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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7TXJ | 26159 | 2022-07-06 | 2022-02-09 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101029 | 10912 | 124 | 744 | 0 | 0 | 0 | logfile |
✔ | 7Q5A | 13830 | 2022-07-03 | 2021-11-03 | 2.46 | 2.69 | — | 2.6 | 0.014 | 1.28 | 1600.0 | 0.06 | 11.06 | 0.00 | 2.247 | 3.06 | 0.00 | 0.0 | 100.0 | 0.0 | 0.99 | 0.66 | 0.84 | 6.72 | 2.6 | 0.054 | 4.18 | 1601.0 | 0.23 | 17.37 | 0.02 | 1.952 | 19.88 | 2.92 | 0.0 | 100.0 | 0.0 | 0.76 | 1.64 | 0.67 | 0.86 | 6.24 | 61600 | 5600 | 800 | 0 | 1600 | 0 | 0 | logfile |
✔ | 6FVW | 4322 | 2022-07-03 | 2018-03-05 | 4.5 | 4.60 | — | 4.6 | 0.035 | 3.52 | 888.0 | 0.20 | 17.57 | 0.03 | 0.436 | 3.52 | 2.98 | 5.7 | 92.3 | 2.0 | -2.29 | 0.50 | 0.54 | — | 4.6 | 0.004 | 0.84 | 0.0 | 0.05 | 15.00 | 0.01 | 1.911 | 18.19 | 0.03 | 4.6 | 95.2 | 0.2 | -0.54 | 1.86 | 0.55 | 0.76 | — | 110594 | 14032 | 59 | 0 | 12 | 20 | 0 | logfile |
✘ | 6FVX | 4323 | 2022-07-03 | 2018-03-05 | 4.9 | 4.97 | — | 4.9 | 0.036 | 3.46 | 834.0 | 0.21 | 17.27 | 0.03 | 1.000 | 2.07 | 2.81 | 5.4 | 92.9 | 1.7 | -2.42 | 0.52 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110471 | 14020 | 53 | 0 | 12 | 0 | 0 | logfile |
✘ | 3JAU | 6366 | 2022-07-04 | 2015-06-24 | 4.8 | 4.76 | — | 5.7 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 11.51 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9i | 5623 | 2022-07-07 | 2015-02-02 | 3.3 | 3.34 | 2.96 | 3.2 | 0.034 | 3.61 | 574.0 | 0.23 | 18.10 | 0.03 | 1.922 | 5.67 | 9.27 | 8.0 | 90.1 | 1.9 | -3.61 | 0.80 | 0.79 | 3.08 | 3.2 | 0.007 | 0.89 | 0.0 | 0.05 | 17.62 | 0.00 | 2.132 | 14.08 | 1.20 | 3.3 | 96.4 | 0.3 | 0.06 | 0.84 | 0.87 | 0.89 | 2.61 | 46228 | 5978 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2022-07-05 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 20.15 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.037 | 1.45 | 1.0 | 0.04 | 17.34 | 0.02 | 1.816 | 16.56 | 0.20 | 8.3 | 90.9 | 0.7 | -2.82 | 1.96 | 0.62 | 0.80 | 1.42 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-07-03 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.76 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.80 | 0.0 | 0.05 | 14.96 | 0.01 | 2.173 | 13.93 | 0.00 | 5.4 | 93.8 | 0.8 | 0.69 | 2.24 | 0.78 | 0.69 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EMY | 31198 | 2022-07-07 | 2021-04-15 | 2.97 | 3.54 | 3.03 | 3.3 | 0.037 | 2.79 | 474.0 | 0.36 | 12.05 | 0.01 | 1.209 | 3.68 | 0.88 | 4.5 | 95.5 | 0.0 | -0.76 | 0.85 | 0.79 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41020 | 2670 | 4 | 0 | 8 | 0 | 20502 | logfile |
✔ | 3J06 | 5185 | 2022-07-03 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.08 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.0 | 0.005 | 0.92 | 0.0 | 0.04 | 20.49 | 0.01 | 2.171 | 17.58 | 1.07 | 8.0 | 90.2 | 1.8 | -2.96 | 1.27 | 0.55 | 0.79 | 2.24 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 6GH5 | 0001 | 2022-07-06 | 2018-05-04 | 3.4 | 3.71 | — | 3.4 | 0.033 | 3.30 | 333.0 | 0.22 | 17.29 | 0.02 | 1.847 | 24.58 | 4.29 | 11.0 | 86.7 | 2.3 | -4.34 | 0.89 | 0.88 | 2.50 | 3.4 | 0.004 | 0.82 | 0.0 | 0.04 | 18.22 | 0.00 | 2.153 | 12.36 | 0.35 | 9.0 | 90.0 | 1.0 | -0.92 | 1.34 | 0.88 | 0.86 | 1.70 | 28316 | 3593 | 8 | 92 | 50 | 0 | 0 | logfile |
✔ | 5MPD | 3534 | 2022-07-07 | 2016-12-16 | 4.1 | 4.14 | — | 4.1 | 0.035 | 3.40 | 330.0 | 0.20 | 17.76 | 0.03 | 0.656 | 3.85 | 2.78 | 5.6 | 92.3 | 2.1 | -2.14 | 0.21 | 0.37 | — | 4.1 | 0.010 | 1.18 | 2.0 | 0.05 | 15.58 | 0.01 | 1.051 | 28.38 | 0.00 | 7.6 | 92.2 | 0.3 | -1.78 | 1.92 | 0.28 | 0.63 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MPE | 3535 | 2022-07-07 | 2016-12-16 | 4.5 | 4.55 | — | 4.5 | 0.034 | 3.32 | 297.0 | 0.19 | 17.16 | 0.03 | 1.158 | 3.98 | 2.25 | 5.2 | 92.6 | 2.2 | -1.86 | 0.28 | 0.39 | — | 4.5 | 0.004 | 0.87 | 0.0 | 0.04 | 14.95 | 0.00 | 2.008 | 22.40 | 0.02 | 6.2 | 93.4 | 0.3 | -1.12 | 2.47 | 0.36 | 0.68 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoT | 32658 | 2022-07-06 | 2022-01-22 | 3.73 | 4.26 | — | 3.8 | 0.010 | 1.69 | 284.0 | 0.10 | 15.82 | 0.01 | 1.016 | 24.11 | 4.41 | 9.4 | 88.4 | 2.2 | -3.07 | 0.49 | 0.33 | 0.06 | 3.9 | 0.009 | 1.00 | 2.0 | 0.05 | 16.48 | 0.01 | 1.624 | 22.10 | 0.13 | 9.9 | 89.8 | 0.3 | -1.23 | 1.08 | 0.56 | 0.44 | 0.23 | 133827 | 17285 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G06 | 3366 | 2022-07-05 | 2016-03-17 | 4.2 | 4.89 | — | 4.7 | 0.036 | 3.53 | 246.0 | 0.21 | 17.03 | 0.03 | 1.189 | 3.07 | 3.01 | 5.9 | 92.3 | 1.9 | -2.39 | 0.66 | 0.46 | — | 4.7 | 0.004 | 0.76 | 0.0 | 0.04 | 14.53 | 0.00 | 2.109 | 18.85 | 0.03 | 4.4 | 95.5 | 0.1 | -0.63 | 1.79 | 0.88 | 0.79 | — | 26794 | 3420 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YL3 | 10835 | 2022-07-10 | 2020-04-06 | 1.98 | 2.04 | 1.99 | 2.0 | 0.067 | 3.60 | 246.0 | 0.36 | 16.35 | 0.02 | 1.877 | 4.58 | 2.74 | 5.3 | 94.4 | 0.4 | -2.46 | 0.78 | 0.83 | 6.40 | 2.0 | 0.006 | 0.81 | 0.0 | 0.05 | 16.29 | 0.01 | 1.664 | 5.82 | 1.62 | 4.1 | 95.8 | 0.1 | -0.24 | 0.52 | 0.81 | 0.86 | 7.07 | 150156 | 9552 | 84 | 0 | 24 | 3672 | 73044 | logfile |
✔ | 7BP0 | 30138 | 2022-07-07 | 2020-03-20 | 4.6 | 4.05 | — | 4.2 | 0.014 | 2.51 | 229.0 | 0.17 | 20.41 | 0.02 | 1.115 | 151.43 | 28.18 | 10.1 | 84.8 | 5.1 | -1.64 | 0.62 | 0.71 | — | 4.2 | 0.004 | 1.06 | 0.0 | 0.05 | 15.03 | 0.01 | 2.103 | 20.38 | 0.00 | 13.0 | 86.1 | 0.9 | -2.72 | 1.43 | 0.60 | 0.68 | — | 41388 | 5244 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-07-03 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 88.10 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.007 | 1.33 | 0.0 | 0.05 | 16.09 | 0.01 | 1.037 | 31.44 | 0.00 | 20.2 | 75.6 | 4.2 | -4.47 | 1.32 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2022-07-04 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.66 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.71 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 1.16 | 0.0 | 0.04 | 8.22 | 0.00 | 2.233 | 4.75 | 0.32 | 11.9 | 86.0 | 2.1 | -1.61 | 0.83 | 0.74 | 0.72 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HE7 | 0211 | 2022-07-05 | 2018-08-20 | 3.69 | 3.80 | — | 3.8 | 0.039 | 3.60 | 213.0 | 0.21 | 17.65 | 0.03 | 2.081 | 3.03 | 4.93 | 5.6 | 92.9 | 1.6 | -2.44 | 0.64 | 0.70 | 2.28 | 3.8 | 0.012 | 0.89 | 0.0 | 0.05 | 17.48 | 0.00 | 1.904 | 14.13 | 0.16 | 3.1 | 96.8 | 0.1 | -0.09 | 0.88 | 0.63 | 0.78 | 1.62 | 23821 | 3059 | 14 | 0 | 0 | 0 | 0 | logfile |