Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7TXJ	26159	2022-07-06	2022-02-09	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101029	10912	124	744	0	0	0	logfile
✔	7Q5A	13830	2022-07-03	2021-11-03	2.46	2.69	—	2.6	0.014	1.28	1600.0	0.06	11.06	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.054	4.18	1601.0	0.23	17.37	0.02	1.952	19.88	2.92	0.0	100.0	0.0	0.76	1.64	0.67	0.86	6.24	61600	5600	800	0	1600	0	0	logfile
✔	6FVW	4322	2022-07-03	2018-03-05	4.5	4.60	—	4.6	0.035	3.52	888.0	0.20	17.57	0.03	0.436	3.52	2.98	5.7	92.3	2.0	-2.29	0.50	0.54	—	4.6	0.004	0.84	0.0	0.05	15.00	0.01	1.911	18.19	0.03	4.6	95.2	0.2	-0.54	1.86	0.55	0.76	—	110594	14032	59	0	12	20	0	logfile
✘	6FVX	4323	2022-07-03	2018-03-05	4.9	4.97	—	4.9	0.036	3.46	834.0	0.21	17.27	0.03	1.000	2.07	2.81	5.4	92.9	1.7	-2.42	0.52	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110471	14020	53	0	12	0	0	logfile
✘	3JAU	6366	2022-07-04	2015-06-24	4.8	4.76	—	5.7	0.027	2.66	660.0	0.16	14.74	0.02	1.686	11.51	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114900	14700	180	0	0	0	0	logfile
✔	3J9i	5623	2022-07-07	2015-02-02	3.3	3.34	2.96	3.2	0.034	3.61	574.0	0.23	18.10	0.03	1.922	5.67	9.27	8.0	90.1	1.9	-3.61	0.80	0.79	3.08	3.2	0.007	0.89	0.0	0.05	17.62	0.00	2.132	14.08	1.20	3.3	96.4	0.3	0.06	0.84	0.87	0.89	2.61	46228	5978	28	0	0	0	0	logfile
✔	4V91	2599	2022-07-05	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	20.15	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.037	1.45	1.0	0.04	17.34	0.02	1.816	16.56	0.20	8.3	90.9	0.7	-2.82	1.96	0.62	0.80	1.42	125665	6450	45	3482	0	0	0	logfile
✔	3J1B	5391	2022-07-03	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.80	0.0	0.05	14.96	0.01	2.173	13.93	0.00	5.4	93.8	0.8	0.69	2.24	0.78	0.69	—	62992	8304	16	0	0	0	0	logfile
✘	7EMY	31198	2022-07-07	2021-04-15	2.97	3.54	3.03	3.3	0.037	2.79	474.0	0.36	12.05	0.01	1.209	3.68	0.88	4.5	95.5	0.0	-0.76	0.85	0.79	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41020	2670	4	0	8	0	20502	logfile
✔	3J06	5185	2022-07-03	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.005	0.92	0.0	0.04	20.49	0.01	2.171	17.58	1.07	8.0	90.2	1.8	-2.96	1.27	0.55	0.79	2.24	62916	7595	98	147	0	0	0	logfile
✔	6GH5	0001	2022-07-06	2018-05-04	3.4	3.71	—	3.4	0.033	3.30	333.0	0.22	17.29	0.02	1.847	24.58	4.29	11.0	86.7	2.3	-4.34	0.89	0.88	2.50	3.4	0.004	0.82	0.0	0.04	18.22	0.00	2.153	12.36	0.35	9.0	90.0	1.0	-0.92	1.34	0.88	0.86	1.70	28316	3593	8	92	50	0	0	logfile
✔	5MPD	3534	2022-07-07	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.010	1.18	2.0	0.05	15.58	0.01	1.051	28.38	0.00	7.6	92.2	0.3	-1.78	1.92	0.28	0.63	—	40974	5142	13	0	0	0	0	logfile
✔	5MPE	3535	2022-07-07	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.98	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.004	0.87	0.0	0.04	14.95	0.00	2.008	22.40	0.02	6.2	93.4	0.3	-1.12	2.47	0.36	0.68	—	40974	5142	13	0	0	0	0	logfile
✔	7WoT	32658	2022-07-06	2022-01-22	3.73	4.26	—	3.8	0.010	1.69	284.0	0.10	15.82	0.01	1.016	24.11	4.41	9.4	88.4	2.2	-3.07	0.49	0.33	0.06	3.9	0.009	1.00	2.0	0.05	16.48	0.01	1.624	22.10	0.13	9.9	89.8	0.3	-1.23	1.08	0.56	0.44	0.23	133827	17285	24	0	0	0	0	logfile
✔	5G06	3366	2022-07-05	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.07	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.004	0.76	0.0	0.04	14.53	0.00	2.109	18.85	0.03	4.4	95.5	0.1	-0.63	1.79	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	6YL3	10835	2022-07-10	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.58	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.006	0.81	0.0	0.05	16.29	0.01	1.664	5.82	1.62	4.1	95.8	0.1	-0.24	0.52	0.81	0.86	7.07	150156	9552	84	0	24	3672	73044	logfile
✔	7BP0	30138	2022-07-07	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	4.2	0.004	1.06	0.0	0.05	15.03	0.01	2.103	20.38	0.00	13.0	86.1	0.9	-2.72	1.43	0.60	0.68	—	41388	5244	12	0	0	0	0	logfile
✔	3LoS	5137	2022-07-03	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.44	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	5J8V	8073	2022-07-04	2016-04-08	4.9	4.81	—	4.7	0.024	2.66	214.0	0.16	10.17	0.01	1.145	73.71	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	1.16	0.0	0.04	8.22	0.00	2.233	4.75	0.32	11.9	86.0	2.1	-1.61	0.83	0.74	0.72	—	73616	13812	4	0	0	0	0	logfile
✔	6HE7	0211	2022-07-05	2018-08-20	3.69	3.80	—	3.8	0.039	3.60	213.0	0.21	17.65	0.03	2.081	3.03	4.93	5.6	92.9	1.6	-2.44	0.64	0.70	2.28	3.8	0.012	0.89	0.0	0.05	17.48	0.00	1.904	14.13	0.16	3.1	96.8	0.1	-0.09	0.88	0.63	0.78	1.62	23821	3059	14	0	0	0	0	logfile

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