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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E01 | 27812 | 2024-04-14 | 2022-08-08 | 3.4 | 3.80 | 3.71 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 17.85 | 0.00 | 2.278 | 9.40 | 0.41 | 2.0 | 98.0 | 0.0 | -0.28 | 0.63 | 0.61 | 0.23 | 3.8 | 0.003 | 0.65 | 0.0 | 0.05 | 18.21 | 0.00 | 2.132 | 12.73 | 5.13 | 3.2 | 96.8 | 0.0 | 0.01 | 1.03 | 0.73 | 0.79 | 1.13 | 91080 | 12060 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CHH | 30374 | 2024-04-13 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.10 | 0.0 | 0.06 | 15.26 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 8GWB | 34308 | 2024-04-11 | 2022-09-16 | 2.75 | 2.95 | 2.85 | 25.0 | 0.009 | 1.07 | 1.0 | 0.05 | 17.30 | 0.01 | 1.556 | 16.84 | 2.25 | 7.5 | 92.3 | 0.2 | -2.40 | 0.29 | 0.01 | 0.23 | 25.0 | 0.004 | 0.81 | 0.0 | 0.04 | 17.94 | 0.01 | 1.944 | 21.98 | 3.71 | 9.2 | 90.7 | 0.1 | -1.83 | 1.62 | 0.36 | 0.18 | 0.12 | 21879 | 2655 | 16 | 54 | 10 | 7 | 0 | logfile |
✔ | 6NDY | 0443 | 2024-04-08 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.25 | 0.00 | 0.891 | 12.65 | 1.55 | 5.8 | 94.2 | 0.0 | -0.19 | 1.31 | 0.79 | 0.81 | 1.00 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 8UN1 | 42390 | 2024-04-11 | 2023-10-18 | 3.9 | 4.40 | 4.25 | 4.3 | 0.014 | 1.17 | 0.0 | 0.05 | 16.24 | 0.01 | 2.085 | 21.08 | 0.47 | 5.1 | 94.9 | 0.0 | -0.76 | 0.71 | 0.65 | 0.23 | 4.3 | 0.004 | 0.82 | 0.0 | 0.05 | 17.18 | 0.01 | 2.091 | 18.02 | 4.30 | 4.6 | 95.4 | 0.0 | -0.11 | 2.91 | 0.75 | 0.75 | 0.54 | 22091 | 2904 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2024-04-10 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 7RZY | 24783 | 2024-04-09 | 2021-08-28 | 3.5 | 2.57 | 3.55 | 4.0 | 0.014 | 1.83 | 0.0 | 0.08 | 15.46 | 0.00 | 2.491 | 1.92 | 0.80 | 10.2 | 88.4 | 1.4 | -2.89 | 0.55 | 0.40 | 0.25 | 3.2 | 0.004 | 0.82 | 0.0 | 0.04 | 17.64 | 0.01 | 2.106 | 13.79 | 3.13 | 7.5 | 91.9 | 0.6 | -1.20 | 1.45 | 0.70 | 0.66 | 0.76 | 17458 | 2177 | 13 | 0 | 7 | 0 | 0 | logfile |
✔ | 7RLJ | 24532 | 2024-04-10 | 2021-07-23 | 3.8 | 4.28 | — | 3.7 | 0.004 | 0.92 | 0.0 | 0.05 | 15.19 | 0.01 | 2.067 | 15.59 | 0.01 | 6.2 | 93.2 | 0.6 | -2.67 | 0.86 | 0.79 | 0.25 | 3.7 | 0.005 | 0.73 | 0.0 | 0.05 | 16.26 | 0.00 | 1.891 | 19.14 | 2.36 | 7.9 | 91.9 | 0.2 | -1.33 | 1.27 | 0.89 | 0.85 | 0.92 | 69156 | 8736 | 24 | 0 | 36 | 0 | 0 | logfile |
✔ | 6oF2 | 20040 | 2024-04-07 | 2019-03-28 | 2.9 | 2.77 | — | 3.7 | 0.006 | 1.00 | 0.0 | 0.05 | 14.67 | 0.01 | 2.062 | 8.80 | 1.02 | 17.7 | 80.2 | 2.2 | -4.30 | 0.69 | 0.63 | 0.25 | 3.4 | 0.004 | 1.00 | 1.0 | 0.05 | 17.01 | 0.01 | 2.004 | 11.03 | 2.46 | 6.9 | 93.1 | 0.0 | 0.41 | 1.58 | 0.79 | 0.83 | 2.07 | 11062 | 1422 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2024-04-09 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.003 | 0.87 | 0.0 | 0.05 | 15.11 | 0.00 | 2.140 | 18.87 | 2.86 | 1.8 | 98.2 | 0.0 | 0.14 | 2.72 | 0.66 | 0.83 | 0.25 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2024-04-16 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.19 | 0.01 | 1.308 | 23.93 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.005 | 0.90 | 1.0 | 0.05 | 18.58 | 0.01 | 1.957 | 18.48 | 4.22 | 12.8 | 87.2 | 0.0 | -3.18 | 1.44 | 0.57 | 0.55 | 0.29 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 8G2U | 29681 | 2024-04-14 | 2023-02-06 | 3.0 | 2.24 | — | 3.2 | 0.004 | 0.85 | 0.0 | 0.04 | 23.51 | 0.01 | 2.144 | 4.34 | 0.00 | 5.2 | 94.8 | 0.1 | -1.95 | 0.46 | 0.32 | 0.25 | 3.0 | 0.006 | 0.67 | 0.0 | 0.04 | 23.44 | 0.01 | 1.936 | 9.34 | 3.74 | 7.1 | 92.9 | 0.1 | -0.81 | 2.69 | 0.86 | 0.88 | 2.82 | 140855 | 5496 | 51 | 4559 | 0 | 0 | 0 | logfile |
✔ | 6UE9 | 20751 | 2024-04-10 | 2019-09-20 | 2.9 | 3.89 | — | 4.2 | 0.007 | 1.05 | 0.0 | 0.06 | 14.61 | 0.01 | 2.241 | 3.10 | 0.32 | 11.2 | 88.8 | 0.0 | -3.87 | 0.59 | 0.37 | 0.26 | 3.6 | 0.004 | 1.00 | 0.0 | 0.05 | 15.55 | 0.01 | 2.152 | 11.81 | 2.34 | 7.4 | 92.6 | 0.0 | -1.74 | 1.74 | 0.78 | 0.81 | 1.73 | 18227 | 2475 | 17 | 0 | 12 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2024-04-14 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 23.52 | 0.01 | 0.682 | 13.02 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.006 | 0.87 | 1.0 | 0.04 | 23.22 | 0.01 | 0.938 | 24.00 | 6.89 | 14.2 | 83.8 | 2.0 | -2.91 | 1.60 | 0.61 | 0.73 | 0.64 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 8TX1 | 41674 | 2024-04-08 | 2023-08-22 | 3.62 | 4.05 | 3.79 | 3.4 | 0.006 | 0.92 | 0.0 | 0.04 | 15.94 | 0.01 | 2.136 | 12.74 | 0.20 | 6.6 | 93.2 | 0.2 | 0.18 | 0.34 | 0.51 | 0.26 | 3.3 | 0.003 | 0.73 | 0.0 | 0.04 | 16.28 | 0.01 | 2.132 | 14.89 | 3.23 | 8.7 | 91.0 | 0.3 | -1.13 | 1.49 | 0.35 | 0.54 | 0.65 | 13687 | 1894 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2024-04-07 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.96 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 18.35 | 0.01 | 1.266 | 30.60 | 4.47 | 4.1 | 95.9 | 0.0 | -0.17 | 2.46 | 0.78 | 0.74 | 0.37 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7KNi | 22950 | 2024-04-16 | 2020-11-04 | 3.91 | 4.86 | 4.14 | 3.9 | 0.004 | 0.64 | 0.0 | 0.05 | 14.19 | 0.01 | 2.045 | 4.23 | 0.07 | 4.4 | 95.6 | 0.0 | -1.75 | 0.77 | 0.56 | 0.26 | 4.0 | 0.003 | 0.75 | 1.0 | 0.05 | 15.46 | 0.00 | 1.803 | 16.26 | 1.51 | 4.9 | 95.0 | 0.0 | -0.82 | 1.34 | 0.83 | 0.73 | 0.37 | 39574 | 4878 | 18 | 0 | 68 | 0 | 0 | logfile |
✔ | 8UUZ | 42602 | 2024-04-05 | 2023-11-02 | 3.77 | 4.50 | 3.78 | 8.8 | 0.003 | 0.73 | 0.0 | 0.04 | 13.06 | 0.00 | 2.213 | 38.18 | 12.61 | 6.6 | 93.4 | 0.0 | -1.81 | 0.61 | 0.33 | 0.27 | 8.5 | 0.003 | 0.91 | 0.0 | 0.05 | 16.74 | 0.01 | 2.249 | 38.64 | 6.52 | 8.0 | 92.0 | 0.0 | -1.98 | 1.31 | 0.75 | 0.58 | 0.64 | 2258 | 300 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DGi | 27423 | 2024-04-08 | 2022-06-23 | 3.94 | 4.27 | 4.04 | 4.1 | 0.005 | 1.16 | 4.0 | 0.06 | 15.93 | 0.01 | 2.263 | 8.89 | 0.67 | 5.9 | 93.8 | 0.3 | -2.32 | 0.67 | 0.52 | 0.27 | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 16.48 | 0.00 | 2.047 | 20.88 | 3.53 | 6.9 | 92.9 | 0.2 | -0.43 | 0.55 | 0.66 | 0.51 | 0.27 | 13580 | 1690 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2024-04-10 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 25.75 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 24.43 | 0.00 | 1.986 | 20.92 | 2.20 | 8.8 | 90.9 | 0.4 | -2.53 | 1.95 | 0.33 | 0.23 | 0.18 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |