
✔ | 7R0C | 14221 | 2024-04-06 | 2022-02-01 | 4.73 | 5.24 | 5.06 | 5.1 | 0.005 | 0.91 | 1.0 | 0.05 | 13.19 | 0.01 | 2.100 | 26.54 | 0.14 | 6.1 | 93.9 | 0.0 | -0.89 | 0.64 | 0.73 | — | 5.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.25 | 0.00 | 2.185 | 18.60 | 0.14 | 5.0 | 95.0 | 0.0 | -0.42 | 0.47 | 0.64 | 0.72 | — | 6816 | 875 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6Y92 | 10732 | 2024-04-09 | 2020-03-06 | 4.73 | 5.03 | — | 4.9 | 0.006 | 0.77 | 0.0 | 0.06 | 14.34 | 0.00 | 2.265 | 7.43 | 0.77 | 3.7 | 96.3 | 0.0 | -0.68 | 0.59 | 0.71 | — | 4.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.27 | 0.00 | 2.188 | 10.59 | 0.00 | 5.9 | 94.1 | 0.0 | -1.35 | 0.65 | 0.61 | 0.77 | — | 9497 | 1210 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6DiD | 7896 | 2024-04-17 | 2018-05-23 | 4.71 | 5.51 | — | 4.7 | 0.014 | 1.61 | 0.0 | 0.10 | 15.54 | 0.01 | 0.718 | 10.44 | 1.83 | 2.4 | 97.6 | 0.0 | 1.29 | 0.72 | 0.51 | — | 4.7 | 0.004 | 0.69 | 0.0 | 0.04 | 11.02 | 0.00 | 1.792 | 51.13 | 0.53 | 7.2 | 92.8 | 0.0 | 0.29 | 0.97 | 0.81 | 0.67 | — | 34674 | 3009 | 54 | 0 | 147 | 0 | 9465 | logfile |
✘ | 6SiH | 10210 | 2024-04-16 | 2019-08-09 | 4.7 | 5.01 | — | 4.7 | 0.005 | 0.54 | 0.0 | 0.03 | 12.61 | 0.00 | 1.931 | 8.52 | 0.00 | 5.9 | 94.1 | 0.0 | -1.62 | 0.89 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37310 | 4880 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NSU | 12577 | 2024-04-15 | 2021-03-08 | 4.7 | 3.48 | 4.74 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 14.51 | 0.00 | 1.833 | 11.03 | 3.66 | 4.9 | 95.0 | 0.1 | -1.84 | 0.58 | 0.49 | — | 2.4 | 0.003 | 0.66 | 0.0 | 0.05 | 12.88 | 0.00 | 1.674 | 14.98 | 0.16 | 4.1 | 95.9 | 0.0 | -0.91 | 2.57 | 0.60 | 0.53 | — | 36070 | 2410 | 6 | 0 | 0 | 0 | 17527 | logfile |
✔ | 5N8Y | 3602 | 2024-04-11 | 2017-02-24 | 4.7 | 4.76 | — | 4.7 | 0.017 | 2.39 | 6.0 | 0.08 | 7.59 | 0.01 | 0.788 | 16.57 | 0.00 | 4.2 | 94.4 | 1.4 | -1.65 | 0.65 | 0.64 | — | 4.7 | 0.003 | 0.79 | 0.0 | 0.04 | 5.73 | 0.00 | 2.234 | 3.43 | 0.00 | 9.5 | 90.4 | 0.0 | -1.95 | 3.82 | 0.74 | 0.79 | — | 23514 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 4V1W | 2788 | 2024-04-14 | 2014-10-02 | 4.7 | 4.69 | — | 4.7 | 0.020 | 2.45 | 172.0 | 0.17 | 18.97 | 0.01 | 2.533 | 7.94 | 7.67 | 3.0 | 96.5 | 0.6 | -2.40 | 0.74 | 0.84 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.57 | 0.00 | 2.213 | 17.43 | 0.69 | 3.0 | 97.0 | 0.0 | 1.92 | 2.68 | 0.75 | 0.79 | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZAL | 6905 | 2024-04-08 | 2018-02-07 | 4.7 | 4.44 | — | 3.8 | 0.008 | 1.44 | 1.0 | 0.07 | 15.07 | 0.01 | 2.215 | 19.06 | 0.97 | 16.1 | 83.2 | 0.7 | -5.19 | 0.87 | 0.74 | — | 3.8 | 0.003 | 0.84 | 0.0 | 0.05 | 15.04 | 0.01 | 2.110 | 26.45 | 0.00 | 13.4 | 86.3 | 0.2 | -2.86 | 0.84 | 0.84 | 0.61 | — | 12346 | 1389 | 3 | 58 | 0 | 0 | 0 | logfile |
✔ | 7QE5 | 13930 | 2024-04-07 | 2021-12-01 | 4.7 | 4.93 | 4.36 | 4.7 | 0.013 | 2.06 | 17.0 | 0.11 | 14.37 | 0.02 | 2.209 | 6.87 | 1.14 | 4.8 | 95.0 | 0.3 | -2.59 | 0.65 | 0.66 | — | 4.8 | 0.003 | 0.64 | 0.0 | 0.04 | 12.94 | 0.01 | 2.016 | 11.33 | 0.00 | 4.5 | 95.4 | 0.1 | 0.60 | 1.14 | 0.64 | 0.68 | — | 11652 | 740 | 2 | 0 | 0 | 0 | 5932 | logfile |
✔ | 3J6E | 5895 | 2024-04-07 | 2014-02-18 | 4.7 | 4.79 | — | 4.7 | 0.021 | 2.60 | 18.0 | 0.13 | 13.52 | 0.01 | 1.539 | 5.62 | 0.28 | 3.4 | 96.2 | 0.4 | -0.68 | 0.62 | 0.66 | — | 4.7 | 0.003 | 0.71 | 0.0 | 0.04 | 14.75 | 0.00 | 1.891 | 18.96 | 0.03 | 2.9 | 97.1 | 0.0 | 0.48 | 2.15 | 0.69 | 0.80 | — | 60984 | 7686 | 54 | 0 | 36 | 72 | 0 | logfile |
✔ | 7Q4V | 13818 | 2024-04-10 | 2021-11-02 | 4.7 | 6.40 | — | 5.9 | 0.007 | 1.12 | 8.0 | 0.06 | 14.76 | 0.01 | 2.129 | 8.21 | 1.01 | 4.3 | 95.6 | 0.2 | -2.14 | 0.77 | 0.74 | — | 5.9 | 0.003 | 0.72 | 0.0 | 0.05 | 13.40 | 0.00 | 2.108 | 21.31 | 0.05 | 4.5 | 95.5 | 0.0 | -0.56 | 1.77 | 0.76 | 0.76 | — | 19303 | 2520 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 7Y5C | 33616 | 2024-04-15 | 2022-06-16 | 4.7 | 4.41 | 4.64 | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 14.53 | 0.00 | 1.916 | 9.62 | 0.00 | 2.6 | 97.4 | 0.0 | 1.08 | 0.77 | 0.73 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.04 | 0.00 | 1.859 | 10.77 | 0.00 | 3.1 | 96.9 | 0.0 | 1.04 | 1.19 | 0.77 | 0.75 | — | 35993 | 4851 | 26 | 0 | 11 | 0 | 0 | logfile |