Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E4P	27895	2022-12-22	2022-08-18	3.59	4.02	3.50	3.9	0.004	0.75	0.0	0.05	13.14	0.00	2.242	7.79	0.00	3.0	97.0	0.0	2.88	0.65	0.74	1.40	3.8	0.002	0.46	0.0	0.03	13.75	0.00	2.187	7.67	0.04	2.9	97.1	0.0	2.68	0.43	0.66	0.76	1.49	51336	3596	8	0	12	0	24392	logfile
✔	7ZX7	15006	2022-12-22	2022-05-20	3.4	4.37	3.42	3.0	0.004	0.52	0.0	0.04	16.95	0.00	1.385	9.53	0.00	3.0	97.0	0.0	1.17	0.88	0.76	0.98	3.0	0.004	0.70	0.0	0.04	17.92	0.00	1.953	17.48	0.18	4.0	96.0	0.0	0.76	1.40	0.91	0.84	1.43	49277	5789	32	132	12	0	0	logfile
✔	7XC2	33112	2022-12-22	2022-03-22	3.0	3.52	—	2.8	0.007	0.83	0.0	0.05	12.70	0.00	2.093	8.55	1.80	7.3	92.7	0.0	-2.27	0.80	0.71	2.27	2.8	0.005	0.61	0.0	0.04	14.41	0.00	2.185	6.56	1.53	5.9	94.1	0.0	0.30	2.00	0.93	0.90	1.88	52070	6445	15	0	5	0	0	logfile
✔	7TAW	25788	2022-12-22	2021-12-21	2.7	3.38	—	3.2	0.003	0.67	0.0	0.04	14.86	0.01	2.234	7.43	0.06	4.5	95.5	0.0	-1.53	0.80	0.76	2.53	3.2	0.003	0.65	0.0	0.04	16.73	0.00	2.146	12.80	1.42	5.4	94.6	0.0	-0.14	1.26	0.78	0.82	2.20	51399	6242	24	160	0	0	0	logfile
✔	7ZYJ	15025	2022-12-22	2022-05-24	2.7	3.45	2.80	3.0	0.004	0.57	0.0	0.09	13.32	0.00	2.158	7.18	0.06	3.0	97.0	0.0	0.56	0.89	0.85	4.15	3.0	0.005	0.60	0.0	0.04	15.22	0.00	2.180	7.68	0.99	3.4	96.6	0.0	1.20	0.45	0.89	0.93	3.49	49234	6362	30	0	2	0	0	logfile
✔	7ZWD	14997	2022-12-22	2022-05-19	3.0	3.30	3.03	3.0	0.005	0.62	0.0	0.04	17.09	0.00	1.559	7.62	0.02	3.3	96.7	0.0	0.25	0.83	0.79	2.29	3.0	0.004	0.77	0.0	0.04	18.52	0.00	2.110	15.13	1.72	3.8	96.2	0.0	0.41	1.40	0.85	0.84	2.14	49279	5789	32	132	12	0	0	logfile
✔	7Q59	13829	2022-12-22	2021-11-03	4.36	4.89	—	4.4	0.003	0.63	0.0	0.04	10.22	0.00	1.925	6.10	0.72	3.6	96.4	0.0	-0.17	0.79	0.65	—	4.4	0.004	0.70	0.0	0.04	11.92	0.00	2.004	17.19	0.00	4.7	95.3	0.0	-0.35	1.45	0.90	0.84	—	47632	6118	14	0	6	0	0	logfile
✔	7T3K	25661	2022-12-22	2021-12-08	3.5	4.08	—	3.5	0.004	0.75	0.0	0.05	16.23	0.01	2.223	7.25	0.52	5.0	95.0	0.0	-1.93	0.80	0.64	0.97	3.6	0.003	0.70	0.0	0.04	16.66	0.00	2.038	18.04	0.37	5.5	94.5	0.0	-0.03	1.43	0.90	0.81	1.21	50620	6242	22	122	0	0	0	logfile
✔	8E4M	27892	2022-12-22	2022-08-18	3.44	3.74	3.39	3.6	0.003	0.45	0.0	0.03	10.68	0.00	2.248	6.37	0.00	1.9	98.1	0.0	3.12	0.66	0.74	1.61	3.6	0.003	0.52	0.0	0.03	13.68	0.00	2.109	7.92	0.09	2.8	97.2	0.0	2.47	0.87	0.67	0.76	1.84	49595	3524	8	0	12	0	23500	logfile
✔	7XU3	33457	2022-12-22	2022-05-18	3.0	3.49	2.94	3.3	0.008	0.86	0.0	0.05	13.76	0.01	1.978	3.88	0.34	3.9	96.1	0.0	-1.43	0.82	0.82	2.61	3.2	0.003	0.54	0.0	0.04	14.53	0.00	1.940	7.36	0.61	3.7	96.3	0.0	-0.69	1.12	0.83	0.84	2.51	47057	3006	15	0	48	0	22838	logfile
✔	7U65	26360	2022-12-22	2022-03-03	2.8	2.10	2.73	1.9	0.005	0.65	0.0	0.05	12.92	0.01	2.297	2.74	0.46	3.6	96.4	0.0	1.18	0.78	0.77	3.50	1.9	0.003	0.53	0.0	0.04	15.50	0.00	2.154	3.71	0.96	2.8	97.2	0.0	2.45	0.44	0.81	0.81	2.96	26616	3384	12	0	0	0	0	logfile
✔	7T3L	25662	2022-12-22	2021-12-08	3.6	8.29	—	3.5	0.004	0.74	0.0	0.05	17.15	0.01	2.223	7.77	0.52	5.0	95.0	0.0	-1.92	0.73	0.45	-0.03	3.4	0.002	0.60	0.0	0.04	17.41	0.00	2.115	19.01	0.08	5.3	94.7	0.0	0.42	1.17	0.94	0.84	-0.02	52219	6242	28	200	0	0	0	logfile
✔	7WTL	32790	2022-12-22	2022-02-05	3.3	3.22	—	3.1	0.003	0.80	0.0	0.04	15.89	0.01	2.096	6.28	0.04	6.2	93.7	0.1	-1.81	0.79	0.76	2.24	3.1	0.005	0.68	0.0	0.04	16.49	0.01	2.007	10.78	0.63	7.0	92.9	0.1	-0.91	0.34	0.81	0.81	2.05	49811	3298	21	1102	3	0	0	logfile
✔	7WTQ	32795	2022-12-22	2022-02-05	3.7	3.57	—	3.4	0.005	0.90	0.0	0.05	16.33	0.01	2.146	7.01	0.04	8.0	91.8	0.1	-1.90	0.82	0.79	1.74	3.4	0.009	0.91	0.0	0.05	17.46	0.01	1.965	20.26	0.61	10.4	89.5	0.1	-1.65	1.16	0.83	0.80	1.17	51309	3079	19	1255	1	0	0	logfile
✔	7U66	26361	2022-12-22	2022-03-03	3.1	2.19	3.03	2.0	0.009	0.80	0.0	0.05	14.35	0.00	2.105	2.93	0.92	3.5	96.3	0.2	-0.05	0.78	0.78	3.54	2.0	0.002	0.49	0.0	0.04	15.76	0.00	2.147	3.22	0.23	1.9	98.1	0.0	1.20	1.01	0.79	0.80	2.91	26664	3348	24	0	12	0	0	logfile
✔	7U67	26362	2022-12-22	2022-03-03	2.5	2.10	2.53	1.8	0.005	0.75	0.0	0.05	17.77	0.00	2.161	3.35	0.91	2.4	97.6	0.0	-0.22	0.79	0.79	3.83	1.8	0.004	0.58	0.0	0.04	17.82	0.00	2.014	4.39	1.64	3.1	96.9	0.0	0.87	0.40	0.83	0.83	3.39	26778	3360	18	0	12	0	0	logfile
✔	7XU6	33460	2022-12-22	2022-05-18	2.9	3.40	2.92	3.2	0.012	0.91	0.0	0.05	13.67	0.01	2.069	3.38	0.74	6.7	93.3	0.0	-1.74	0.80	0.78	2.99	3.2	0.004	0.57	0.0	0.04	14.55	0.00	1.914	8.94	0.88	5.8	94.2	0.0	-0.97	0.46	0.82	0.81	3.02	51464	3267	18	0	66	0	24902	logfile
✘	7Z5J	14522	2022-12-22	2022-03-09	2.58	3.23	2.56	3.1	0.022	1.37	14.0	0.08	12.35	0.01	1.486	7.21	1.03	4.3	95.4	0.2	-3.15	0.81	0.80	5.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25576	3234	24	0	54	0	0	logfile
✔	7XE0	33153	2022-12-22	2022-03-29	3.33	3.98	—	3.5	0.004	0.68	0.0	0.05	12.83	0.01	2.201	15.44	0.41	8.4	91.6	0.0	-1.40	0.79	0.76	0.57	3.5	0.003	0.69	0.0	0.04	14.86	0.00	2.136	14.86	0.38	8.1	91.9	0.0	-1.08	0.41	0.80	0.79	0.56	49715	6160	15	0	5	0	0	logfile
✔	8DEW	27401	2022-12-22	2022-06-21	2.89	3.11	2.93	3.1	0.005	0.85	1.0	0.04	14.63	0.00	2.160	6.02	0.16	3.2	96.8	0.0	1.58	0.74	0.84	2.90	3.1	0.004	0.53	0.0	0.04	16.22	0.00	2.129	4.33	0.75	3.4	96.6	0.0	1.43	0.58	0.72	0.86	2.74	48792	3172	7	0	23	0	24295	logfile

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