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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7S21 | 24815 | 2024-04-09 | 2021-09-02 | 3.4 | 3.86 | — | 3.8 | 0.006 | 0.78 | 0.0 | 0.04 | 15.50 | 0.01 | 0.827 | 18.73 | 0.00 | 14.6 | 85.4 | 0.0 | -2.41 | 0.72 | 0.84 | 3.42 | 3.8 | 0.005 | 0.71 | 0.0 | 0.04 | 17.52 | 0.00 | 2.240 | 10.48 | 4.43 | 13.2 | 86.8 | 0.0 | -1.14 | 0.44 | 0.74 | 0.85 | 2.81 | 122460 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZM1 | 11277 | 2024-04-15 | 2020-07-01 | 4.7 | 4.57 | — | 4.3 | 0.007 | 0.91 | 0.0 | 0.06 | 16.15 | 0.01 | 0.828 | 14.04 | 0.55 | 6.5 | 93.3 | 0.2 | -3.15 | 0.76 | 0.60 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 13.66 | 0.00 | 2.064 | 18.07 | 0.00 | 6.0 | 94.0 | 0.0 | -1.03 | 1.20 | 0.86 | 0.79 | — | 22543 | 2844 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W4o | 21535 | 2024-04-13 | 2020-03-11 | 4.8 | 5.05 | 4.72 | 4.7 | 0.004 | 0.78 | 1.0 | 0.05 | 10.85 | 0.00 | 0.834 | 15.75 | 0.91 | 3.0 | 96.7 | 0.2 | -1.53 | 0.83 | 0.70 | — | 4.7 | 0.003 | 0.72 | 0.0 | 0.04 | 12.91 | 0.00 | 2.109 | 17.75 | 0.00 | 2.3 | 97.5 | 0.2 | 0.82 | 1.31 | 0.89 | 0.82 | — | 14475 | 1789 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UGP | 26493 | 2024-04-12 | 2022-03-25 | 4.2 | 3.87 | 4.16 | 3.5 | 0.006 | 1.00 | 1.0 | 0.07 | 16.08 | 0.01 | 0.835 | 6.55 | 0.52 | 6.7 | 93.3 | 0.0 | -4.45 | 0.81 | 0.72 | — | 3.5 | 0.003 | 0.73 | 0.0 | 0.05 | 13.82 | 0.00 | 2.154 | 12.32 | 0.04 | 6.9 | 93.1 | 0.0 | -2.30 | 2.08 | 0.85 | 0.78 | — | 25047 | 3096 | 34 | 0 | 66 | 0 | 0 | logfile |
✔ | 5T5H | 8361 | 2024-04-16 | 2016-08-31 | 2.54 | 2.84 | — | 2.9 | 0.013 | 1.45 | 1.0 | 0.06 | 23.28 | 0.04 | 0.838 | 36.80 | 0.69 | 5.4 | 93.4 | 1.2 | -2.36 | 0.64 | 0.82 | 3.92 | 2.9 | 0.006 | 0.94 | 0.0 | 0.04 | 23.65 | 0.01 | 1.800 | 15.51 | 4.29 | 4.1 | 95.8 | 0.1 | -0.66 | 0.60 | 0.63 | 0.84 | 3.17 | 105112 | 5369 | 74 | 2884 | 108 | 83 | 0 | logfile |
✔ | 8G38 | 29689 | 2024-04-16 | 2023-02-07 | 3.2 | 2.14 | — | 2.9 | 0.009 | 1.10 | 9.0 | 0.07 | 25.06 | 0.01 | 0.842 | 5.44 | 4.67 | 3.4 | 96.5 | 0.1 | -1.04 | 0.72 | 0.71 | 1.68 | 2.1 | 0.007 | 0.67 | 0.0 | 0.04 | 23.88 | 0.01 | 2.042 | 13.21 | 5.27 | 6.2 | 93.8 | 0.1 | -0.71 | 0.37 | 0.73 | 0.74 | 1.95 | 144290 | 5922 | 53 | 4559 | 1 | 1 | 0 | logfile |
✔ | 8FoU | 29354 | 2024-04-11 | 2023-01-03 | 3.3 | 3.70 | 3.37 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.43 | 0.00 | 0.843 | 25.35 | 0.00 | 4.8 | 95.2 | 0.0 | -2.68 | 0.72 | 0.85 | 2.90 | 3.7 | 0.005 | 0.64 | 0.0 | 0.05 | 16.83 | 0.00 | 2.192 | 12.56 | 4.13 | 6.3 | 93.7 | 0.0 | -2.23 | 0.42 | 0.73 | 0.86 | 1.98 | 23280 | 3048 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UGN | 26490 | 2024-04-12 | 2022-03-25 | 3.4 | 3.60 | 3.35 | 3.4 | 0.004 | 0.65 | 0.0 | 0.19 | 15.93 | 0.01 | 0.844 | 6.76 | 0.11 | 4.5 | 95.5 | 0.0 | -3.47 | 0.83 | 0.84 | 2.43 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 15.11 | 0.00 | 2.186 | 8.23 | 4.25 | 6.3 | 93.7 | 0.0 | -1.83 | 1.00 | 0.84 | 0.88 | 2.36 | 25698 | 3150 | 49 | 0 | 87 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2024-04-08 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.33 | 0.00 | 2.004 | 14.38 | 3.09 | 5.4 | 94.2 | 0.4 | 0.90 | 2.86 | 0.89 | 0.83 | 1.24 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 7Ui9 | 26542 | 2024-04-07 | 2022-03-28 | 3.3 | 4.81 | 3.23 | 2.8 | 0.004 | 0.69 | 0.0 | 0.05 | 13.63 | 0.01 | 0.850 | 9.75 | 0.06 | 1.9 | 98.0 | 0.1 | 0.62 | 0.59 | 0.52 | 0.82 | 2.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.86 | 0.00 | 2.125 | 13.05 | 0.80 | 3.0 | 97.0 | 0.0 | 1.30 | 0.52 | 0.81 | 0.79 | 0.72 | 63137 | 7857 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiG | 26545 | 2024-04-13 | 2022-03-29 | 4.3 | 8.24 | 4.32 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 12.88 | 0.01 | 0.850 | 11.11 | 0.09 | 1.3 | 98.5 | 0.1 | 1.54 | 0.45 | 0.44 | — | 3.9 | 0.010 | 0.70 | 0.0 | 0.04 | 12.89 | 0.00 | 2.117 | 17.22 | 0.00 | 2.6 | 97.4 | 0.0 | 1.41 | 0.75 | 0.58 | 0.78 | — | 27580 | 3390 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiF | 26544 | 2024-04-07 | 2022-03-29 | 4.6 | 5.63 | 4.34 | 6.7 | 0.004 | 0.69 | 0.0 | 0.05 | 13.63 | 0.01 | 0.850 | 9.76 | 0.06 | 1.9 | 98.0 | 0.1 | 0.62 | 0.48 | 0.33 | — | 6.8 | 0.003 | 0.80 | 0.0 | 0.05 | 13.37 | 0.01 | 2.022 | 21.04 | 0.00 | 3.7 | 96.3 | 0.0 | -0.31 | 1.25 | 0.61 | 0.63 | — | 63137 | 7857 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LF2 | 23298 | 2024-04-15 | 2021-01-15 | 3.72 | 4.26 | 3.84 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 9.01 | 0.01 | 0.855 | 11.53 | 0.16 | 11.0 | 88.9 | 0.1 | -4.07 | 0.80 | 0.70 | 1.81 | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 12.73 | 0.01 | 1.350 | 21.16 | 2.34 | 10.1 | 89.7 | 0.1 | -2.24 | 2.48 | 0.81 | 0.72 | 1.84 | 33798 | 4452 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 8CXi | 27058 | 2024-04-09 | 2022-05-21 | 3.4 | 3.96 | 3.26 | 3.9 | 0.008 | 0.97 | 5.0 | 0.09 | 14.27 | 0.01 | 0.857 | 26.16 | 3.00 | 9.6 | 89.7 | 0.7 | -2.57 | 0.43 | 0.75 | 1.93 | 3.9 | 0.004 | 0.78 | 0.0 | 0.05 | 15.82 | 0.00 | 2.116 | 11.37 | 4.84 | 10.5 | 89.3 | 0.2 | -1.30 | 1.23 | 0.29 | 0.73 | 1.54 | 16832 | 2196 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2024-04-17 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.78 | 0.00 | 0.860 | 9.27 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.5 | 0.003 | 0.80 | 0.0 | 0.05 | 14.75 | 0.01 | 2.093 | 18.95 | 0.00 | 5.4 | 94.4 | 0.3 | -1.55 | 1.31 | 0.51 | 0.19 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6PX3 | 20517 | 2024-04-08 | 2019-07-24 | 4.1 | 5.90 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.06 | 26.73 | 0.01 | 0.861 | 4.63 | 0.45 | 4.5 | 95.5 | 0.1 | -0.93 | 0.89 | 0.79 | — | 4.1 | 0.004 | 0.63 | 0.0 | 0.04 | 27.10 | 0.00 | 2.198 | 18.66 | 0.00 | 4.5 | 95.5 | 0.0 | 0.44 | 2.23 | 0.90 | 0.81 | — | 14323 | 1059 | 11 | 290 | 3 | 0 | 0 | logfile |
✔ | 7Z12 | 14438 | 2024-04-10 | 2022-02-24 | 3.0 | 3.83 | — | 3.4 | 0.007 | 1.03 | 1.0 | 0.06 | 15.28 | 0.01 | 0.865 | 31.24 | 1.37 | 15.0 | 83.9 | 1.1 | -3.04 | 0.84 | 0.81 | 1.95 | 3.4 | 0.005 | 0.82 | 0.0 | 0.05 | 16.53 | 0.00 | 2.102 | 21.88 | 1.52 | 12.7 | 87.1 | 0.2 | -1.76 | 0.57 | 0.82 | 0.80 | 1.56 | 18352 | 2286 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2024-04-05 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 26.49 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.004 | 0.72 | 0.0 | 0.04 | 23.97 | 0.01 | 1.038 | 31.29 | 0.00 | 8.9 | 90.5 | 0.5 | -1.73 | 2.17 | 0.88 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✘ | 6GYS | 0096 | 2024-04-16 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.42 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 5VGZ | 8672 | 2024-04-11 | 2017-04-12 | 4.5 | 4.22 | — | 3.7 | 0.005 | 1.13 | 1.0 | 0.06 | 11.28 | 0.01 | 0.875 | 16.03 | 0.81 | 7.5 | 92.1 | 0.4 | -4.68 | 0.72 | 0.72 | — | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 12.78 | 0.00 | 2.064 | 23.36 | 0.00 | 9.0 | 91.0 | 0.0 | -1.49 | 1.42 | 0.74 | 0.78 | — | 36741 | 4603 | 18 | 0 | 1 | 0 | 0 | logfile |