Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UD4	20733	2023-02-28	2019-09-18	3.3	3.63	—	3.5	0.008	0.63	0.0	0.06	13.23	0.01	2.022	6.34	0.12	5.2	94.8	0.0	-3.11	0.65	0.74	1.46	3.5	0.002	0.53	0.0	0.05	14.37	0.00	2.001	8.39	0.24	4.1	95.9	0.0	0.74	1.77	0.66	0.75	1.76	31642	2044	15	0	12	0	15470	logfile
✔	8ABL	15325	2023-02-28	2022-07-04	2.1	2.00	2.04	2.0	0.010	1.69	34.0	0.11	17.94	0.01	2.060	2.82	4.41	2.2	97.8	0.0	-0.94	0.73	0.90	6.29	2.0	0.003	0.57	0.0	0.04	17.41	0.00	2.188	4.24	1.06	1.3	98.7	0.0	2.13	1.31	0.74	0.90	5.67	31660	3878	33	0	32	0	0	logfile
✔	6U6i	20666	2023-02-28	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.47	0.0	0.04	13.04	0.00	2.092	5.94	0.09	5.0	95.0	0.0	-0.18	0.51	0.81	0.83	4.16	21701	1496	9	0	11	0	10337	logfile
✔	7WE9	32443	2023-02-28	2021-12-23	3.6	3.89	—	3.8	0.004	0.65	1.0	0.05	14.22	0.00	2.118	12.27	0.17	8.2	91.7	0.1	-2.16	0.76	0.73	1.62	3.7	0.005	0.68	0.0	0.05	15.81	0.00	2.066	13.55	0.41	9.0	90.9	0.1	-2.16	1.14	0.77	0.74	1.01	32043	3987	32	0	72	0	0	logfile
✔	7MXP	24075	2023-02-28	2021-05-19	4.46	8.21	—	4.5	0.009	1.45	7.0	0.08	14.72	0.01	2.280	7.97	0.23	8.5	91.3	0.2	-3.74	0.89	0.80	—	4.5	0.003	0.70	0.0	0.04	13.65	0.00	2.120	23.16	0.00	8.9	91.1	0.0	-2.13	1.18	0.89	0.82	—	31664	3967	19	0	61	0	0	logfile
✔	7YQY	34039	2023-02-28	2022-08-08	3.74	4.03	3.84	3.9	0.003	0.60	0.0	0.06	14.10	0.01	1.925	10.62	0.18	9.0	90.9	0.1	-2.25	0.80	0.81	1.73	3.9	0.006	0.71	0.0	0.05	15.58	0.00	2.091	13.72	0.41	11.0	88.9	0.0	-2.00	1.16	0.81	0.82	1.54	31983	3984	25	0	75	0	0	logfile
✔	7UAP	26429	2023-02-28	2022-03-13	2.8	2.98	2.85	3.0	0.007	1.25	12.0	0.07	13.61	0.01	2.041	19.84	0.29	7.1	92.4	0.6	-2.28	0.64	0.65	1.45	3.0	0.004	0.79	0.0	0.05	16.11	0.00	2.097	13.13	3.25	7.4	92.4	0.2	-1.50	1.91	0.67	0.77	1.92	31657	3957	27	0	59	0	0	logfile
✘	8DDS	27340	2023-02-28	2022-06-18	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✔	7U32	26322	2023-02-28	2022-02-25	3.46	3.64	3.45	3.6	0.002	0.51	0.0	0.04	14.68	0.00	2.170	7.66	0.00	2.5	97.5	0.0	0.75	0.56	0.48	1.42	3.5	0.003	0.58	0.0	0.04	17.78	0.00	2.090	9.90	0.27	3.2	96.7	0.1	0.48	0.98	0.72	0.72	1.35	32150	3802	32	64	14	0	0	logfile
✘	8DDU	27342	2023-02-28	2022-06-19	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✔	6MHo	9115	2023-02-28	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.55	0.0	0.03	12.70	0.00	2.003	6.04	0.14	4.5	95.5	0.0	0.98	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✔	7N8Y	24249	2023-02-28	2021-06-16	3.65	3.83	—	3.8	0.005	0.98	0.0	0.06	14.98	0.01	2.293	8.21	0.69	8.9	90.9	0.3	-5.05	0.70	0.73	1.55	3.8	0.003	0.67	0.0	0.04	16.22	0.00	1.997	11.09	0.46	9.4	90.6	0.0	-2.57	0.60	0.70	0.75	1.16	16162	2074	4	0	0	0	0	logfile
✔	6oUL	20203	2023-02-28	2019-05-04	3.4	3.56	—	3.6	0.015	1.19	0.0	0.06	14.87	0.01	2.011	34.20	0.31	12.2	87.6	0.3	-4.17	0.68	0.79	2.67	3.6	0.003	0.65	0.0	0.04	17.69	0.00	2.092	10.70	0.37	6.0	93.9	0.1	-0.55	1.97	0.68	0.83	1.24	31927	3751	12	117	6	0	0	logfile
✔	7W6T	32335	2023-02-28	2021-12-02	3.85	4.45	—	3.9	0.006	0.87	0.0	0.05	14.59	0.01	2.034	32.65	0.29	10.7	89.2	0.1	-4.74	0.64	0.67	0.30	3.9	0.004	0.79	0.0	0.04	16.11	0.00	2.058	24.84	0.40	7.6	92.4	0.0	-1.69	1.26	0.63	0.64	0.17	31768	3934	10	0	0	0	0	logfile
✘	7LX0	23563	2023-02-28	2021-03-02	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72462	6699	60	0	447	0	0	logfile
✔	6NZW	0562	2023-02-28	2019-02-14	3.21	3.76	—	3.7	0.008	0.90	0.0	0.04	13.73	0.00	2.145	3.31	3.09	3.6	96.4	0.0	-3.71	0.62	0.75	2.72	3.7	0.003	0.56	0.0	0.04	15.77	0.00	1.851	8.43	0.29	4.2	95.8	0.0	-0.41	0.87	0.60	0.76	1.78	31720	1878	12	0	19	0	15714	logfile
✔	6K43	9913	2023-02-28	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.72	0.0	0.03	18.20	0.00	2.172	5.80	0.36	3.5	96.5	0.0	4.18	0.82	0.76	0.81	1.59	31808	3840	48	0	36	0	0	logfile
✔	7MDM	23775	2023-02-28	2021-04-05	4.86	5.09	—	5.0	0.005	1.19	0.0	0.07	15.37	0.01	2.261	9.38	0.03	7.9	92.1	0.0	-3.53	0.82	0.77	—	4.9	0.004	0.87	0.0	0.05	14.45	0.01	2.097	32.97	0.00	8.9	91.1	0.0	-2.05	2.41	0.84	0.79	—	31986	4051	12	0	6	0	0	logfile
✔	7L2F	23127	2023-02-28	2020-12-16	3.9	4.52	3.98	4.1	0.007	1.13	1.0	0.08	12.21	0.02	2.265	4.49	0.47	3.1	96.9	0.0	-0.15	0.85	0.73	1.17	4.1	0.003	0.65	0.0	0.04	13.78	0.00	2.126	11.53	0.20	3.1	96.9	0.0	-0.14	1.70	0.88	0.82	1.51	32049	3970	30	0	74	0	0	logfile
✘	5Y88	6817	2023-02-28	2017-08-20	3.46	3.56	—	3.5	0.011	1.45	25.0	0.11	15.50	0.01	1.112	25.55	5.35	6.2	92.6	1.2	-2.93	0.54	0.64	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72347	9113	50	337	14	0	0	logfile

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