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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7E9F | 31030 | 2024-04-12 | 2021-03-04 | 4.0 | 4.14 | 3.17 | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 28.02 | 0.01 | 2.264 | 5.87 | 0.36 | 3.0 | 97.0 | 0.0 | -4.61 | 0.83 | 0.75 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 28.22 | 0.00 | 2.040 | 17.45 | 4.72 | 4.4 | 95.6 | 0.0 | -0.32 | 1.31 | 0.85 | 0.79 | — | 13279 | 1057 | 12 | 249 | 2 | 0 | 0 | logfile |
✔ | 7U5J | 26352 | 2024-04-07 | 2022-03-02 | 2.96 | 2.93 | 3.32 | 3.0 | 0.004 | 0.54 | 0.0 | 0.04 | 10.54 | 0.01 | 2.215 | 9.03 | 2.15 | 2.3 | 97.7 | 0.0 | 0.21 | 0.56 | 0.72 | 3.53 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 14.40 | 0.00 | 2.165 | 12.71 | 2.33 | 2.6 | 97.4 | 0.0 | 1.03 | 0.34 | 0.62 | 0.77 | 2.82 | 10804 | 1376 | 8 | 0 | 0 | 284 | 0 | logfile |
✔ | 6D7L | 7823 | 2024-04-07 | 2018-04-25 | 4.0 | 4.10 | 3.93 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 7.65 | 0.01 | 2.273 | 4.18 | 0.00 | 8.5 | 91.5 | 0.0 | -3.90 | 0.73 | 0.72 | — | 3.9 | 0.003 | 0.89 | 0.0 | 0.05 | 15.03 | 0.00 | 2.186 | 14.64 | 1.48 | 10.9 | 89.1 | 0.0 | -0.53 | 2.99 | 0.76 | 0.75 | — | 9172 | 1152 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X59 | 22046 | 2024-04-09 | 2020-05-25 | 2.98 | 3.23 | — | 3.1 | 0.006 | 0.84 | 0.0 | 0.04 | 27.58 | 0.01 | 2.103 | 10.75 | 7.57 | 6.2 | 93.7 | 0.2 | -2.07 | 0.84 | 0.87 | 3.08 | 3.1 | 0.006 | 0.90 | 2.0 | 0.04 | 27.40 | 0.01 | 2.104 | 10.28 | 4.77 | 5.2 | 94.8 | 0.0 | 0.73 | 0.47 | 0.86 | 0.89 | 2.81 | 14963 | 1123 | 11 | 290 | 1 | 0 | 0 | logfile |
✔ | 8TDo | 41172 | 2024-04-05 | 2023-07-04 | 3.1 | 3.56 | 2.70 | 3.5 | 0.005 | 0.56 | 0.0 | 0.05 | 13.25 | 0.01 | 2.175 | 16.36 | 0.00 | 3.4 | 96.6 | 0.0 | -3.41 | 0.50 | 0.84 | 5.15 | 3.4 | 0.006 | 0.58 | 0.0 | 0.05 | 14.92 | 0.00 | 2.220 | 12.88 | 2.53 | 4.8 | 95.2 | 0.0 | -3.57 | 0.33 | 0.51 | 0.84 | 5.08 | 2892 | 372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RSH | 24670 | 2024-04-08 | 2021-08-11 | 3.0 | 2.76 | — | 3.0 | 0.009 | 1.42 | 0.0 | 0.05 | 19.07 | 0.02 | 2.221 | 8.11 | 0.58 | 8.0 | 92.0 | 0.0 | -0.72 | 0.65 | 0.80 | 2.41 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.93 | 0.00 | 2.252 | 6.95 | 3.05 | 6.2 | 93.8 | 0.0 | 1.05 | 0.41 | 0.61 | 0.81 | 2.15 | 13744 | 1604 | 8 | 0 | 60 | 0 | 0 | logfile |
✔ | 6PM6 | 20389 | 2024-04-08 | 2019-07-01 | 2.9 | 3.37 | — | 3.4 | 0.005 | 0.92 | 0.0 | 0.06 | 11.65 | 0.01 | 2.335 | 5.13 | 0.00 | 4.9 | 95.1 | 0.0 | -4.86 | 0.54 | 0.80 | 4.25 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 14.74 | 0.00 | 2.205 | 8.94 | 3.23 | 5.0 | 95.0 | 0.0 | -0.51 | 1.10 | 0.50 | 0.79 | 3.56 | 14100 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2024-04-08 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.59 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 6.64 | 0.00 | 2.051 | 53.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.58 | 0.84 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 8DNS | 27579 | 2024-04-07 | 2022-07-11 | 3.22 | 3.05 | 3.26 | 3.1 | 0.006 | 1.46 | 0.0 | 0.09 | 11.07 | 0.01 | 2.425 | 5.60 | 3.33 | 2.4 | 97.6 | 0.0 | -0.08 | 0.66 | 0.78 | 2.68 | 3.1 | 0.004 | 0.64 | 0.0 | 0.05 | 14.89 | 0.00 | 2.121 | 11.10 | 2.50 | 2.4 | 97.6 | 0.0 | 0.03 | 1.61 | 0.68 | 0.82 | 3.68 | 10092 | 1332 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VFE | 21160 | 2024-04-07 | 2020-01-03 | 3.9 | 4.13 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 15.07 | 0.00 | 2.120 | 12.81 | 0.03 | 8.3 | 91.7 | 0.0 | -3.02 | 0.83 | 0.74 | 1.40 | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 17.26 | 0.00 | 2.133 | 13.90 | 3.15 | 9.9 | 90.1 | 0.0 | -3.56 | 0.55 | 0.84 | 0.76 | 1.12 | 61908 | 7887 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UXB | 20932 | 2024-04-07 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ASG | 15615 | 2024-04-08 | 2022-08-19 | 3.2 | 3.40 | 3.28 | 3.3 | 0.003 | 0.77 | 0.0 | 0.05 | 15.82 | 0.01 | 2.114 | 6.64 | 0.29 | 4.8 | 95.2 | 0.0 | -1.13 | 0.73 | 0.82 | 2.47 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.85 | 0.00 | 1.985 | 9.86 | 1.10 | 5.6 | 94.3 | 0.1 | -0.04 | 0.38 | 0.72 | 0.84 | 2.30 | 12687 | 1544 | 5 | 17 | 1 | 0 | 0 | logfile |
✔ | 6RB9 | 4789 | 2024-04-08 | 2019-04-09 | 3.2 | 3.30 | 3.19 | 3.2 | 0.010 | 0.82 | 0.0 | 0.05 | 13.72 | 0.00 | 2.049 | 17.66 | 1.42 | 15.9 | 84.1 | 0.0 | -5.55 | 0.79 | 0.84 | 3.57 | 3.3 | 0.005 | 0.84 | 1.0 | 0.05 | 16.25 | 0.00 | 2.199 | 15.72 | 8.46 | 9.1 | 90.9 | 0.0 | -3.13 | 0.38 | 0.74 | 0.82 | 3.08 | 13391 | 1736 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7STo | 25435 | 2024-04-12 | 2021-11-14 | 3.15 | 3.45 | — | 3.3 | 0.007 | 0.88 | 0.0 | 0.04 | 11.85 | 0.00 | 2.289 | 1.13 | 0.15 | 2.3 | 97.7 | 0.0 | 1.91 | 0.68 | 0.82 | 3.05 | 3.3 | 0.003 | 0.45 | 0.0 | 0.04 | 13.39 | 0.00 | 2.199 | 2.88 | 1.06 | 2.9 | 96.9 | 0.1 | 1.86 | 1.23 | 0.70 | 0.86 | 2.71 | 25210 | 1580 | 4 | 0 | 10 | 0 | 12268 | logfile |
✔ | 7MEW | 23805 | 2024-04-06 | 2021-04-08 | 3.9 | 3.76 | — | 3.8 | 0.005 | 1.01 | 0.0 | 0.09 | 12.29 | 0.00 | 2.214 | 9.39 | 0.00 | 2.5 | 97.5 | 0.0 | 2.11 | 0.53 | 0.71 | 2.56 | 3.8 | 0.003 | 0.61 | 0.0 | 0.04 | 14.64 | 0.00 | 2.172 | 9.62 | 2.48 | 2.5 | 97.5 | 0.0 | 2.34 | 0.38 | 0.53 | 0.71 | 3.05 | 7376 | 1144 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6U9o | 20701 | 2024-04-14 | 2019-09-09 | 3.36 | 3.10 | 3.35 | 3.8 | 0.018 | 1.66 | 0.0 | 0.07 | 18.44 | 0.01 | 2.177 | 7.30 | 8.31 | 7.3 | 92.7 | 0.0 | -4.12 | 0.59 | 0.79 | 2.41 | 3.7 | 0.003 | 0.76 | 0.0 | 0.05 | 17.43 | 0.00 | 2.166 | 15.44 | 4.71 | 6.1 | 93.9 | 0.0 | -1.19 | 0.68 | 0.60 | 0.80 | 1.70 | 31792 | 4016 | 24 | 0 | 40 | 0 | 0 | logfile |
✘ | 7EG0 | 31103 | 2024-04-09 | 2021-03-23 | 3.4 | 3.09 | — | 3.3 | 0.009 | 0.78 | 0.0 | 0.05 | 14.94 | 0.00 | 1.975 | 20.60 | 0.12 | 13.9 | 86.0 | 0.1 | -2.98 | 0.74 | 0.79 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15246 | 1878 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6RC8 | 4803 | 2024-04-10 | 2019-04-11 | 3.8 | 3.96 | — | 3.8 | 0.002 | 0.66 | 0.0 | 0.05 | 12.12 | 0.01 | 2.282 | 6.80 | 0.79 | 12.4 | 87.6 | 0.0 | -5.76 | 0.68 | 0.86 | 2.14 | 3.8 | 0.004 | 0.81 | 0.0 | 0.05 | 14.18 | 0.00 | 1.944 | 9.96 | 3.84 | 10.9 | 89.1 | 0.0 | -3.05 | 0.59 | 0.69 | 0.87 | 1.59 | 130152 | 16872 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7STL | 25432 | 2024-04-12 | 2021-11-14 | 2.95 | 3.30 | — | 3.2 | 0.004 | 0.75 | 0.0 | 0.04 | 11.53 | 0.00 | 2.190 | 0.38 | 0.15 | 2.3 | 97.7 | 0.0 | 1.82 | 0.67 | 0.82 | 3.24 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 14.18 | 0.00 | 2.088 | 2.80 | 0.66 | 3.5 | 96.4 | 0.1 | 1.76 | 0.54 | 0.66 | 0.84 | 3.12 | 25668 | 1600 | 4 | 0 | 8 | 0 | 12568 | logfile |
✔ | 8ASi | 15616 | 2024-04-08 | 2022-08-19 | 2.9 | 2.71 | 2.83 | 2.9 | 0.009 | 1.27 | 0.0 | 0.05 | 20.47 | 0.01 | 1.929 | 5.10 | 0.00 | 2.5 | 97.4 | 0.1 | -0.83 | 0.54 | 0.77 | 4.04 | 2.9 | 0.004 | 0.86 | 1.0 | 0.04 | 18.28 | 0.00 | 2.220 | 6.44 | 1.81 | 2.5 | 97.5 | 0.0 | 0.83 | 0.53 | 0.58 | 0.82 | 3.06 | 14720 | 1789 | 14 | 0 | 21 | 0 | 0 | logfile |