Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QX3	4661	2023-08-16	2019-03-07	3.79	3.94	—	3.9	0.007	0.77	0.0	0.04	14.67	0.00	2.050	4.45	0.00	9.7	90.3	0.0	-5.16	0.74	0.79	2.40	3.8	0.004	0.62	0.0	0.04	16.40	0.00	1.988	9.64	0.17	10.1	89.9	0.0	-2.38	0.72	0.76	0.80	2.53	21587	1337	6	14	0	0	10646	logfile
✔	5LD2	4038	2023-08-18	2016-06-23	3.83	4.18	—	3.9	0.010	1.05	2.0	0.05	13.02	0.01	1.975	17.88	0.25	5.7	94.0	0.2	-3.86	0.88	0.87	2.00	3.9	0.004	0.69	0.0	0.04	15.83	0.00	1.912	12.94	0.12	4.6	95.3	0.1	0.46	0.76	0.87	0.86	1.72	23981	2857	5	51	22	0	0	logfile
✔	6XPD	22285	2023-08-09	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.57	0.00	1.952	11.43	0.78	5.4	94.6	0.0	1.02	1.38	0.60	0.83	2.03	4622	606	4	0	4	0	0	logfile
✘	6Q6i	4468	2023-08-10	2018-12-11	3.7	3.77	—	3.8	0.009	1.22	0.0	0.06	17.03	0.01	2.244	8.63	1.89	16.7	83.0	0.3	-5.81	0.70	0.74	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57200	7490	10	0	10	0	0	logfile
✔	7PF1	13364	2023-08-25	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.25	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.004	0.61	0.0	0.04	17.28	0.00	1.913	10.65	0.00	2.3	97.7	0.0	4.72	1.38	0.78	0.83	6.97	41646	4176	72	0	263	7207	0	logfile
✔	6DBV	7851	2023-08-16	2018-05-03	4.29	4.43	—	4.3	0.006	0.85	0.0	0.05	22.47	0.01	1.293	23.11	0.06	10.8	89.1	0.2	-4.29	0.81	0.78	—	4.3	0.003	0.74	0.0	0.04	21.45	0.00	1.880	17.83	0.06	6.4	93.5	0.1	-1.23	0.94	0.83	0.82	—	19958	1939	10	222	6	0	0	logfile
✘	6X68	22073	2023-08-11	2020-05-27	3.66	3.88	—	3.8	0.012	1.74	10.0	0.09	20.68	0.01	1.652	4.17	0.57	2.5	97.2	0.3	-0.38	0.72	0.77	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10246	956	7	124	8	0	0	logfile
✘	6R93	4767	2023-08-17	2019-04-02	4.0	4.29	—	4.1	0.010	1.48	2.0	0.10	28.72	0.01	1.600	2.04	0.00	2.5	97.0	0.5	0.30	0.78	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22961	775	10	290	0	0	10123	logfile
✔	7K1V	22630	2023-08-09	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	6SZS	10353	2023-08-30	2019-10-02	3.06	3.27	—	3.2	0.008	0.93	1.0	0.05	15.95	0.01	2.211	4.87	0.56	7.5	92.5	0.1	-3.63	0.88	0.85	2.68	3.2	0.006	0.67	1.0	0.04	16.16	0.00	2.028	12.17	0.73	7.9	92.0	0.1	-1.15	0.32	0.89	0.87	2.21	147361	6100	56	4646	0	0	0	logfile
✔	5FN4	3239	2023-08-11	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	7PBW	13307	2023-08-11	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	6X67	22072	2023-08-12	2020-05-27	3.47	3.79	—	3.7	0.015	1.84	8.0	0.10	21.15	0.01	2.028	8.90	0.23	4.6	94.5	0.8	-0.81	0.74	0.82	2.49	3.7	0.004	0.75	0.0	0.04	22.63	0.00	2.183	10.01	0.57	6.0	93.9	0.1	-0.05	0.81	0.69	0.83	1.81	10984	956	10	160	8	0	0	logfile
✔	7PM4	13520	2023-08-13	2021-09-01	2.49	2.26	—	2.5	0.003	0.55	0.0	0.04	16.98	0.00	2.237	4.75	1.06	4.9	95.1	0.0	0.76	0.79	0.88	5.85	2.5	0.003	0.53	0.0	0.04	16.71	0.00	2.255	3.88	1.33	5.4	94.6	0.0	0.82	0.12	0.80	0.90	5.93	14288	1724	12	0	8	60	0	logfile
✔	7RZ9	24755	2023-08-19	2021-08-27	4.15	3.58	—	4.1	0.007	0.98	0.0	0.05	10.41	0.01	2.264	3.46	0.26	5.6	94.4	0.0	-5.15	0.68	0.80	—	4.1	0.003	0.60	0.0	0.04	13.04	0.00	2.174	8.74	0.00	3.5	96.5	0.0	0.04	1.16	0.69	0.78	—	27934	3550	4	0	0	0	0	logfile
✔	7ADB	11722	2023-08-27	2020-09-14	4.4	7.85	—	4.4	0.003	0.65	0.0	0.04	15.59	0.00	2.026	14.90	4.90	5.3	94.7	0.0	-3.41	0.89	0.69	—	4.4	0.003	0.66	0.0	0.04	14.45	0.00	1.880	21.40	0.02	4.5	95.5	0.0	-0.71	2.54	0.95	0.87	—	51330	6331	26	75	18	15	0	logfile
✔	5ZET	6922	2023-08-24	2018-02-28	3.2	3.44	—	3.4	0.012	1.22	3.0	0.06	16.75	0.01	1.189	18.16	3.90	7.9	90.7	1.4	-3.69	0.68	0.74	2.06	3.4	0.006	0.82	0.0	0.04	17.09	0.01	1.913	13.76	1.46	9.8	89.8	0.3	-2.31	1.98	0.69	0.80	2.08	97374	3689	34	3219	0	0	0	logfile
✔	7X2C	32964	2023-08-12	2022-02-25	3.2	3.88	—	3.8	0.006	0.71	0.0	0.05	13.60	0.00	2.102	9.59	0.48	2.0	98.0	0.0	0.97	0.58	0.72	1.80	3.8	0.003	0.58	0.0	0.04	15.52	0.00	2.106	10.23	0.48	2.0	98.0	0.0	0.97	0.37	0.56	0.70	1.04	7953	1031	6	0	3	0	0	logfile
✔	7SNi	25227	2023-08-14	2021-10-28	2.5	2.71	—	2.8	0.006	0.74	0.0	0.05	15.97	0.00	2.239	8.51	0.06	2.1	97.9	0.0	-0.02	0.71	0.80	3.21	2.8	0.003	0.57	0.0	0.04	17.35	0.00	2.081	11.74	1.64	2.3	97.7	0.0	-0.14	0.37	0.68	0.81	3.33	16533	1952	12	0	12	233	0	logfile
✔	4V91	2599	2023-08-16	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile

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