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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5YFP | 6827 | 2024-04-15 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.35 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.01 | 0.0 | 0.05 | 10.83 | 0.00 | 2.033 | 24.83 | 0.10 | 16.3 | 83.5 | 0.2 | -2.27 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRR | 11383 | 2024-04-05 | 2020-07-14 | 4.0 | 4.04 | 3.78 | 4.3 | 0.015 | 1.45 | 0.0 | 0.06 | 14.32 | 0.00 | 2.189 | 28.46 | 0.00 | 5.0 | 95.0 | 0.0 | -4.56 | 0.62 | 0.69 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.05 | 14.85 | 0.00 | 2.088 | 31.94 | 0.62 | 16.4 | 83.6 | 0.0 | -4.75 | 1.53 | 0.64 | 0.74 | — | 5724 | 414 | 18 | 0 | 0 | 0 | 2664 | logfile |
✔ | 6SH5 | 10194 | 2024-04-07 | 2019-08-05 | 4.6 | 4.70 | — | 4.5 | 0.005 | 0.97 | 0.0 | 0.05 | 5.65 | 0.01 | 2.474 | 2.35 | 0.00 | 9.0 | 91.0 | 0.0 | -3.63 | 0.80 | 0.76 | — | 4.5 | 0.004 | 0.82 | 0.0 | 0.04 | 5.28 | 0.00 | 2.265 | 5.49 | 0.00 | 16.4 | 83.6 | 0.0 | -2.90 | 1.64 | 0.82 | 0.82 | — | 11529 | 2338 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7STF | 25427 | 2024-04-05 | 2021-11-12 | 3.14 | 3.37 | — | 3.2 | 0.009 | 1.21 | 0.0 | 0.06 | 15.26 | 0.01 | 1.998 | 37.36 | 0.14 | 20.1 | 79.1 | 0.7 | -3.76 | 0.81 | 0.70 | 1.92 | 3.1 | 0.004 | 0.88 | 0.0 | 0.05 | 17.03 | 0.01 | 2.127 | 23.10 | 3.98 | 16.1 | 83.6 | 0.2 | -3.45 | 0.55 | 0.82 | 0.71 | 1.42 | 6414 | 817 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PiJ | 20351 | 2024-04-13 | 2019-06-26 | 2.9 | 3.06 | 3.01 | 3.0 | 0.013 | 1.74 | 0.0 | 0.08 | 17.35 | 0.00 | 2.277 | 3.60 | 0.66 | 14.2 | 82.4 | 3.4 | -4.59 | 0.68 | 0.80 | 3.24 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 19.02 | 0.01 | 2.067 | 12.77 | 2.90 | 15.8 | 83.7 | 0.5 | -2.47 | 1.19 | 0.74 | 0.86 | 2.93 | 29671 | 3452 | 13 | 96 | 0 | 0 | 0 | logfile |
✔ | 6iC3 | 4452 | 2024-04-05 | 2018-12-02 | 3.3 | 4.00 | — | 3.9 | 0.010 | 1.26 | 0.0 | 0.06 | 16.17 | 0.01 | 2.277 | 9.22 | 1.39 | 16.9 | 83.1 | 0.0 | -5.61 | 0.76 | 0.80 | 1.39 | 3.9 | 0.005 | 0.90 | 0.0 | 0.04 | 17.37 | 0.01 | 2.197 | 21.26 | 3.30 | 16.3 | 83.7 | 0.0 | -5.21 | 1.22 | 0.72 | 0.77 | 0.37 | 5472 | 728 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2024-04-09 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 15.31 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.003 | 0.88 | 0.0 | 0.04 | 18.43 | 0.01 | 2.050 | 20.71 | 3.46 | 15.9 | 83.7 | 0.4 | -4.02 | 1.62 | 0.60 | 0.66 | 0.51 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 7Wo7 | 32641 | 2024-04-05 | 2022-01-20 | 3.8 | 3.99 | — | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 11.24 | 0.00 | 2.163 | 6.93 | 8.82 | 9.7 | 90.3 | 0.0 | -4.70 | 0.72 | 0.74 | 1.98 | 3.9 | 0.005 | 0.76 | 0.0 | 0.05 | 15.27 | 0.01 | 2.085 | 17.63 | 6.07 | 16.2 | 83.8 | 0.0 | -3.31 | 1.79 | 0.75 | 0.77 | 2.07 | 4870 | 634 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8E14 | 27823 | 2024-04-08 | 2022-08-09 | 3.36 | 4.87 | 3.36 | 3.5 | 0.007 | 1.12 | 1.0 | 0.08 | 24.72 | 0.01 | 2.182 | 16.48 | 0.41 | 17.7 | 82.3 | 0.0 | -2.84 | 0.92 | 0.86 | 0.70 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 24.56 | 0.00 | 2.174 | 13.77 | 4.65 | 16.2 | 83.8 | 0.0 | -2.36 | 0.32 | 0.92 | 0.86 | 0.90 | 12442 | 1161 | 16 | 160 | 2 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2024-04-06 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.05 | 12.88 | 0.00 | 2.263 | 7.54 | 0.00 | 16.2 | 83.8 | 0.0 | -5.34 | 1.15 | 0.72 | 0.70 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 6i0Y | 0322 | 2024-04-14 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 23.52 | 0.01 | 0.682 | 13.02 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.006 | 0.87 | 1.0 | 0.04 | 23.22 | 0.01 | 0.938 | 24.00 | 6.89 | 14.2 | 83.8 | 2.0 | -2.91 | 1.60 | 0.61 | 0.73 | 0.64 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 7Q3U | 13795 | 2024-04-05 | 2021-10-28 | 3.7 | 3.43 | 3.48 | 4.1 | 0.005 | 1.17 | 0.0 | 0.05 | 16.84 | 0.01 | 2.120 | 36.48 | 0.00 | 10.7 | 89.3 | 0.0 | -5.79 | 0.23 | 0.47 | 0.88 | 4.0 | 0.005 | 0.94 | 0.0 | 0.05 | 18.90 | 0.01 | 2.184 | 31.37 | 2.38 | 16.2 | 83.8 | 0.0 | -6.09 | 2.23 | 0.34 | 0.61 | 3.33 | 2355 | 355 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NY3 | 8980 | 2024-04-07 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 22.55 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 22.53 | 0.00 | 2.124 | 11.05 | 4.28 | 16.0 | 83.8 | 0.3 | -2.02 | 0.43 | 0.67 | 0.82 | 0.64 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 7DGZ | 30676 | 2024-04-07 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.43 | 3.0 | 0.07 | 12.68 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 14.85 | 0.01 | 2.088 | 12.84 | 3.00 | 15.7 | 83.9 | 0.3 | -3.57 | 1.59 | 0.82 | 0.74 | 0.63 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 5o4U | 3746 | 2024-04-12 | 2017-05-31 | 4.2 | 4.27 | 4.23 | 4.3 | 0.007 | 1.26 | 2.0 | 0.08 | 11.28 | 0.01 | 0.586 | 15.82 | 1.75 | 17.3 | 82.7 | 0.0 | -4.67 | 0.39 | 0.70 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.05 | 12.43 | 0.01 | 2.128 | 17.51 | 0.04 | 16.1 | 83.9 | 0.0 | -2.91 | 1.33 | 0.44 | 0.74 | — | 24528 | 3312 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AST | 11904 | 2024-04-15 | 2020-10-28 | 4.0 | 3.84 | — | 3.6 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.62 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.6 | 0.016 | 0.98 | 0.0 | 0.05 | 17.70 | 0.01 | 2.094 | 26.83 | 2.78 | 15.8 | 83.9 | 0.3 | -3.72 | 1.41 | 0.63 | 0.49 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2024-04-05 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.64 | 0.0 | 0.05 | 15.65 | 0.00 | 2.268 | 13.24 | 8.85 | 16.0 | 84.0 | 0.0 | -4.39 | 2.81 | 0.38 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CTG | 26989 | 2024-04-05 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.32 | 0.01 | 2.256 | 7.71 | 1.15 | 15.6 | 84.1 | 0.3 | -3.25 | 2.05 | 0.60 | 0.45 | 1.36 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2024-04-06 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.90 | 0.0 | 0.05 | 16.67 | 0.01 | 2.017 | 24.21 | 3.48 | 15.3 | 84.1 | 0.6 | -3.68 | 0.72 | 0.23 | 0.46 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SP1 | 25364 | 2024-04-05 | 2021-11-02 | 3.4 | 3.65 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 19.39 | 0.01 | 2.288 | 11.67 | 0.00 | 2.9 | 97.1 | 0.0 | -2.42 | 0.41 | 0.72 | 4.86 | 4.1 | 0.007 | 0.95 | 0.0 | 0.06 | 19.98 | 0.01 | 2.152 | 25.13 | 3.84 | 15.9 | 84.1 | 0.0 | -4.09 | 1.67 | 0.40 | 0.76 | 4.40 | 4343 | 540 | 17 | 20 | 0 | 0 | 0 | logfile |