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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8K5C | 36901 | 2024-04-05 | 2023-07-21 | 3.13 | 3.33 | 3.05 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 17.07 | 0.01 | 2.341 | 8.34 | 0.78 | 4.2 | 95.8 | 0.0 | 0.59 | 0.50 | 0.78 | 1.82 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 17.23 | 0.01 | 2.280 | 8.13 | 4.26 | 5.5 | 94.5 | 0.0 | 0.46 | 1.78 | 0.50 | 0.78 | 2.39 | 2380 | 291 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8SEK | 40419 | 2024-04-05 | 2023-04-10 | 3.5 | 3.55 | 3.07 | 3.8 | 0.032 | 2.39 | 0.0 | 0.14 | 10.43 | 0.01 | 2.397 | 1.27 | 0.00 | 20.0 | 80.0 | 0.0 | -3.19 | 0.49 | 0.76 | 4.54 | 3.8 | 0.004 | 0.81 | 0.0 | 0.06 | 15.62 | 0.00 | 2.198 | 17.09 | 3.33 | 17.0 | 83.0 | 0.0 | -4.18 | 1.30 | 0.39 | 0.73 | 1.55 | 2380 | 320 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2024-04-05 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.003 | 0.88 | 0.0 | 0.05 | 16.43 | 0.00 | 2.174 | 23.11 | 7.04 | 19.0 | 81.0 | 0.0 | -4.61 | 2.78 | 0.57 | 0.66 | 2.74 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2024-04-05 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 16.27 | 0.00 | 2.223 | 2.35 | 2.36 | 0.6 | 99.4 | 0.0 | 0.37 | 0.12 | 0.36 | 0.86 | 4.66 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZQ | 24774 | 2024-04-05 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.31 | 0.0 | 0.03 | 15.02 | 0.00 | 2.341 | 5.30 | 1.07 | 0.0 | 100.0 | 0.0 | 5.97 | 0.30 | 0.82 | 0.82 | 2.01 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GZ9 | 34393 | 2024-04-05 | 2022-09-26 | 2.62 | 2.44 | 2.40 | 2.4 | 0.003 | 0.69 | 0.0 | 0.06 | 14.01 | 0.00 | 2.670 | 1.93 | 0.00 | 0.3 | 99.7 | 0.0 | -0.15 | 0.28 | 0.90 | 7.26 | 2.4 | 0.002 | 0.53 | 0.0 | 0.06 | 14.22 | 0.00 | 2.674 | 1.16 | 3.10 | 0.6 | 99.4 | 0.0 | -0.04 | 0.26 | 0.28 | 0.91 | 7.99 | 2426 | 390 | 58 | 0 | 0 | 24 | 0 | logfile |
✔ | 7L7H | 23212 | 2024-04-05 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.005 | 0.96 | 0.0 | 0.06 | 16.99 | 0.00 | 2.068 | 20.90 | 16.08 | 31.5 | 68.5 | 0.0 | -5.06 | 0.73 | 0.51 | 0.66 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9A | 24253 | 2024-04-05 | 2021-06-17 | 3.5 | 2.68 | — | 2.4 | 0.007 | 1.26 | 0.0 | 0.06 | 12.63 | 0.01 | 2.135 | 19.96 | 0.00 | 2.9 | 97.1 | 0.0 | -0.16 | 0.72 | 0.70 | 2.72 | 2.4 | 0.003 | 0.70 | 0.0 | 0.04 | 15.39 | 0.00 | 2.180 | 14.08 | 3.88 | 3.6 | 96.4 | 0.0 | -0.87 | 0.55 | 0.73 | 0.69 | 2.00 | 2431 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZU | 24778 | 2024-04-05 | 2021-08-27 | 2.3 | 2.32 | — | 2.0 | 0.006 | 0.50 | 0.0 | 0.04 | 13.61 | 0.01 | 2.212 | 7.50 | 0.00 | 2.9 | 97.1 | 0.0 | 1.69 | 0.77 | 0.78 | 1.84 | 2.0 | 0.003 | 0.54 | 0.0 | 0.03 | 15.53 | 0.00 | 2.199 | 7.70 | 2.11 | 0.0 | 100.0 | 0.0 | 5.17 | 0.52 | 0.80 | 0.81 | 1.81 | 2439 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHA | 21201 | 2024-04-05 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 13.37 | 0.00 | 2.246 | 12.62 | 0.00 | 12.4 | 87.6 | 0.0 | -4.31 | 3.37 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TJo | 10512 | 2024-04-05 | 2019-11-26 | 3.2 | 3.43 | 2.57 | 3.5 | 0.013 | 1.18 | 0.0 | 0.07 | 9.67 | 0.01 | 2.394 | 2.20 | 0.00 | 12.7 | 87.3 | 0.0 | -4.63 | 0.36 | 0.76 | 4.64 | 3.4 | 0.003 | 0.71 | 0.0 | 0.05 | 12.55 | 0.00 | 2.265 | 8.01 | 2.84 | 5.7 | 94.3 | 0.0 | -3.33 | 0.57 | 0.40 | 0.80 | 4.17 | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2024-04-05 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 7RZS | 24776 | 2024-04-05 | 2021-08-27 | 2.52 | 2.32 | — | 2.1 | 0.005 | 0.46 | 0.0 | 0.03 | 14.73 | 0.00 | 2.273 | 3.04 | 0.00 | 1.0 | 99.0 | 0.0 | 1.98 | 0.77 | 0.79 | 1.82 | 2.0 | 0.003 | 0.42 | 0.0 | 0.03 | 15.88 | 0.00 | 2.317 | 5.27 | 1.42 | 0.0 | 100.0 | 0.0 | 5.62 | 1.18 | 0.79 | 0.82 | 1.27 | 2445 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZR | 24775 | 2024-04-05 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.17 | 0.00 | 2.285 | 5.04 | 0.35 | 0.0 | 100.0 | 0.0 | 6.38 | 0.31 | 0.82 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C8P | 16490 | 2024-04-05 | 2023-01-20 | 4.1 | 5.09 | 4.13 | 5.5 | 0.002 | 0.67 | 0.0 | 0.05 | 13.50 | 0.00 | 2.267 | 6.06 | 0.00 | 2.6 | 97.4 | 0.0 | -2.08 | 0.66 | 0.67 | — | 5.0 | 0.004 | 0.74 | 0.0 | 0.05 | 13.71 | 0.00 | 2.115 | 22.57 | 0.00 | 8.1 | 91.9 | 0.0 | -1.12 | 1.09 | 0.68 | 0.73 | — | 2449 | 314 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZT | 24777 | 2024-04-05 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.53 | 0.00 | 2.337 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.28 | 0.23 | 0.80 | 0.83 | 2.93 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oT3 | 17167 | 2024-04-05 | 2023-04-20 | 2.73 | 3.21 | 2.60 | 3.2 | 0.014 | 2.33 | 0.0 | 0.13 | 16.88 | 0.01 | 2.559 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | -3.27 | 0.52 | 0.76 | 7.19 | 3.2 | 0.004 | 0.82 | 0.0 | 0.05 | 16.37 | 0.00 | 2.121 | 7.45 | 3.57 | 3.8 | 96.2 | 0.0 | -3.57 | 1.86 | 0.42 | 0.79 | 7.38 | 2460 | 336 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oT1 | 17166 | 2024-04-05 | 2023-04-20 | 2.59 | 3.30 | 2.25 | 3.4 | 0.013 | 2.40 | 0.0 | 0.13 | 17.35 | 0.01 | 2.477 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | -3.37 | 0.47 | 0.69 | 6.48 | 3.4 | 0.005 | 0.95 | 0.0 | 0.05 | 16.67 | 0.00 | 2.061 | 15.50 | 4.37 | 7.1 | 92.9 | 0.0 | -1.96 | 1.53 | 0.39 | 0.73 | 5.57 | 2460 | 336 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G8E | 29846 | 2024-04-05 | 2023-02-17 | 4.2 | 7.38 | 5.01 | 5.9 | 0.004 | 0.73 | 0.0 | 0.04 | 28.39 | 0.00 | 2.277 | 15.90 | 0.79 | 1.5 | 98.5 | 0.0 | 0.35 | 0.81 | 0.66 | — | 6.0 | 0.003 | 0.63 | 0.0 | 0.03 | 27.96 | 0.00 | 2.242 | 14.99 | 0.00 | 2.9 | 97.1 | 0.0 | 0.05 | 1.83 | 0.91 | 0.82 | — | 2464 | 140 | 3 | 64 | 0 | 0 | 0 | logfile |
✔ | 8Di5 | 27439 | 2024-04-05 | 2022-06-28 | 3.04 | 3.55 | 3.03 | 3.5 | 0.006 | 0.95 | 0.0 | 0.06 | 12.40 | 0.01 | 2.300 | 4.17 | 0.38 | 3.3 | 96.7 | 0.0 | -2.40 | 0.65 | 0.80 | 4.29 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 15.51 | 0.00 | 2.237 | 10.85 | 1.89 | 2.9 | 97.1 | 0.0 | -1.39 | 0.51 | 0.64 | 0.80 | 3.64 | 2467 | 311 | 3 | 0 | 1 | 0 | 0 | logfile |