The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HD5 | 0201 | 2024-04-07 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 12.06 | 0.00 | 2.092 | 22.70 | 0.00 | 6.5 | 93.4 | 0.1 | -0.69 | 2.09 | 0.46 | 0.57 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V3D | 21033 | 2024-04-13 | 2019-11-25 | 2.95 | 3.39 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 22.90 | 0.01 | 1.698 | 5.91 | 0.04 | 2.8 | 97.1 | 0.1 | -1.93 | 0.85 | 0.86 | 2.47 | 3.2 | 0.004 | 0.59 | 0.0 | 0.03 | 22.83 | 0.01 | 1.838 | 6.88 | 2.74 | 3.8 | 96.1 | 0.1 | -0.38 | 1.16 | 0.86 | 0.90 | 2.44 | 89040 | 3117 | 45 | 3007 | 108 | 231 | 0 | logfile |
✔ | 8EUG | 24412 | 2024-04-09 | 2022-10-18 | 2.8 | 2.82 | — | 2.8 | 0.005 | 0.53 | 0.0 | 0.03 | 22.17 | 0.00 | 2.091 | 7.67 | 0.47 | 3.5 | 96.2 | 0.3 | -0.23 | 0.81 | 0.81 | 3.22 | 2.8 | 0.005 | 0.71 | 1.0 | 0.04 | 21.97 | 0.01 | 1.934 | 9.71 | 2.13 | 4.3 | 95.5 | 0.2 | -0.02 | 0.29 | 0.82 | 0.82 | 3.13 | 123162 | 7108 | 47 | 3138 | 1 | 0 | 0 | logfile |
✔ | 7oDR | 12845 | 2024-04-05 | 2021-04-30 | 2.9 | 3.11 | — | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 16.55 | 0.02 | 1.963 | 4.98 | 0.44 | 1.1 | 98.9 | 0.0 | 0.96 | 0.74 | 0.80 | 3.31 | 3.0 | 0.003 | 0.71 | 1.0 | 0.04 | 19.07 | 0.01 | 1.903 | 10.44 | 2.27 | 2.2 | 97.8 | 0.0 | 0.74 | 1.25 | 0.76 | 0.84 | 2.81 | 107464 | 9244 | 68 | 1489 | 135 | 0 | 0 | logfile |
✔ | 8E2J | 27838 | 2024-04-06 | 2022-08-15 | 3.44 | 3.67 | 3.24 | 3.4 | 0.003 | 0.63 | 0.0 | 0.03 | 15.86 | 0.01 | 2.271 | 3.43 | 2.70 | 2.3 | 97.7 | 0.0 | -0.36 | 0.44 | 0.67 | 0.61 | 3.4 | 0.003 | 0.49 | 0.0 | 0.02 | 17.89 | 0.00 | 2.066 | 11.91 | 3.38 | 1.5 | 98.5 | 0.0 | 3.75 | 1.68 | 0.46 | 0.67 | 0.86 | 6012 | 346 | 4 | 0 | 114 | 0 | 2694 | logfile |
✔ | 6PC8 | 20299 | 2024-04-10 | 2019-06-16 | 2.9 | 3.26 | — | 3.1 | 0.006 | 0.50 | 0.0 | 0.03 | 23.73 | 0.02 | 1.931 | 3.25 | 2.62 | 7.2 | 92.7 | 0.1 | -4.11 | 0.71 | 0.86 | 3.45 | 3.1 | 0.005 | 0.64 | 0.0 | 0.03 | 23.74 | 0.01 | 2.116 | 9.23 | 4.84 | 7.6 | 92.2 | 0.2 | -1.57 | 1.24 | 0.72 | 0.88 | 3.27 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6VWM | 21421 | 2024-04-14 | 2020-02-20 | 3.4 | 3.74 | — | 3.2 | 0.003 | 0.59 | 0.0 | 0.03 | 23.19 | 0.00 | 1.963 | 7.00 | 1.73 | 5.0 | 95.0 | 0.0 | -3.11 | 0.82 | 0.83 | 1.68 | 3.2 | 0.002 | 0.60 | 0.0 | 0.03 | 23.57 | 0.00 | 1.965 | 13.88 | 3.39 | 5.6 | 94.4 | 0.0 | -1.22 | 2.09 | 0.83 | 0.85 | 1.55 | 140044 | 5342 | 57 | 4580 | 53 | 0 | 0 | logfile |
✔ | 6VWN | 21422 | 2024-04-14 | 2020-02-20 | 3.4 | 3.71 | — | 3.2 | 0.002 | 0.58 | 0.0 | 0.03 | 23.32 | 0.00 | 1.951 | 7.12 | 3.85 | 4.3 | 95.7 | 0.0 | -3.14 | 0.83 | 0.82 | 1.13 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 23.63 | 0.00 | 1.862 | 15.41 | 3.57 | 5.7 | 94.3 | 0.0 | -1.20 | 1.22 | 0.84 | 0.86 | 1.12 | 140036 | 5341 | 57 | 4580 | 55 | 0 | 0 | logfile |
✔ | 8C99 | 16506 | 2024-04-13 | 2023-01-21 | 3.29 | 3.69 | 3.33 | 3.3 | 0.002 | 0.39 | 0.0 | 0.03 | 22.33 | 0.00 | 1.957 | 5.35 | 0.00 | 4.7 | 95.3 | 0.0 | 0.97 | 0.79 | 0.79 | 2.26 | 3.3 | 0.006 | 0.66 | 0.0 | 0.04 | 22.76 | 0.00 | 2.068 | 12.62 | 2.00 | 8.6 | 91.4 | 0.0 | -0.99 | 0.55 | 0.81 | 0.85 | 2.21 | 27988 | 987 | 11 | 945 | 0 | 0 | 0 | logfile |
✔ | 8C98 | 16505 | 2024-04-14 | 2023-01-21 | 3.66 | 4.27 | 3.73 | 3.6 | 0.002 | 0.38 | 0.0 | 0.03 | 22.60 | 0.00 | 1.923 | 5.79 | 0.00 | 4.7 | 95.3 | 0.0 | 1.35 | 0.79 | 0.72 | 1.74 | 3.6 | 0.004 | 0.57 | 0.0 | 0.03 | 23.01 | 0.00 | 2.084 | 14.57 | 2.73 | 8.2 | 91.8 | 0.0 | -0.81 | 0.59 | 0.79 | 0.83 | 1.31 | 30284 | 1080 | 12 | 1018 | 0 | 0 | 0 | logfile |
✔ | 8JHG | 36265 | 2024-04-09 | 2023-05-23 | 3.58 | 3.41 | 3.62 | 3.4 | 0.004 | 0.59 | 0.0 | 0.03 | 26.86 | 0.00 | 2.152 | 8.47 | 0.92 | 5.4 | 94.6 | 0.0 | 0.29 | 0.81 | 0.83 | 1.74 | 3.4 | 0.003 | 0.57 | 0.0 | 0.03 | 26.84 | 0.00 | 2.175 | 8.77 | 1.50 | 4.0 | 96.0 | 0.0 | 0.67 | 0.99 | 0.81 | 0.83 | 1.23 | 14829 | 1040 | 12 | 320 | 2 | 0 | 0 | logfile |
✔ | 8C97 | 16504 | 2024-04-15 | 2023-01-21 | 4.07 | 4.81 | 4.16 | 4.0 | 0.002 | 0.39 | 0.0 | 0.03 | 23.09 | 0.00 | 1.904 | 5.95 | 0.00 | 4.6 | 95.2 | 0.2 | 0.72 | 0.80 | 0.75 | — | 4.0 | 0.004 | 0.62 | 0.0 | 0.03 | 23.84 | 0.00 | 1.806 | 22.26 | 0.00 | 8.3 | 91.4 | 0.3 | -1.49 | 0.75 | 0.80 | 0.83 | — | 36163 | 1077 | 12 | 1292 | 0 | 0 | 0 | logfile |
✔ | 8BUU | 16246 | 2024-04-16 | 2022-11-30 | 2.9 | 3.66 | 2.92 | 3.1 | 0.004 | 0.56 | 0.0 | 0.03 | 22.72 | 0.01 | 1.758 | 4.20 | 0.95 | 3.1 | 96.9 | 0.1 | -1.03 | 0.83 | 0.77 | 3.67 | 3.1 | 0.007 | 0.69 | 0.0 | 0.04 | 22.72 | 0.01 | 1.781 | 12.61 | 2.93 | 2.9 | 97.1 | 0.0 | 0.61 | 0.43 | 0.92 | 0.94 | 2.81 | 144765 | 5859 | 60 | 4584 | 107 | 0 | 0 | logfile |
✔ | 7Y6F | 33639 | 2024-04-14 | 2022-06-20 | 2.7 | 2.68 | 2.68 | 2.8 | 0.003 | 0.62 | 0.0 | 0.03 | 15.05 | 0.00 | 1.807 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 4.11 | 0.71 | 0.83 | 1.79 | 2.8 | 0.003 | 0.68 | 0.0 | 0.03 | 18.67 | 0.00 | 2.113 | 4.75 | 0.75 | 0.4 | 99.6 | 0.0 | 4.57 | 0.30 | 0.71 | 0.84 | 1.11 | 31427 | 3772 | 48 | 0 | 59 | 0 | 0 | logfile |
✔ | 8E35 | 27857 | 2024-04-07 | 2022-08-16 | 2.27 | 2.92 | 2.48 | 2.8 | 0.009 | 0.45 | 0.0 | 0.03 | 22.65 | 0.02 | 2.028 | 1.04 | 0.00 | 4.6 | 95.4 | 0.0 | 0.37 | 0.75 | 0.86 | 3.34 | 2.7 | 0.005 | 0.67 | 0.0 | 0.04 | 22.57 | 0.01 | 1.918 | 2.10 | 0.42 | 5.0 | 94.9 | 0.1 | -0.88 | 1.10 | 0.72 | 0.91 | 5.76 | 115840 | 1179 | 11 | 3016 | 1 | 1 | 41853 | logfile |
✔ | 8F4X | 28858 | 2024-04-14 | 2022-11-11 | 3.01 | 3.72 | 3.03 | 3.4 | 0.004 | 0.55 | 0.0 | 0.03 | 15.82 | 0.00 | 2.226 | 5.99 | 0.00 | 0.6 | 99.4 | 0.0 | 0.06 | 0.84 | 0.83 | 1.71 | 3.4 | 0.003 | 0.45 | 0.0 | 0.03 | 17.37 | 0.00 | 2.267 | 5.35 | 1.52 | 0.1 | 99.9 | 0.0 | 5.20 | 0.44 | 0.85 | 0.85 | 0.20 | 32760 | 4020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NF8 | 9362 | 2024-04-08 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 17.55 | 0.00 | 1.916 | 3.08 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.55 | 0.00 | 2.086 | 13.55 | 2.24 | 5.6 | 94.4 | 0.0 | -0.33 | 2.61 | 0.84 | 0.80 | 1.14 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 7WiJ | 32531 | 2024-04-08 | 2022-01-03 | 3.17 | 3.08 | 3.01 | 3.2 | 0.002 | 0.50 | 0.0 | 0.03 | 14.49 | 0.00 | 2.243 | 4.52 | 0.00 | 0.4 | 99.6 | 0.0 | 2.75 | 0.70 | 0.85 | 1.82 | 3.2 | 0.003 | 0.51 | 0.0 | 0.03 | 15.61 | 0.00 | 2.261 | 4.52 | 1.58 | 0.8 | 99.2 | 0.0 | 3.39 | 0.25 | 0.71 | 0.88 | 1.65 | 12396 | 1602 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2024-04-08 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 17.57 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.76 | 0.00 | 2.098 | 13.26 | 1.83 | 5.2 | 94.7 | 0.1 | -0.39 | 1.96 | 0.85 | 0.85 | 1.35 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 7SYN | 25534 | 2024-04-11 | 2021-11-25 | 4.0 | 3.26 | 3.82 | 3.2 | 0.002 | 0.49 | 0.0 | 0.03 | 21.99 | 0.00 | 2.115 | 9.69 | 0.00 | 4.8 | 95.2 | 0.0 | -0.83 | 0.64 | 0.72 | — | 3.2 | 0.005 | 0.70 | 1.0 | 0.04 | 22.42 | 0.01 | 1.745 | 13.08 | 3.70 | 8.4 | 91.6 | 0.0 | -1.28 | 1.03 | 0.65 | 0.74 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |