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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PXV | 20522 | 2024-03-17 | 2019-07-27 | 3.2 | 3.81 | — | 3.3 | 0.010 | 1.39 | 8.0 | 0.09 | 10.11 | 0.01 | 2.127 | 8.05 | 0.36 | 9.3 | 89.1 | 1.6 | -3.83 | 0.77 | 0.74 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14774 | 1830 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FXi | 29534 | 2024-03-21 | 2023-01-24 | 2.7 | 2.87 | 2.84 | 2.9 | 0.014 | 2.10 | 93.0 | 0.12 | 13.25 | 0.02 | 1.801 | 6.73 | 3.12 | 7.1 | 92.1 | 0.8 | -1.18 | 0.53 | 0.65 | 2.55 | 2.8 | 0.002 | 0.59 | 0.0 | 0.05 | 15.20 | 0.00 | 2.146 | 3.57 | 2.03 | 5.9 | 93.8 | 0.2 | -0.74 | 0.87 | 0.74 | 0.82 | 2.48 | 29641 | 3684 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 8Bo2 | 16138 | 2024-03-16 | 2022-11-14 | 3.1 | 3.79 | 3.14 | 3.5 | 0.017 | 1.94 | 10.0 | 0.11 | 14.14 | 0.02 | 2.505 | 4.29 | 0.47 | 6.7 | 93.2 | 0.1 | -0.67 | 0.59 | 0.53 | 2.30 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.76 | 0.00 | 2.099 | 14.32 | 2.15 | 5.6 | 94.2 | 0.2 | -0.57 | 1.10 | 0.77 | 0.80 | 1.51 | 14037 | 1803 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ET2 | 28584 | 2024-03-24 | 2022-10-15 | 4.96 | 5.56 | 5.14 | 5.6 | 0.004 | 1.00 | 0.0 | 0.05 | 13.70 | 0.01 | 1.879 | 23.18 | 0.00 | 11.7 | 88.3 | 0.0 | -4.06 | 0.69 | 0.49 | — | 5.5 | 0.003 | 0.80 | 0.0 | 0.05 | 13.75 | 0.00 | 1.987 | 16.56 | 0.00 | 9.5 | 90.5 | 0.0 | -3.48 | 0.68 | 0.69 | 0.48 | — | 43584 | 5304 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WD5 | 21624 | 2024-03-01 | 2020-03-31 | 3.6 | 3.95 | 3.98 | 3.8 | 0.006 | 0.94 | 0.0 | 0.08 | 22.09 | 0.01 | 1.312 | 11.60 | 0.77 | 11.6 | 86.5 | 2.0 | -4.87 | 0.83 | 0.83 | 1.21 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 23.38 | 0.00 | 2.034 | 21.44 | 6.80 | 10.9 | 89.0 | 0.2 | -2.50 | 0.66 | 0.84 | 0.84 | 0.86 | 153135 | 6400 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 7WN1 | 32619 | 2024-03-10 | 2022-01-17 | 3.11 | 3.41 | — | 3.3 | 0.007 | 0.65 | 0.0 | 0.04 | 13.83 | 0.00 | 2.246 | 7.77 | 0.00 | 3.7 | 96.3 | 0.0 | 1.00 | 0.64 | 0.87 | 3.64 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 15.99 | 0.00 | 2.143 | 8.41 | 3.02 | 3.7 | 96.3 | 0.0 | 1.84 | 0.89 | 0.65 | 0.89 | 3.19 | 3901 | 493 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7MSZ | 23972 | 2024-03-28 | 2021-05-12 | 3.1 | 2.44 | — | 2.9 | 0.013 | 1.14 | 1.0 | 0.06 | 22.78 | 0.01 | 1.949 | 3.55 | 0.54 | 9.3 | 90.6 | 0.1 | -4.96 | 0.83 | 0.84 | 3.69 | 2.9 | 0.008 | 0.78 | 0.0 | 0.04 | 22.66 | 0.01 | 1.764 | 8.48 | 4.69 | 8.4 | 91.5 | 0.1 | -2.28 | 0.46 | 0.83 | 0.85 | 2.69 | 152345 | 6171 | 72 | 4836 | 427 | 0 | 0 | logfile |
✔ | 6PNS | 20398 | 2024-03-17 | 2019-07-03 | 3.7 | 4.01 | — | 3.8 | 0.006 | 0.81 | 0.0 | 0.05 | 14.52 | 0.01 | 2.224 | 4.04 | 0.50 | 6.2 | 93.7 | 0.0 | -5.56 | 0.46 | 0.89 | 2.43 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 16.17 | 0.00 | 2.093 | 9.19 | 3.53 | 4.9 | 95.1 | 0.0 | -0.96 | 4.12 | 0.44 | 0.89 | 1.77 | 81300 | 10064 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MYY | 9294 | 2024-03-18 | 2018-11-02 | 3.8 | 3.92 | — | 3.8 | 0.015 | 1.37 | 0.0 | 0.09 | 18.20 | 0.00 | 2.302 | 1.19 | 0.30 | 3.3 | 96.5 | 0.1 | -0.23 | 0.76 | 0.80 | 1.97 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 12.54 | 0.00 | 2.125 | 8.58 | 1.69 | 3.1 | 96.8 | 0.1 | 0.49 | 1.51 | 0.77 | 0.81 | 2.12 | 20139 | 2307 | 54 | 0 | 156 | 0 | 0 | logfile |
✔ | 7Y6T | 33647 | 2024-03-20 | 2022-06-21 | 4.2 | 7.23 | 4.41 | 4.1 | 0.008 | 0.97 | 0.0 | 0.06 | 19.09 | 0.01 | 2.044 | 40.32 | 0.41 | 9.2 | 90.4 | 0.4 | -1.76 | 0.90 | 0.70 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.05 | 14.00 | 0.00 | 2.042 | 29.50 | 0.00 | 9.6 | 90.1 | 0.3 | -1.67 | 1.54 | 0.90 | 0.70 | — | 27988 | 3446 | 40 | 0 | 115 | 0 | 0 | logfile |
✔ | 7M71 | 23707 | 2024-03-11 | 2021-03-26 | 2.66 | 3.67 | 2.73 | 3.0 | 0.013 | 1.86 | 5.0 | 0.11 | 12.98 | 0.02 | 2.531 | 0.08 | 0.41 | 5.0 | 95.0 | 0.0 | -0.93 | 0.52 | 0.79 | 3.87 | 3.0 | 0.002 | 0.62 | 0.0 | 0.04 | 13.65 | 0.00 | 2.177 | 6.89 | 0.68 | 3.1 | 96.9 | 0.0 | -0.17 | 1.34 | 0.59 | 0.90 | 3.75 | 6646 | 852 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7CZW | 30519 | 2024-03-21 | 2020-09-09 | 2.8 | 2.87 | — | 2.8 | 0.011 | 1.00 | 0.0 | 0.07 | 17.56 | 0.01 | 1.981 | 18.20 | 11.42 | 10.0 | 88.8 | 1.2 | -3.75 | 0.66 | 0.74 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31004 | 3880 | 31 | 0 | 70 | 0 | 0 | logfile |
✔ | 7T6J | 25716 | 2024-03-18 | 2021-12-14 | 3.2 | 3.40 | — | 3.4 | 0.005 | 1.09 | 2.0 | 0.06 | 14.92 | 0.01 | 2.340 | 3.85 | 0.05 | 3.2 | 96.7 | 0.2 | -3.33 | 0.70 | 0.87 | 2.58 | 3.4 | 0.002 | 0.57 | 0.0 | 0.04 | 16.52 | 0.00 | 2.183 | 7.47 | 1.29 | 2.6 | 97.4 | 0.0 | 1.52 | 0.93 | 0.72 | 0.90 | 2.08 | 19412 | 2424 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FWK | 29511 | 2024-03-14 | 2023-01-22 | 3.5 | 4.25 | 3.71 | 4.0 | 0.005 | 1.07 | 2.0 | 0.06 | 12.40 | 0.01 | 2.289 | 13.87 | 1.29 | 11.6 | 87.2 | 1.2 | -4.60 | 0.66 | 0.72 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9462 | 1194 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AG8 | 11776 | 2024-03-15 | 2020-09-21 | 2.68 | 3.30 | 2.85 | 3.2 | 0.005 | 0.65 | 0.0 | 0.04 | 13.13 | 0.00 | 2.220 | 6.49 | 0.37 | 4.2 | 95.7 | 0.1 | -0.60 | 0.65 | 0.79 | 4.14 | 3.2 | 0.002 | 0.51 | 0.0 | 0.04 | 14.26 | 0.00 | 2.146 | 6.02 | 0.82 | 3.7 | 96.2 | 0.1 | 0.41 | 0.87 | 0.68 | 0.82 | 3.29 | 10922 | 1417 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7ZJG | 14747 | 2024-03-18 | 2022-04-11 | 3.49 | 3.94 | 3.50 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 13.03 | 0.00 | 2.241 | 9.59 | 0.52 | 8.3 | 91.3 | 0.3 | -0.33 | 0.65 | 0.75 | 1.88 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 15.21 | 0.00 | 2.113 | 12.39 | 2.54 | 8.5 | 91.2 | 0.3 | -0.07 | 0.58 | 0.66 | 0.80 | 1.71 | 19532 | 2396 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TCP | 8398 | 2024-03-16 | 2016-09-15 | 4.3 | 3.93 | — | 4.0 | 0.013 | 1.38 | 0.0 | 0.07 | 9.90 | 0.01 | 2.479 | 0.74 | 0.00 | 3.5 | 95.5 | 1.1 | -0.87 | 0.77 | 0.79 | — | 4.0 | 0.002 | 0.55 | 0.0 | 0.04 | 12.64 | 0.00 | 2.187 | 6.29 | 0.00 | 2.8 | 96.9 | 0.3 | 1.98 | 0.85 | 0.79 | 0.84 | — | 72888 | 9072 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AGG | 11779 | 2024-03-11 | 2020-09-22 | 3.3 | 3.68 | — | 3.6 | 0.007 | 0.79 | 0.0 | 0.05 | 13.16 | 0.01 | 1.980 | 6.95 | 0.00 | 4.2 | 95.8 | 0.0 | -1.18 | 0.83 | 0.80 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8252 | 1056 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FML | 4277 | 2024-03-24 | 2018-01-31 | 4.34 | 4.43 | — | 4.3 | 0.009 | 1.01 | 1.0 | 0.06 | 16.66 | 0.01 | 2.165 | 5.04 | 0.13 | 6.7 | 93.2 | 0.1 | -3.82 | 0.86 | 0.79 | — | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 18.20 | 0.00 | 2.033 | 16.09 | 0.03 | 6.5 | 93.4 | 0.0 | -1.03 | 2.33 | 0.88 | 0.83 | — | 43460 | 4738 | 27 | 288 | 95 | 0 | 0 | logfile |
✔ | 6FHS | 4264 | 2024-03-20 | 2018-01-15 | 3.754 | 3.89 | — | 3.8 | 0.005 | 0.85 | 0.0 | 0.05 | 9.83 | 0.01 | 2.249 | 4.22 | 0.00 | 6.5 | 93.5 | 0.0 | -4.29 | 0.79 | 0.84 | 2.40 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 13.91 | 0.00 | 2.159 | 8.83 | 1.99 | 5.0 | 95.0 | 0.0 | -0.93 | 0.72 | 0.81 | 0.85 | 1.66 | 27383 | 3510 | 17 | 0 | 7 | 0 | 0 | logfile |