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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8UBR | 42101 | 2024-03-14 | 2023-09-24 | 2.7 | 2.07 | 2.73 | 2.6 | 0.008 | 0.89 | 0.0 | 0.06 | 17.65 | 0.00 | 1.887 | 3.81 | 0.10 | 1.8 | 98.2 | 0.0 | 0.76 | 0.61 | 0.83 | 2.22 | 2.6 | 0.002 | 0.56 | 0.0 | 0.04 | 17.98 | 0.00 | 2.015 | 3.86 | 2.76 | 1.6 | 98.4 | 0.0 | 1.85 | 0.82 | 0.61 | 0.84 | 2.88 | 9440 | 1156 | 2 | 0 | 9 | 4 | 0 | logfile |
✔ | 5VZL | 8749 | 2024-03-16 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 17.27 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.61 | 0.0 | 0.04 | 17.87 | 0.00 | 1.222 | 10.54 | 1.58 | 4.2 | 95.8 | 0.0 | -0.94 | 1.05 | 0.36 | 0.16 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7oRi | 13038 | 2024-03-17 | 2021-06-06 | 3.9 | 3.96 | — | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.42 | 0.00 | 1.911 | 9.29 | 1.30 | 3.4 | 96.6 | 0.0 | 1.23 | 0.86 | 0.85 | 2.14 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 16.22 | 0.00 | 2.165 | 9.64 | 0.97 | 3.2 | 96.8 | 0.0 | 1.51 | 0.32 | 0.86 | 0.85 | 1.97 | 17326 | 2007 | 4 | 44 | 3 | 0 | 0 | logfile |
✔ | 7BST | 30166 | 2024-03-24 | 2020-03-31 | 4.37 | 4.53 | — | 4.3 | 0.004 | 1.03 | 1.0 | 0.06 | 11.11 | 0.01 | 2.232 | 7.20 | 0.56 | 10.3 | 89.7 | 0.0 | -4.41 | 0.86 | 0.72 | — | 4.3 | 0.002 | 0.68 | 0.0 | 0.04 | 12.27 | 0.00 | 2.126 | 12.37 | 0.00 | 7.7 | 92.3 | 0.0 | -1.21 | 1.60 | 0.88 | 0.75 | — | 28266 | 3508 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPG | 14120 | 2024-03-11 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 6.89 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.4 | 0.002 | 0.65 | 0.0 | 0.04 | 12.90 | 0.00 | 2.133 | 10.06 | 0.97 | 2.7 | 97.3 | 0.0 | 1.29 | 0.79 | 0.88 | 0.75 | 0.32 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U9o | 26402 | 2024-03-11 | 2022-03-11 | 3.4 | 3.12 | 3.37 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 10.08 | 0.01 | 2.330 | 1.94 | 0.28 | 9.5 | 90.3 | 0.1 | -4.13 | 0.71 | 0.84 | 4.52 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 14.16 | 0.01 | 2.256 | 5.50 | 2.34 | 5.0 | 95.0 | 0.0 | -1.49 | 1.09 | 0.69 | 0.85 | 3.24 | 6563 | 829 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7BWM | 30233 | 2024-03-17 | 2020-04-15 | 2.9 | 2.97 | — | 2.9 | 0.005 | 0.78 | 0.0 | 0.05 | 14.24 | 0.00 | 2.048 | 7.32 | 7.21 | 5.8 | 94.0 | 0.3 | -3.28 | 0.76 | 0.85 | 4.49 | 2.9 | 0.002 | 0.60 | 0.0 | 0.04 | 15.34 | 0.00 | 2.137 | 6.73 | 2.53 | 5.0 | 95.0 | 0.0 | -0.90 | 0.88 | 0.78 | 0.87 | 3.45 | 9532 | 1219 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CRC | 30450 | 2024-03-24 | 2020-08-13 | 3.02 | 3.95 | — | 3.4 | 0.006 | 0.84 | 2.0 | 0.05 | 13.01 | 0.00 | 2.167 | 11.57 | 1.04 | 8.4 | 91.3 | 0.2 | -1.56 | 0.90 | 0.85 | 2.57 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 14.18 | 0.00 | 2.106 | 9.37 | 1.21 | 6.1 | 93.7 | 0.2 | -0.47 | 0.40 | 0.90 | 0.86 | 1.85 | 43168 | 5388 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XFA | 22168 | 2024-03-22 | 2020-06-15 | 3.6 | 3.70 | — | 3.6 | 0.006 | 0.66 | 0.0 | 0.05 | 14.34 | 0.00 | 2.205 | 5.84 | 0.57 | 8.0 | 92.0 | 0.0 | -3.71 | 0.81 | 0.85 | 2.34 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 15.72 | 0.00 | 2.132 | 6.03 | 1.79 | 4.9 | 95.1 | 0.0 | 0.12 | 0.47 | 0.79 | 0.86 | 1.89 | 31730 | 4060 | 20 | 0 | 20 | 0 | 0 | logfile |
✔ | 7R14 | 14230 | 2024-03-19 | 2022-02-02 | 3.4 | 3.52 | 3.53 | 3.5 | 0.005 | 0.66 | 0.0 | 0.05 | 14.65 | 0.00 | 2.127 | 5.72 | 0.08 | 8.2 | 91.7 | 0.1 | -1.58 | 0.79 | 0.85 | 2.89 | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 14.12 | 0.00 | 2.216 | 4.84 | 1.56 | 5.9 | 94.1 | 0.0 | -0.81 | 0.33 | 0.78 | 0.86 | 2.50 | 23649 | 2939 | 15 | 0 | 50 | 1 | 0 | logfile |
✔ | 7EKM | 31170 | 2024-03-14 | 2021-04-05 | 3.6 | 3.84 | — | 3.9 | 0.005 | 1.19 | 0.0 | 0.05 | 13.13 | 0.01 | 2.215 | 6.00 | 4.77 | 6.4 | 92.9 | 0.7 | -4.90 | 0.65 | 0.75 | 2.32 | 3.8 | 0.002 | 0.67 | 0.0 | 0.04 | 15.07 | 0.00 | 2.317 | 5.51 | 1.76 | 4.3 | 95.7 | 0.0 | -1.85 | 1.19 | 0.69 | 0.82 | 1.40 | 9124 | 1162 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E7S | 31003 | 2024-03-11 | 2021-02-27 | 3.3 | 3.32 | 3.27 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.41 | 0.00 | 2.166 | 8.26 | 0.00 | 2.6 | 97.4 | 0.0 | -0.13 | 0.68 | 0.82 | 1.44 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 15.94 | 0.00 | 2.211 | 8.64 | 1.26 | 3.2 | 96.8 | 0.0 | 1.44 | 1.28 | 0.65 | 0.82 | 0.60 | 7884 | 1020 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7MR2 | 23954 | 2024-03-17 | 2021-05-07 | 4.3 | 4.72 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 14.96 | 0.01 | 2.257 | 5.77 | 0.00 | 5.1 | 94.9 | 0.0 | -1.32 | 0.90 | 0.84 | — | 4.5 | 0.002 | 0.55 | 0.0 | 0.04 | 14.95 | 0.00 | 2.178 | 9.67 | 0.06 | 4.6 | 95.4 | 0.0 | 0.26 | 0.30 | 0.90 | 0.84 | — | 16671 | 2075 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EoS | 31229 | 2024-03-19 | 2021-04-22 | 3.9 | 4.43 | — | 3.9 | 0.002 | 0.42 | 0.0 | 0.04 | 9.75 | 0.00 | 2.254 | 6.49 | 1.89 | 4.1 | 95.8 | 0.1 | 0.47 | 0.88 | 0.78 | 1.32 | 4.0 | 0.002 | 0.65 | 0.0 | 0.04 | 12.37 | 0.00 | 2.048 | 12.13 | 1.93 | 5.5 | 94.4 | 0.1 | -0.39 | 1.68 | 0.90 | 0.82 | 1.19 | 24600 | 3106 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8JMA | 36411 | 2024-03-19 | 2023-06-04 | 2.5 | 2.43 | 2.54 | 2.6 | 0.004 | 0.51 | 0.0 | 0.04 | 16.39 | 0.00 | 2.210 | 4.35 | 0.61 | 1.3 | 98.7 | 0.0 | 3.05 | 0.61 | 0.81 | 3.53 | 2.6 | 0.002 | 0.42 | 0.0 | 0.03 | 16.45 | 0.00 | 2.187 | 3.70 | 0.61 | 1.3 | 98.7 | 0.0 | 3.33 | 0.19 | 0.60 | 0.81 | 3.52 | 24568 | 1524 | 8 | 0 | 4 | 0 | 12472 | logfile |
✔ | 7MR0 | 23952 | 2024-03-17 | 2021-05-07 | 3.7 | 4.10 | — | 4.0 | 0.003 | 0.81 | 0.0 | 0.05 | 15.13 | 0.01 | 2.284 | 4.14 | 0.44 | 5.8 | 94.2 | 0.0 | -1.82 | 0.84 | 0.82 | 1.66 | 4.0 | 0.002 | 0.56 | 0.0 | 0.04 | 16.25 | 0.00 | 2.202 | 7.15 | 1.46 | 5.8 | 94.2 | 0.0 | 0.00 | 0.31 | 0.84 | 0.83 | 1.81 | 19282 | 2400 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WKN | 21705 | 2024-03-17 | 2020-04-16 | 3.46 | 3.36 | 3.47 | 3.3 | 0.007 | 0.74 | 0.0 | 0.04 | 15.69 | 0.01 | 2.264 | 6.06 | 4.53 | 4.0 | 96.0 | 0.0 | -2.93 | 0.78 | 0.81 | 2.98 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 16.91 | 0.00 | 2.175 | 8.21 | 3.20 | 3.2 | 96.8 | 0.0 | 1.19 | 0.61 | 0.79 | 0.83 | 2.87 | 19320 | 2424 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7AP9 | 11851 | 2024-03-21 | 2020-10-16 | 3.01 | 3.70 | — | 3.2 | 0.008 | 0.68 | 0.0 | 0.05 | 12.02 | 0.00 | 2.023 | 4.33 | 2.91 | 6.9 | 93.1 | 0.0 | -0.45 | 0.90 | 0.88 | 3.79 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 13.67 | 0.00 | 2.067 | 7.12 | 1.30 | 5.0 | 95.0 | 0.0 | 0.58 | 0.52 | 0.90 | 0.89 | 3.07 | 30881 | 3782 | 14 | 11 | 5 | 0 | 0 | logfile |
✔ | 7UDC | 26456 | 2024-03-15 | 2022-03-18 | 3.7 | 3.83 | 3.54 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 14.90 | 0.00 | 2.200 | 7.86 | 0.28 | 3.3 | 96.7 | 0.0 | 1.79 | 0.71 | 0.80 | 1.93 | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 16.93 | 0.00 | 2.095 | 6.69 | 1.39 | 3.2 | 96.8 | 0.0 | 2.17 | 0.36 | 0.74 | 0.82 | 1.69 | 6425 | 806 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E8G | 31018 | 2024-03-19 | 2021-03-01 | 4.5 | 3.95 | 4.35 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 13.53 | 0.00 | 2.124 | 16.97 | 0.08 | 8.2 | 91.7 | 0.1 | -1.30 | 0.79 | 0.72 | — | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 13.82 | 0.00 | 2.144 | 12.36 | 0.00 | 8.5 | 91.4 | 0.1 | -1.34 | 1.76 | 0.79 | 0.70 | — | 23528 | 2916 | 4 | 0 | 0 | 0 | 0 | logfile |