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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PoM | 20416 | 2023-02-17 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.46 | 0.01 | 1.930 | 61.80 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.76 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6TG9 | 10495 | 2023-02-25 | 2019-11-15 | 3.24 | 3.34 | — | 3.3 | 0.016 | 1.33 | 0.0 | 0.06 | 14.65 | 0.00 | 1.847 | 11.53 | 0.62 | 7.8 | 92.0 | 0.2 | -4.02 | 0.80 | 0.78 | 3.11 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 16.26 | 0.00 | 1.975 | 10.47 | 0.23 | 5.3 | 94.5 | 0.1 | -1.22 | 0.68 | 0.83 | 0.84 | 2.89 | 25412 | 3318 | 14 | 0 | 26 | 0 | 0 | logfile |
✘ | 7ELA | 31178 | 2023-02-20 | 2021-04-09 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.25 | 0.00 | 2.153 | 11.82 | 2.79 | 7.9 | 92.1 | 0.0 | -2.61 | 0.72 | 0.78 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11791 | 1451 | 5 | 7 | 3 | 0 | 0 | logfile |
✔ | 6UX4 | 20929 | 2023-02-20 | 2019-11-06 | 3.5 | 3.60 | — | 3.6 | 0.011 | 0.83 | 0.0 | 0.06 | 13.47 | 0.01 | 2.254 | 3.37 | 0.29 | 3.9 | 96.1 | 0.0 | -4.46 | 0.67 | 0.83 | 2.86 | 3.6 | 0.005 | 0.55 | 0.0 | 0.05 | 15.02 | 0.00 | 2.091 | 7.16 | 0.51 | 4.1 | 95.9 | 0.0 | 0.10 | 1.18 | 0.68 | 0.83 | 2.21 | 13257 | 1776 | 19 | 0 | 24 | 3 | 0 | logfile |
✔ | 7SWo | 25477 | 2023-02-17 | 2021-11-20 | 4.1 | 3.78 | — | 3.8 | 0.007 | 0.89 | 0.0 | 0.05 | 14.43 | 0.01 | 2.215 | 26.02 | 0.19 | 10.0 | 90.0 | 0.0 | -2.59 | 0.65 | 0.76 | — | 3.8 | 0.003 | 0.72 | 0.0 | 0.05 | 13.81 | 0.01 | 2.118 | 18.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.25 | 0.53 | 0.64 | 0.74 | — | 4784 | 627 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW4 | 30226 | 2023-02-18 | 2020-04-13 | 3.7 | 3.92 | — | 3.8 | 0.004 | 0.66 | 1.0 | 0.05 | 15.16 | 0.00 | 2.078 | 16.25 | 1.68 | 4.3 | 95.5 | 0.2 | -2.50 | 0.77 | 0.77 | 1.82 | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 16.62 | 0.00 | 2.197 | 15.13 | 0.53 | 4.8 | 95.1 | 0.1 | -1.02 | 1.36 | 0.77 | 0.77 | 1.41 | 8605 | 1078 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 6oES | 20036 | 2023-02-22 | 2019-03-27 | 3.06 | 3.17 | — | 3.1 | 0.005 | 0.77 | 2.0 | 0.05 | 19.56 | 0.01 | 2.226 | 4.56 | 2.87 | 3.4 | 96.4 | 0.2 | -3.12 | 0.81 | 0.83 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16829 | 1784 | 14 | 128 | 4 | 2 | 0 | logfile |
✔ | 7PKo | 13474 | 2023-02-23 | 2021-08-26 | 3.9 | 4.01 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.59 | 0.00 | 2.205 | 10.80 | 0.00 | 7.5 | 92.5 | 0.0 | -4.16 | 0.76 | 0.82 | 2.59 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 16.06 | 0.00 | 2.180 | 12.19 | 0.62 | 5.6 | 94.4 | 0.0 | -0.75 | 0.64 | 0.75 | 0.81 | 2.41 | 20368 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Lo6 | 23462 | 2023-02-22 | 2021-02-09 | 3.9 | 4.03 | — | 3.8 | 0.011 | 0.94 | 0.0 | 0.07 | 13.81 | 0.01 | 1.951 | 19.52 | 0.64 | 12.9 | 87.1 | 0.0 | -5.44 | 0.85 | 0.85 | 2.14 | 3.8 | 0.004 | 0.72 | 0.0 | 0.05 | 15.31 | 0.00 | 2.095 | 11.93 | 0.69 | 6.1 | 93.9 | 0.0 | -2.21 | 1.66 | 0.85 | 0.85 | 1.65 | 18006 | 2198 | 27 | 0 | 62 | 0 | 0 | logfile |
✔ | 6N7S | 0362 | 2023-02-20 | 2018-11-28 | 4.6 | 4.47 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.07 | 14.87 | 0.01 | 1.812 | 8.33 | 1.04 | 12.5 | 87.5 | 0.0 | -5.07 | 0.69 | 0.54 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 14.71 | 0.00 | 1.879 | 15.87 | 0.00 | 5.3 | 94.7 | 0.0 | -2.15 | 1.90 | 0.71 | 0.59 | — | 12783 | 1607 | 11 | 13 | 8 | 0 | 0 | logfile |
✔ | 6o7H | 0641 | 2023-02-22 | 2019-03-07 | 2.9 | 3.03 | — | 3.0 | 0.006 | 1.10 | 0.0 | 0.07 | 12.42 | 0.01 | 1.596 | 11.46 | 1.21 | 5.3 | 94.6 | 0.1 | -4.35 | 0.74 | 0.81 | 3.78 | 3.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.45 | 0.00 | 2.155 | 8.52 | 1.99 | 4.9 | 95.1 | 0.0 | -0.40 | 0.79 | 0.74 | 0.85 | 3.03 | 17576 | 2038 | 13 | 51 | 96 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-02-21 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.5 | 0.006 | 1.23 | 0.0 | 0.06 | 14.56 | 0.01 | 1.854 | 41.71 | 0.00 | 6.7 | 93.3 | 0.0 | -3.29 | 3.82 | 0.26 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CG0 | 7470 | 2023-02-23 | 2018-02-19 | 3.17 | 3.69 | — | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 20.01 | 0.00 | 2.205 | 15.24 | 4.08 | 2.5 | 97.4 | 0.1 | -2.47 | 0.91 | 0.85 | 3.15 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 20.27 | 0.00 | 2.134 | 7.49 | 0.35 | 2.1 | 97.9 | 0.0 | 0.58 | 0.52 | 0.93 | 0.88 | 2.73 | 20080 | 1989 | 13 | 212 | 4 | 0 | 0 | logfile |
✔ | 6UWN | 20925 | 2023-02-20 | 2019-11-05 | 3.5 | 3.59 | — | 3.6 | 0.007 | 0.73 | 0.0 | 0.05 | 13.75 | 0.00 | 2.285 | 3.49 | 0.15 | 3.4 | 96.6 | 0.0 | -4.35 | 0.67 | 0.83 | 2.62 | 3.6 | 0.003 | 0.55 | 0.0 | 0.05 | 15.85 | 0.00 | 2.126 | 6.29 | 0.65 | 2.7 | 97.3 | 0.0 | 0.44 | 0.58 | 0.66 | 0.81 | 1.79 | 13258 | 1776 | 20 | 0 | 24 | 4 | 0 | logfile |
✔ | 6K9L | 9950 | 2023-02-27 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.75 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.20 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | 1.80 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T8o | 10402 | 2023-02-22 | 2019-10-24 | 3.99 | 4.07 | — | 4.0 | 0.006 | 0.91 | 0.0 | 0.05 | 12.50 | 0.01 | 2.270 | 4.39 | 0.20 | 5.8 | 94.2 | 0.0 | -4.05 | 0.79 | 0.82 | 1.99 | 4.0 | 0.004 | 0.75 | 0.0 | 0.05 | 16.30 | 0.00 | 2.091 | 13.45 | 0.65 | 5.1 | 94.9 | 0.0 | -0.43 | 1.34 | 0.80 | 0.83 | 1.40 | 18806 | 2374 | 14 | 26 | 6 | 0 | 0 | logfile |
✔ | 7ECW | 31059 | 2023-02-24 | 2021-03-13 | 3.1 | 3.18 | — | 3.2 | 0.007 | 0.89 | 1.0 | 0.06 | 16.81 | 0.01 | 1.950 | 7.43 | 1.10 | 6.1 | 93.8 | 0.1 | -3.73 | 0.75 | 0.82 | 2.64 | 3.2 | 0.002 | 0.54 | 0.0 | 0.04 | 17.52 | 0.00 | 2.221 | 6.10 | 0.14 | 5.2 | 94.8 | 0.0 | -0.27 | 1.22 | 0.76 | 0.84 | 2.08 | 23089 | 2934 | 13 | 70 | 0 | 0 | 0 | logfile |
✔ | 6Bo9 | 7121 | 2023-02-23 | 2017-11-18 | 4.0 | 4.05 | — | 4.0 | 0.007 | 1.17 | 0.0 | 0.06 | 10.85 | 0.01 | 2.245 | 8.51 | 0.97 | 12.1 | 87.9 | 0.0 | -4.34 | 0.59 | 0.59 | — | 4.0 | 0.004 | 0.95 | 0.0 | 0.05 | 16.76 | 0.00 | 2.120 | 17.02 | 0.97 | 9.8 | 90.2 | 0.0 | -1.02 | 1.59 | 0.76 | 0.78 | — | 19048 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J8A | 6124 | 2023-02-21 | 2014-10-08 | 3.7 | 3.90 | — | 3.8 | 0.006 | 1.27 | 0.0 | 0.05 | 14.88 | 0.01 | 2.145 | 19.64 | 6.28 | 11.2 | 87.4 | 1.4 | -5.31 | 0.73 | 0.80 | 2.48 | 3.8 | 0.003 | 0.84 | 0.0 | 0.05 | 16.36 | 0.00 | 1.960 | 13.80 | 0.71 | 5.1 | 94.0 | 0.8 | -2.15 | 0.52 | 0.72 | 0.82 | 1.56 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✘ | 6Hio | 0226 | 2023-02-21 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |