Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VW0	21409	2023-04-29	2020-02-18	3.59	4.20	—	3.9	0.010	0.95	0.0	0.06	20.29	0.01	2.126	8.10	6.78	7.9	92.0	0.1	-3.75	0.88	0.86	1.62	3.9	0.003	0.66	0.0	0.04	19.93	0.00	2.049	12.65	0.21	5.9	94.0	0.0	-0.09	0.61	0.87	0.84	1.22	29944	3516	11	130	3	0	0	logfile
✔	7KiP	22889	2023-04-29	2020-10-24	3.39	4.00	3.47	3.9	0.010	1.07	0.0	0.07	8.78	0.01	2.290	1.86	0.00	7.9	92.1	0.1	-4.05	0.83	0.84	3.42	3.9	0.005	0.68	0.0	0.05	11.69	0.00	2.174	4.41	0.16	8.9	91.1	0.0	-1.59	0.57	0.84	0.87	2.64	30612	3576	69	0	222	0	0	logfile
✔	6oMF	20090	2023-04-29	2019-04-18	3.26	3.79	—	3.7	0.012	1.03	1.0	0.06	19.51	0.01	1.800	9.63	12.34	7.2	92.6	0.2	-4.28	0.70	0.72	1.43	3.7	0.006	0.73	0.0	0.05	19.09	0.00	2.022	13.15	0.39	7.2	92.8	0.0	-1.39	0.61	0.72	0.75	1.11	30251	3616	10	92	3	0	0	logfile
✔	7MKi	23895	2023-04-29	2021-04-23	3.5	3.43	3.54	3.5	0.008	0.76	0.0	0.05	16.91	0.00	2.170	6.42	5.35	7.1	92.8	0.0	-1.84	0.68	0.80	2.21	3.5	0.002	0.54	0.0	0.04	17.58	0.00	2.155	7.02	0.19	5.1	94.9	0.0	-0.22	0.35	0.71	0.80	1.59	30919	3676	10	96	6	0	0	logfile
✔	7T2R	25633	2023-04-29	2021-12-06	3.2	2.31	—	2.1	0.010	1.52	6.0	0.12	15.94	0.01	1.915	10.04	5.23	10.3	89.7	0.0	-4.57	0.76	0.76	2.17	2.1	0.004	0.82	0.0	0.05	17.23	0.01	2.062	18.35	1.05	9.8	90.2	0.0	-2.07	0.55	0.77	0.79	1.81	29216	3736	20	0	22	0	0	logfile
✘	7MKE	23893	2023-04-29	2021-04-23	3.7	4.27	3.78	4.0	0.009	0.86	0.0	0.05	17.32	0.01	2.077	8.96	7.42	8.8	91.1	0.1	-2.11	0.88	0.86	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30641	3675	11	81	7	0	0	logfile
✔	7WRF	32725	2023-04-29	2022-01-26	3.04	3.32	—	3.3	0.008	0.99	0.0	0.06	10.46	0.01	2.294	4.47	0.12	6.2	93.8	0.0	-3.74	0.71	0.81	3.17	3.3	0.005	0.69	0.0	0.04	15.25	0.00	2.101	10.67	0.42	5.7	94.3	0.0	0.46	0.83	0.72	0.84	2.51	30469	3720	8	0	9	0	0	logfile
✔	6VE2	21152	2023-04-29	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.004	0.94	0.0	0.05	7.57	0.00	2.114	14.88	0.00	13.8	86.1	0.1	-3.72	1.19	0.82	0.75	—	30198	6153	21	0	0	0	0	logfile
✘	6VVZ	21408	2023-04-29	2020-02-18	3.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29860	3508	12	127	4	0	0	logfile
✔	6EEC	9041	2023-04-29	2018-08-13	3.55	3.91	—	3.8	0.011	1.02	2.0	0.05	15.64	0.01	1.828	36.23	0.55	11.6	88.1	0.3	-3.74	0.81	0.85	2.78	3.8	0.003	0.65	0.0	0.04	17.82	0.00	2.015	12.12	0.21	5.6	94.4	0.0	-0.49	0.69	0.81	0.85	1.99	29896	3508	12	128	4	0	0	logfile
✔	7WRA	32720	2023-04-29	2022-01-26	2.98	3.19	—	3.3	0.006	0.99	0.0	0.05	10.56	0.01	2.231	6.76	0.60	6.0	94.0	0.0	-3.96	0.69	0.78	2.10	3.1	0.005	0.75	0.0	0.04	15.65	0.01	2.135	14.42	2.10	6.5	93.5	0.0	-0.55	0.87	0.70	0.81	1.63	30373	3720	5	0	1	0	0	logfile
✔	7WRC	32722	2023-04-29	2022-01-26	3.21	3.55	—	3.4	0.010	1.07	0.0	0.06	10.59	0.01	2.235	5.92	0.12	7.0	93.0	0.0	-3.90	0.71	0.77	2.04	3.4	0.005	0.70	0.0	0.04	14.64	0.00	2.159	12.36	0.45	5.4	94.6	0.0	0.46	1.73	0.74	0.83	1.86	30468	3720	8	0	8	0	0	logfile
✔	7WRE	32724	2023-04-29	2022-01-26	2.52	3.32	—	3.1	0.013	1.18	0.0	0.07	10.86	0.01	2.212	6.94	0.24	6.2	93.5	0.3	-3.69	0.75	0.82	2.89	3.1	0.008	0.82	0.0	0.05	15.33	0.01	2.117	12.69	3.00	6.8	93.2	0.0	0.29	0.86	0.73	0.84	2.13	30468	3720	8	0	8	0	0	logfile
✔	7MDi	23773	2023-04-29	2021-04-05	4.3	4.42	—	4.3	0.006	0.75	0.0	0.04	13.13	0.00	2.089	11.76	0.17	10.8	89.2	0.1	-4.24	0.78	0.81	—	4.3	0.002	0.59	0.0	0.04	13.04	0.00	1.965	8.19	0.00	9.3	90.7	0.0	-1.47	0.46	0.78	0.81	—	30608	4348	20	0	24	24	0	logfile
✔	7X0Y	32929	2023-04-29	2022-02-22	3.89	4.40	3.97	4.2	0.006	0.75	0.0	0.05	14.08	0.00	2.049	29.33	0.06	10.2	89.8	0.0	-4.73	0.80	0.81	1.29	4.2	0.006	0.76	0.0	0.05	15.58	0.00	2.091	14.73	0.31	9.5	90.5	0.0	-1.47	0.61	0.79	0.82	1.17	15242	1838	10	0	20	0	0	logfile
✔	7WRB	32721	2023-04-29	2022-01-26	2.88	3.16	—	3.3	0.006	1.01	0.0	0.05	10.44	0.01	2.276	6.29	0.12	6.0	93.9	0.1	-3.78	0.70	0.79	2.33	3.3	0.005	0.82	0.0	0.05	16.25	0.00	2.208	14.34	3.22	4.6	95.4	0.0	0.26	0.92	0.70	0.83	1.96	30376	3720	8	0	4	0	0	logfile
✔	7WRD	32723	2023-04-29	2022-01-26	2.98	3.14	—	3.3	0.009	1.08	0.0	0.06	10.61	0.01	2.242	5.21	0.12	5.8	94.0	0.2	-3.61	0.68	0.80	2.80	3.1	0.005	0.73	0.0	0.04	15.76	0.00	2.154	12.43	2.64	6.1	93.9	0.0	0.33	1.36	0.68	0.82	2.40	30468	3720	8	0	8	0	0	logfile
✔	8HW1	35080	2023-04-29	2022-12-28	3.13	3.07	2.93	3.2	0.028	2.49	0.0	0.29	22.01	0.03	2.137	14.51	6.74	11.3	88.7	0.0	-2.57	0.68	0.85	3.07	3.2	0.003	0.90	0.0	0.05	19.99	0.00	2.173	7.18	0.05	9.4	90.6	0.0	-0.34	0.45	0.66	0.86	3.07	29271	2651	22	0	143	0	0	logfile
✔	6N58	0349	2023-04-29	2018-11-21	3.78	3.90	—	3.9	0.013	1.21	0.0	0.06	10.64	0.01	1.892	38.60	0.37	14.7	84.9	0.4	-4.74	0.73	0.82	2.09	3.9	0.003	0.73	0.0	0.04	15.58	0.00	2.054	12.24	0.46	7.3	92.6	0.1	-1.38	3.03	0.73	0.81	1.26	30189	3833	11	0	8	0	0	logfile
✔	6SoF	10273	2023-04-29	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile

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