Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7SoC	25266	2022-11-29	2021-10-29	3.3	3.48	3.25	3.5	0.010	1.21	0.0	0.07	10.55	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3448	433	5	0	7	0	0	logfile
✔	7QES	13939	2022-11-29	2021-12-03	2.6	3.37	—	3.0	0.009	0.66	0.0	0.04	13.87	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.61	0.0	0.04	15.28	0.00	2.162	3.90	0.91	3.1	96.9	0.0	2.67	1.25	0.78	0.86	2.82	3076	366	6	0	10	14	0	logfile
✔	7P65	13218	2022-11-29	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.48	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.007	0.70	0.0	0.05	15.71	0.00	2.309	5.67	1.26	3.3	96.7	0.0	-2.84	0.47	0.48	0.88	5.48	4145	550	5	0	0	0	0	logfile
✔	6X2Z	22014	2022-11-29	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.19	0.00	2.185	9.85	0.85	3.1	96.9	0.0	0.73	0.96	0.43	0.86	2.16	3205	420	1	0	3	0	0	logfile
✔	7QEV	13942	2022-11-29	2021-12-03	2.9	3.46	—	3.1	0.010	0.74	0.0	0.05	13.76	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.66	0.0	0.04	15.95	0.00	2.153	5.61	1.17	2.9	97.1	0.0	2.25	1.67	0.79	0.86	2.57	3204	383	6	0	8	8	0	logfile
✔	7QVC	14174	2022-11-29	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.005	0.75	0.0	0.06	17.90	0.00	2.135	8.46	3.70	5.3	94.7	0.0	-2.31	2.44	0.42	0.89	6.07	3255	405	3	0	0	0	0	logfile
✔	6M7D	30129	2022-11-29	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.64	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.003	0.53	0.0	0.04	15.81	0.00	2.240	9.20	2.62	1.2	98.8	0.0	1.93	0.83	0.35	0.87	2.88	3280	412	2	6	0	0	0	logfile
✔	7M7B	23709	2022-11-29	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.09	0.02	2.512	0.31	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4898	635	4	0	2	0	0	logfile
✔	7QK2	14029	2022-11-29	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.76	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.99	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	7P6A	13223	2022-11-29	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7QKM	14047	2022-11-29	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5070	330	6	0	0	0	2634	logfile
✔	7SoD	25267	2022-11-29	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.22	0.0	0.07	9.29	0.01	2.129	0.53	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.60	0.0	0.05	12.91	0.00	2.283	3.87	0.25	3.7	96.3	0.0	0.95	1.54	0.71	0.91	5.36	3830	473	5	0	7	0	0	logfile
✔	7VQQ	32092	2022-11-29	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	7QV6	14168	2022-11-29	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4842	306	18	0	0	0	2556	logfile
✔	7QiG	13989	2022-11-29	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.003	0.64	0.0	0.05	17.69	0.00	2.142	6.24	0.87	10.0	90.0	0.0	-4.21	0.62	0.38	0.87	5.81	3213	396	3	0	0	0	0	logfile
✔	6XPD	22285	2022-11-29	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.82	0.00	1.978	10.69	0.78	5.1	94.9	0.0	1.30	1.38	0.60	0.83	2.30	4622	606	4	0	4	0	0	logfile
✔	7P6B	13224	2022-11-29	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	6NT7	0504	2022-11-29	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.006	0.75	0.0	0.04	15.86	0.00	2.209	10.97	0.78	4.6	95.4	0.0	0.58	1.19	0.76	0.85	—	4729	588	3	0	1	0	0	logfile
✔	6UWF	20922	2022-11-29	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.17	0.00	2.243	6.88	0.00	3.4	96.6	0.0	1.17	0.32	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	7UL5	26592	2022-11-29	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.36	0.00	2.338	1.47	0.37	1.4	98.6	0.0	2.78	0.29	0.66	0.87	3.19	2773	371	2	0	0	0	0	logfile

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