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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GM6 | 9524 | 2024-04-06 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 15.15 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✘ | 5GMK | 9525 | 2024-04-11 | 2016-07-14 | 3.4 | 3.52 | — | 3.5 | 0.012 | 1.25 | 16.0 | 0.07 | 16.17 | 0.01 | 1.378 | 19.35 | 2.77 | 7.7 | 91.2 | 1.0 | -3.71 | 0.47 | 0.53 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75273 | 8026 | 51 | 404 | 981 | 0 | 0 | logfile |
✘ | 5Go9 | 9528 | 2024-04-16 | 2016-07-26 | 4.4 | 4.59 | — | 4.4 | 0.020 | 1.79 | 36.0 | 0.11 | 12.27 | 0.01 | 2.185 | 7.55 | 0.88 | 8.7 | 90.7 | 0.6 | -4.90 | 0.78 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105068 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GoA | 9529 | 2024-04-16 | 2016-07-26 | 4.2 | 4.52 | — | 4.2 | 0.022 | 1.86 | 60.0 | 0.12 | 12.40 | 0.01 | 1.505 | 7.29 | 1.03 | 8.5 | 90.9 | 0.7 | -4.96 | 0.81 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105072 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GUP | 9539 | 2024-04-06 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2024-04-07 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2024-04-07 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H1B | 9566 | 2024-04-06 | 2016-10-08 | 4.4 | 3.94 | — | 3.6 | 0.010 | 1.41 | 0.0 | 0.06 | 16.13 | 0.01 | 1.503 | 54.25 | 5.67 | 6.2 | 91.1 | 2.6 | -1.51 | 0.59 | 0.70 | — | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 13.69 | 0.00 | 1.920 | 15.92 | 0.13 | 4.7 | 94.4 | 0.9 | 0.57 | 2.98 | 0.64 | 0.82 | — | 7359 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 5H1C | 9567 | 2024-04-06 | 2016-10-08 | 4.5 | 4.34 | — | 3.8 | 0.009 | 1.30 | 0.0 | 0.05 | 15.37 | 0.00 | 1.454 | 41.46 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.52 | 0.66 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 15.23 | 0.00 | 1.883 | 16.17 | 0.00 | 6.1 | 92.8 | 1.1 | 0.25 | 1.57 | 0.58 | 0.83 | — | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✘ | 5H1Q | 9570 | 2024-04-11 | 2016-10-11 | 3.3 | 3.90 | — | 4.0 | 0.008 | 1.04 | 0.0 | 0.06 | 11.65 | 0.00 | 1.998 | 16.22 | 0.31 | 12.6 | 86.8 | 0.6 | -5.07 | 0.44 | 0.69 | 3.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23784 | 2888 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H1S | 9572 | 2024-04-13 | 2016-10-11 | 3.5 | 3.54 | — | 3.5 | 0.010 | 1.06 | 1.0 | 0.07 | 25.45 | 0.01 | 1.028 | 46.50 | 3.21 | 16.7 | 81.7 | 1.6 | -4.90 | 0.78 | 0.77 | 1.92 | 3.5 | 0.005 | 0.76 | 0.0 | 0.04 | 24.74 | 0.01 | 1.912 | 14.62 | 6.09 | 12.2 | 87.5 | 0.3 | -2.82 | 0.65 | 0.79 | 0.82 | 0.98 | 90825 | 3276 | 32 | 3018 | 0 | 0 | 0 | logfile |
✔ | 5H3o | 6656 | 2024-04-09 | 2016-10-26 | 3.5 | 3.66 | — | 3.6 | 0.015 | 1.48 | 4.0 | 0.08 | 15.98 | 0.01 | 2.235 | 19.87 | 6.55 | 6.0 | 93.4 | 0.6 | -3.19 | 0.78 | 0.86 | 1.93 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 17.47 | 0.00 | 1.736 | 11.82 | 4.49 | 3.2 | 96.8 | 0.0 | 0.84 | 0.78 | 0.73 | 0.81 | 1.00 | 16958 | 2040 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 5H4P | 9569 | 2024-04-09 | 2016-11-01 | 3.07 | 3.58 | — | 3.5 | 0.008 | 0.86 | 0.0 | 0.05 | 22.13 | 0.01 | 1.709 | 13.77 | 0.15 | 6.2 | 92.9 | 0.9 | -4.11 | 0.70 | 0.78 | 2.90 | 3.5 | 0.006 | 0.75 | 0.0 | 0.04 | 22.37 | 0.01 | 2.008 | 12.52 | 5.03 | 8.5 | 91.1 | 0.4 | -1.95 | 0.61 | 0.68 | 0.79 | 2.48 | 122929 | 6432 | 44 | 3370 | 0 | 0 | 0 | logfile |
✔ | 5Hi9 | 6580 | 2024-04-10 | 2016-01-11 | 4.4 | 4.53 | — | 4.4 | 0.009 | 1.46 | 20.0 | 0.09 | 13.13 | 0.01 | 2.033 | 23.50 | 0.93 | 7.7 | 91.4 | 0.8 | -4.25 | 0.73 | 0.73 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.04 | 13.70 | 0.00 | 2.087 | 17.14 | 0.00 | 7.6 | 92.4 | 0.0 | -1.89 | 2.48 | 0.76 | 0.78 | — | 19636 | 2408 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5i08 | 8069 | 2024-04-11 | 2016-02-03 | 4.04 | 4.14 | 3.96 | 4.1 | 0.014 | 1.74 | 3.0 | 0.09 | 8.79 | 0.01 | 2.174 | 3.14 | 0.00 | 7.0 | 92.1 | 0.8 | 0.56 | 0.70 | 0.71 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 12.23 | 0.00 | 2.180 | 9.00 | 0.08 | 8.7 | 90.8 | 0.6 | -1.15 | 1.59 | 0.73 | 0.79 | — | 22683 | 2874 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5i68 | 8072 | 2024-04-17 | 2016-02-16 | 3.37 | 3.45 | — | 3.5 | 0.009 | 1.47 | 0.0 | 0.08 | 10.48 | 0.01 | 1.419 | 25.74 | 1.25 | 5.2 | 94.8 | 0.0 | -0.41 | 0.73 | 0.80 | 3.74 | 3.5 | 0.004 | 0.70 | 0.0 | 0.05 | 15.06 | 0.00 | 2.041 | 10.94 | 3.84 | 2.7 | 97.3 | 0.0 | -0.06 | 2.05 | 0.75 | 0.86 | 3.84 | 42016 | 5296 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2024-04-08 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 19.90 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.96 | 0.00 | 2.246 | 7.53 | 1.92 | 8.3 | 91.7 | 0.0 | -0.49 | 0.68 | 0.62 | 0.82 | 2.17 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 5iRZ | 8118 | 2024-04-08 | 2016-03-15 | 3.28 | 3.63 | 3.24 | 3.5 | 0.010 | 1.31 | 0.0 | 0.23 | 23.00 | 0.00 | 2.008 | 9.02 | 0.00 | 7.5 | 92.5 | 0.0 | -5.78 | 0.68 | 0.77 | 4.48 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 17.04 | 0.00 | 2.154 | 8.90 | 1.93 | 6.6 | 93.4 | 0.0 | 0.91 | 0.70 | 0.65 | 0.84 | 3.04 | 12504 | 1576 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 5iS0 | 8119 | 2024-04-07 | 2016-03-15 | 3.43 | 3.36 | 3.37 | 3.2 | 0.015 | 1.24 | 0.0 | 0.06 | 12.94 | 0.01 | 1.283 | 5.42 | 0.00 | 10.1 | 89.7 | 0.3 | -5.27 | 0.63 | 0.73 | 2.61 | 3.2 | 0.003 | 0.73 | 0.0 | 0.04 | 15.88 | 0.00 | 2.181 | 9.23 | 2.06 | 5.8 | 94.2 | 0.0 | -0.20 | 1.48 | 0.62 | 0.81 | 2.46 | 11808 | 1576 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5iT9 | 8124 | 2024-04-12 | 2016-03-16 | 3.8 | 3.86 | 3.80 | 3.9 | 0.007 | 1.31 | 42.0 | 0.10 | 25.57 | 0.01 | 0.713 | 10.39 | 9.44 | 11.2 | 84.3 | 4.6 | -3.05 | 0.60 | 0.76 | 0.99 | 3.8 | 0.004 | 0.78 | 0.0 | 0.04 | 24.31 | 0.01 | 1.854 | 16.77 | 5.50 | 11.5 | 87.2 | 1.3 | -1.85 | 1.70 | 0.62 | 0.78 | 0.92 | 80144 | 4848 | 43 | 1972 | 83 | 0 | 0 | logfile |