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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8iX2 | 35787 | 2024-03-11 | 2023-03-31 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✔ | 7R2K | 14245 | 2024-03-24 | 2022-02-04 | 3.3 | 4.20 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 15.11 | 0.00 | 2.077 | 14.03 | 0.04 | 7.4 | 92.3 | 0.3 | -1.09 | 0.82 | 0.76 | 1.31 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 16.75 | 0.00 | 2.095 | 15.73 | 2.35 | 8.6 | 91.2 | 0.2 | -0.99 | 0.54 | 0.82 | 0.77 | 1.23 | 43931 | 5459 | 25 | 70 | 2 | 0 | 0 | logfile |
✘ | 8iPD | 35639 | 2024-03-26 | 2023-03-14 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149878 | 8564 | 53 | 3756 | 2 | 0 | 0 | logfile |
✔ | 8TKG | 41350 | 2024-03-23 | 2023-07-25 | 2.5 | 2.23 | — | 2.6 | 0.002 | 0.49 | 0.0 | 0.04 | 17.40 | 0.00 | 0.701 | 5.96 | 0.24 | 2.0 | 98.0 | 0.0 | 2.96 | 0.74 | 0.79 | 2.06 | 2.6 | 0.004 | 0.55 | 1.0 | 0.04 | 16.74 | 0.00 | 1.490 | 7.32 | 1.14 | 2.5 | 97.5 | 0.0 | 2.62 | 0.52 | 0.74 | 0.83 | 2.98 | 145336 | 8840 | 12 | 0 | 44 | 640 | 71936 | logfile |
✔ | 8TCo | 41156 | 2024-03-16 | 2023-07-02 | 2.8 | 2.31 | — | 2.1 | 0.003 | 0.64 | 0.0 | 0.05 | 14.09 | 0.01 | 2.138 | 8.05 | 0.00 | 3.5 | 96.5 | 0.0 | -0.22 | 0.76 | 0.75 | 3.03 | 2.1 | 0.004 | 0.67 | 0.0 | 0.05 | 15.61 | 0.00 | 2.115 | 11.68 | 2.21 | 4.2 | 95.8 | 0.0 | -0.11 | 1.02 | 0.77 | 0.77 | 2.75 | 13222 | 1633 | 12 | 0 | 15 | 0 | 0 | logfile |
✘ | 8SGo | 40462 | 2024-03-22 | 2023-04-12 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34702 | 2121 | 19 | 0 | 33 | 0 | 16960 | logfile |
✘ | 8HKV | 34861 | 2024-03-21 | 2022-11-28 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8iWX | 35782 | 2024-03-11 | 2023-03-31 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✔ | 8Jii | 36312 | 2024-03-14 | 2023-05-26 | 3.17 | 2.37 | — | 3.4 | 0.006 | 0.84 | 0.0 | 0.05 | 14.12 | 0.00 | 1.963 | 7.59 | 0.10 | 4.6 | 95.4 | 0.0 | -1.97 | 0.74 | 0.78 | 3.14 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.60 | 0.00 | 2.167 | 5.87 | 1.72 | 4.2 | 95.8 | 0.0 | -0.97 | 0.30 | 0.76 | 0.82 | 2.56 | 9083 | 1144 | 6 | 0 | 3 | 1 | 0 | logfile |
✔ | 7X3X | 32996 | 2024-03-15 | 2022-03-01 | 3.2 | 3.69 | — | 3.2 | 0.012 | 0.98 | 0.0 | 0.06 | 27.92 | 0.01 | 1.947 | 10.45 | 0.16 | 0.9 | 99.1 | 0.0 | 2.89 | 0.81 | 0.65 | 2.39 | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 27.62 | 0.00 | 2.249 | 6.89 | 0.96 | 1.3 | 98.7 | 0.0 | 3.37 | 1.73 | 0.89 | 0.87 | 1.89 | 12036 | 769 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 8ooi | 17016 | 2024-03-23 | 2023-04-05 | 2.61 | 2.14 | — | 1.7 | 0.005 | 0.70 | 0.0 | 0.05 | 15.39 | 0.00 | 1.501 | 10.42 | 0.16 | 4.5 | 95.1 | 0.4 | -0.61 | 0.83 | 0.80 | 3.03 | 1.6 | 0.003 | 0.65 | 0.0 | 0.04 | 16.82 | 0.00 | 2.048 | 10.90 | 2.21 | 6.0 | 93.7 | 0.3 | -0.10 | 0.92 | 0.84 | 0.83 | 2.88 | 35256 | 4404 | 18 | 0 | 36 | 144 | 0 | logfile |
✘ | 8iX0 | 35785 | 2024-03-11 | 2023-03-31 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✔ | 8TJ3 | 41299 | 2024-03-15 | 2023-07-20 | 3.2 | 3.62 | — | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 13.85 | 0.02 | 2.416 | 10.13 | 1.16 | 7.4 | 92.4 | 0.1 | 0.15 | 0.73 | 0.58 | 0.54 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.45 | 0.00 | 1.972 | 16.38 | 0.72 | 7.6 | 92.4 | 0.0 | 0.56 | 1.87 | 0.79 | 0.76 | 1.68 | 13127 | 833 | 2 | 0 | 0 | 0 | 6652 | logfile |
✘ | 8FLK | 29281 | 2024-03-18 | 2022-12-21 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 1276 | 6 | 0 | 4 | 0 | 10124 | logfile |
✔ | 8SZH | 40916 | 2024-03-17 | 2023-05-29 | 3.1 | 2.21 | — | 1.8 | 0.006 | 0.78 | 2.0 | 0.11 | 14.62 | 0.01 | 2.196 | 4.04 | 0.00 | 3.8 | 96.2 | 0.0 | -0.33 | 0.82 | 0.82 | 2.95 | 1.8 | 0.004 | 0.56 | 0.0 | 0.04 | 15.70 | 0.00 | 2.193 | 3.73 | 1.71 | 4.1 | 95.9 | 0.0 | -0.16 | 0.93 | 0.83 | 0.84 | 2.78 | 18062 | 2267 | 10 | 0 | 24 | 1 | 0 | logfile |
✔ | 8G38 | 29689 | 2024-03-21 | 2023-02-07 | 3.2 | 2.14 | — | 2.9 | 0.009 | 1.10 | 9.0 | 0.07 | 25.06 | 0.01 | 0.842 | 5.44 | 4.67 | 3.4 | 96.5 | 0.1 | -1.04 | 0.72 | 0.71 | 1.68 | 2.1 | 0.007 | 0.67 | 0.0 | 0.04 | 23.88 | 0.01 | 2.042 | 13.21 | 5.27 | 6.2 | 93.8 | 0.1 | -0.71 | 0.37 | 0.73 | 0.74 | 1.95 | 144290 | 5922 | 53 | 4559 | 1 | 1 | 0 | logfile |
✔ | 7Q2Y | 13784 | 2024-03-17 | 2021-10-26 | 3.0 | 2.21 | — | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.40 | 0.01 | 2.047 | 8.57 | 0.42 | 3.6 | 96.3 | 0.0 | 2.39 | 0.74 | 0.73 | 1.65 | 2.0 | 0.005 | 0.83 | 1.0 | 0.04 | 19.76 | 0.00 | 1.842 | 11.09 | 2.92 | 3.9 | 96.1 | 0.0 | 1.81 | 0.59 | 0.77 | 0.79 | 1.90 | 17754 | 2076 | 8 | 56 | 6 | 0 | 0 | logfile |
✘ | 8P98 | 17575 | 2024-03-11 | 2023-06-05 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7830 | 956 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7UZi | 26912 | 2024-03-15 | 2022-05-09 | 3.9 | 4.08 | — | 4.0 | 0.012 | 1.65 | 3.0 | 0.08 | 12.35 | 0.02 | 2.492 | 0.18 | 0.18 | 3.8 | 96.1 | 0.1 | -0.65 | 0.70 | 0.77 | 1.27 | 4.0 | 0.004 | 0.90 | 0.0 | 0.05 | 16.48 | 0.01 | 2.065 | 22.68 | 3.21 | 3.6 | 96.4 | 0.0 | -0.37 | 2.87 | 0.72 | 0.79 | 0.92 | 71172 | 9083 | 37 | 0 | 1 | 0 | 0 | logfile |
✔ | 8SQ9 | 40699 | 2024-03-19 | 2023-05-04 | 2.9 | 3.13 | — | 3.1 | 0.007 | 0.55 | 0.0 | 0.04 | 15.02 | 0.00 | 1.877 | 4.53 | 2.38 | 4.7 | 95.2 | 0.1 | 0.07 | 0.57 | 0.72 | 3.98 | 3.1 | 0.003 | 0.47 | 0.0 | 0.04 | 16.33 | 0.00 | 1.920 | 4.45 | 2.14 | 4.3 | 95.7 | 0.1 | 0.44 | 0.31 | 0.65 | 0.79 | 3.47 | 25412 | 1469 | 13 | 67 | 8 | 242 | 12087 | logfile |