Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F7X	28912	2023-04-21	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.003	0.61	0.0	0.04	14.55	0.00	2.042	6.42	0.62	2.0	98.0	0.0	1.46	1.10	0.62	0.85	2.47	8902	1145	6	0	0	0	0	logfile
✔	8Hii	34817	2023-04-20	2022-11-20	3.57	2.49	3.54	3.0	0.004	0.80	0.0	0.05	9.45	0.01	2.260	3.48	0.00	5.4	94.6	0.0	-3.43	0.72	0.70	2.19	3.3	0.003	0.69	0.0	0.04	14.41	0.00	2.106	11.66	0.34	4.3	95.7	0.0	0.29	1.65	0.73	0.72	1.61	8212	1055	4	0	0	0	0	logfile
✔	8F77	28897	2023-04-27	2022-11-18	3.15	3.43	3.19	3.4	0.005	0.75	0.0	0.04	16.17	0.01	2.206	8.39	0.28	3.8	96.2	0.0	-0.68	0.63	0.74	1.49	3.4	0.004	0.64	0.0	0.04	16.65	0.00	2.000	14.03	0.24	3.7	96.3	0.0	-0.09	0.81	0.66	0.82	1.53	25678	3072	18	0	15	6	0	logfile
✔	8F7E	28904	2023-04-20	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	4.1	0.004	0.84	0.0	0.05	13.94	0.01	2.044	25.40	0.00	8.3	91.7	0.0	-2.73	2.07	0.59	0.62	—	6642	814	2	0	0	0	0	logfile
✔	8F76	28896	2023-04-20	2022-11-18	3.1	3.33	3.05	3.3	0.005	0.85	0.0	0.05	14.68	0.01	2.245	6.25	0.00	3.2	96.8	0.0	-1.19	0.68	0.83	3.50	3.4	0.003	0.53	0.0	0.04	16.08	0.00	2.125	9.37	0.34	2.7	97.3	0.0	0.58	0.39	0.66	0.86	3.03	8170	1038	6	0	1	0	0	logfile
✔	8F7B	28901	2023-04-23	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	17.29	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.002	0.48	0.0	0.04	16.28	0.00	2.227	7.36	0.34	2.1	97.9	0.0	2.15	1.13	0.59	0.79	2.11	16166	1894	18	0	17	6	0	logfile
✔	8F75	28895	2023-04-21	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.003	0.85	0.0	0.05	17.11	0.00	2.199	23.81	0.18	6.4	93.6	0.0	-2.49	2.65	0.72	0.72	—	9899	1218	3	0	0	0	0	logfile
✔	8F74	28894	2023-04-23	2022-11-18	3.1	3.55	3.19	3.5	0.005	0.72	0.0	0.04	16.78	0.00	2.206	5.81	0.06	2.6	97.4	0.0	0.91	0.63	0.80	1.72	3.5	0.003	0.51	0.0	0.04	16.27	0.00	2.212	8.13	0.29	2.6	97.4	0.0	1.88	1.14	0.65	0.82	1.37	16008	1881	18	0	15	6	0	logfile
✘	8F7D	28903	2023-04-20	2022-11-18	4.2	4.28	4.25	4.2	0.005	1.00	0.0	0.05	15.55	0.01	2.264	19.74	0.53	6.7	93.3	0.0	-2.71	0.60	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6578	811	2	0	0	0	0	logfile
✔	8F7J	28905	2023-04-20	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	8HHY	34807	2023-04-28	2022-11-17	2.77	2.97	2.80	2.9	0.004	0.69	0.0	0.05	13.81	0.00	2.074	14.92	0.00	5.6	94.3	0.1	-1.92	0.55	0.54	1.90	2.9	0.003	0.64	0.0	0.04	16.08	0.00	2.079	14.07	2.11	4.7	95.3	0.0	-1.60	0.41	0.60	0.61	1.59	27420	3483	16	0	32	0	0	logfile
✔	8HHX	34806	2023-04-28	2022-11-17	3.62	3.70	3.71	3.6	0.004	0.64	0.0	0.05	13.16	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	3.6	0.003	0.70	0.0	0.05	15.54	0.00	2.050	15.02	0.27	7.2	92.8	0.0	-1.84	0.49	0.46	0.61	0.93	27435	3477	17	0	35	0	0	logfile
✘	8F6C	28879	2023-04-25	2022-11-16	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19344	2396	12	0	12	0	0	logfile
✔	8F6E	28881	2023-04-21	2022-11-16	3.8	4.02	3.70	4.0	0.003	0.55	0.0	0.04	13.52	0.00	2.060	5.75	0.00	5.4	94.2	0.4	-0.77	0.72	0.75	2.20	4.0	0.004	0.79	0.0	0.04	15.85	0.00	2.051	11.78	0.44	6.6	92.9	0.4	-1.37	1.20	0.71	0.72	2.30	10478	1366	8	0	8	0	0	logfile
✔	8F6i	28884	2023-04-21	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.005	0.67	0.0	0.04	14.02	0.00	1.940	12.72	0.18	6.7	93.3	0.1	0.05	0.43	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✘	8F68	28877	2023-04-21	2022-11-16	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9666	1198	6	0	6	0	0	logfile
✔	8F6H	28883	2023-04-25	2022-11-16	3.9	4.17	3.97	4.1	0.002	0.47	0.0	0.04	13.60	0.00	1.887	6.02	0.00	5.9	94.0	0.2	-0.05	0.72	0.79	2.38	4.1	0.003	0.54	0.0	0.04	15.26	0.00	1.817	9.05	0.18	6.5	93.2	0.2	0.26	0.49	0.72	0.79	2.22	20768	1358	8	0	6	0	10347	logfile
✔	8HHo	34805	2023-04-20	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	14.81	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.2	0.003	0.61	0.0	0.04	16.30	0.00	2.139	14.64	0.30	2.2	97.8	0.0	1.41	0.39	0.47	0.80	1.96	3274	416	1	0	1	0	0	logfile
✔	8F6F	28882	2023-04-21	2022-11-16	3.6	3.88	3.63	3.9	0.003	0.52	0.0	0.04	13.45	0.00	2.011	6.45	0.09	4.6	95.3	0.2	-0.37	0.75	0.82	2.79	3.9	0.004	0.68	0.0	0.04	15.48	0.00	1.906	8.64	0.62	6.1	93.8	0.2	-0.05	1.18	0.72	0.81	2.52	10344	1344	8	0	6	0	0	logfile
✔	8F6J	28885	2023-04-21	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.61	0.0	0.04	16.27	0.00	2.066	10.49	0.17	5.4	94.3	0.3	-0.51	0.49	0.72	0.78	1.74	10472	1366	8	0	8	0	0	logfile

• ← previous
• Page 5 of 372
• next →