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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6UD4 | 20733 | 2023-02-28 | 2019-09-18 | 3.3 | 3.63 | — | 3.5 | 0.008 | 0.63 | 0.0 | 0.06 | 13.23 | 0.01 | 2.022 | 6.34 | 0.12 | 5.2 | 94.8 | 0.0 | -3.11 | 0.65 | 0.74 | 1.46 | 3.5 | 0.002 | 0.53 | 0.0 | 0.05 | 14.37 | 0.00 | 2.001 | 8.39 | 0.24 | 4.1 | 95.9 | 0.0 | 0.74 | 1.77 | 0.66 | 0.75 | 1.76 | 31642 | 2044 | 15 | 0 | 12 | 0 | 15470 | logfile |
✔ | 8ABL | 15325 | 2023-02-28 | 2022-07-04 | 2.1 | 2.00 | 2.04 | 2.0 | 0.010 | 1.69 | 34.0 | 0.11 | 17.94 | 0.01 | 2.060 | 2.82 | 4.41 | 2.2 | 97.8 | 0.0 | -0.94 | 0.73 | 0.90 | 6.29 | 2.0 | 0.003 | 0.57 | 0.0 | 0.04 | 17.41 | 0.00 | 2.188 | 4.24 | 1.06 | 1.3 | 98.7 | 0.0 | 2.13 | 1.31 | 0.74 | 0.90 | 5.67 | 31660 | 3878 | 33 | 0 | 32 | 0 | 0 | logfile |
✔ | 6U6i | 20666 | 2023-02-28 | 2019-08-29 | 3.12 | 3.43 | — | 3.4 | 0.006 | 0.45 | 0.0 | 0.07 | 11.24 | 0.00 | 2.029 | 6.12 | 0.00 | 7.6 | 92.4 | 0.0 | -3.59 | 0.80 | 0.80 | 4.39 | 3.3 | 0.003 | 0.47 | 0.0 | 0.04 | 13.04 | 0.00 | 2.092 | 5.94 | 0.09 | 5.0 | 95.0 | 0.0 | -0.18 | 0.51 | 0.81 | 0.83 | 4.16 | 21701 | 1496 | 9 | 0 | 11 | 0 | 10337 | logfile |
✔ | 7WE9 | 32443 | 2023-02-28 | 2021-12-23 | 3.6 | 3.89 | — | 3.8 | 0.004 | 0.65 | 1.0 | 0.05 | 14.22 | 0.00 | 2.118 | 12.27 | 0.17 | 8.2 | 91.7 | 0.1 | -2.16 | 0.76 | 0.73 | 1.62 | 3.7 | 0.005 | 0.68 | 0.0 | 0.05 | 15.81 | 0.00 | 2.066 | 13.55 | 0.41 | 9.0 | 90.9 | 0.1 | -2.16 | 1.14 | 0.77 | 0.74 | 1.01 | 32043 | 3987 | 32 | 0 | 72 | 0 | 0 | logfile |
✔ | 7MXP | 24075 | 2023-02-28 | 2021-05-19 | 4.46 | 8.21 | — | 4.5 | 0.009 | 1.45 | 7.0 | 0.08 | 14.72 | 0.01 | 2.280 | 7.97 | 0.23 | 8.5 | 91.3 | 0.2 | -3.74 | 0.89 | 0.80 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 13.65 | 0.00 | 2.120 | 23.16 | 0.00 | 8.9 | 91.1 | 0.0 | -2.13 | 1.18 | 0.89 | 0.82 | — | 31664 | 3967 | 19 | 0 | 61 | 0 | 0 | logfile |
✔ | 7YQY | 34039 | 2023-02-28 | 2022-08-08 | 3.74 | 4.03 | 3.84 | 3.9 | 0.003 | 0.60 | 0.0 | 0.06 | 14.10 | 0.01 | 1.925 | 10.62 | 0.18 | 9.0 | 90.9 | 0.1 | -2.25 | 0.80 | 0.81 | 1.73 | 3.9 | 0.006 | 0.71 | 0.0 | 0.05 | 15.58 | 0.00 | 2.091 | 13.72 | 0.41 | 11.0 | 88.9 | 0.0 | -2.00 | 1.16 | 0.81 | 0.82 | 1.54 | 31983 | 3984 | 25 | 0 | 75 | 0 | 0 | logfile |
✔ | 7UAP | 26429 | 2023-02-28 | 2022-03-13 | 2.8 | 2.98 | 2.85 | 3.0 | 0.007 | 1.25 | 12.0 | 0.07 | 13.61 | 0.01 | 2.041 | 19.84 | 0.29 | 7.1 | 92.4 | 0.6 | -2.28 | 0.64 | 0.65 | 1.45 | 3.0 | 0.004 | 0.79 | 0.0 | 0.05 | 16.11 | 0.00 | 2.097 | 13.13 | 3.25 | 7.4 | 92.4 | 0.2 | -1.50 | 1.91 | 0.67 | 0.77 | 1.92 | 31657 | 3957 | 27 | 0 | 59 | 0 | 0 | logfile |
✘ | 8DDS | 27340 | 2023-02-28 | 2022-06-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✔ | 7U32 | 26322 | 2023-02-28 | 2022-02-25 | 3.46 | 3.64 | 3.45 | 3.6 | 0.002 | 0.51 | 0.0 | 0.04 | 14.68 | 0.00 | 2.170 | 7.66 | 0.00 | 2.5 | 97.5 | 0.0 | 0.75 | 0.56 | 0.48 | 1.42 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.78 | 0.00 | 2.090 | 9.90 | 0.27 | 3.2 | 96.7 | 0.1 | 0.48 | 0.98 | 0.72 | 0.72 | 1.35 | 32150 | 3802 | 32 | 64 | 14 | 0 | 0 | logfile |
✘ | 8DDU | 27342 | 2023-02-28 | 2022-06-19 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✔ | 6MHo | 9115 | 2023-02-28 | 2018-09-18 | 3.4 | 3.50 | 3.41 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 7.36 | 0.00 | 2.108 | 2.84 | 0.00 | 2.7 | 97.3 | 0.0 | -2.41 | 0.66 | 0.76 | 3.45 | 3.4 | 0.003 | 0.55 | 0.0 | 0.03 | 12.70 | 0.00 | 2.003 | 6.04 | 0.14 | 4.5 | 95.5 | 0.0 | 0.98 | 2.46 | 0.68 | 0.81 | 3.70 | 32224 | 2404 | 4 | 0 | 0 | 0 | 15184 | logfile |
✔ | 7N8Y | 24249 | 2023-02-28 | 2021-06-16 | 3.65 | 3.83 | — | 3.8 | 0.005 | 0.98 | 0.0 | 0.06 | 14.98 | 0.01 | 2.293 | 8.21 | 0.69 | 8.9 | 90.9 | 0.3 | -5.05 | 0.70 | 0.73 | 1.55 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.22 | 0.00 | 1.997 | 11.09 | 0.46 | 9.4 | 90.6 | 0.0 | -2.57 | 0.60 | 0.70 | 0.75 | 1.16 | 16162 | 2074 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUL | 20203 | 2023-02-28 | 2019-05-04 | 3.4 | 3.56 | — | 3.6 | 0.015 | 1.19 | 0.0 | 0.06 | 14.87 | 0.01 | 2.011 | 34.20 | 0.31 | 12.2 | 87.6 | 0.3 | -4.17 | 0.68 | 0.79 | 2.67 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 17.69 | 0.00 | 2.092 | 10.70 | 0.37 | 6.0 | 93.9 | 0.1 | -0.55 | 1.97 | 0.68 | 0.83 | 1.24 | 31927 | 3751 | 12 | 117 | 6 | 0 | 0 | logfile |
✔ | 7W6T | 32335 | 2023-02-28 | 2021-12-02 | 3.85 | 4.45 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.59 | 0.01 | 2.034 | 32.65 | 0.29 | 10.7 | 89.2 | 0.1 | -4.74 | 0.64 | 0.67 | 0.30 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 16.11 | 0.00 | 2.058 | 24.84 | 0.40 | 7.6 | 92.4 | 0.0 | -1.69 | 1.26 | 0.63 | 0.64 | 0.17 | 31768 | 3934 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LX0 | 23563 | 2023-02-28 | 2021-03-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72462 | 6699 | 60 | 0 | 447 | 0 | 0 | logfile |
✔ | 6NZW | 0562 | 2023-02-28 | 2019-02-14 | 3.21 | 3.76 | — | 3.7 | 0.008 | 0.90 | 0.0 | 0.04 | 13.73 | 0.00 | 2.145 | 3.31 | 3.09 | 3.6 | 96.4 | 0.0 | -3.71 | 0.62 | 0.75 | 2.72 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 15.77 | 0.00 | 1.851 | 8.43 | 0.29 | 4.2 | 95.8 | 0.0 | -0.41 | 0.87 | 0.60 | 0.76 | 1.78 | 31720 | 1878 | 12 | 0 | 19 | 0 | 15714 | logfile |
✔ | 6K43 | 9913 | 2023-02-28 | 2019-05-23 | 3.7 | 4.12 | — | 4.0 | 0.007 | 0.72 | 0.0 | 0.04 | 15.85 | 0.00 | 1.266 | 17.54 | 0.12 | 6.9 | 93.1 | 0.0 | -2.02 | 0.75 | 0.82 | 1.49 | 4.1 | 0.004 | 0.72 | 0.0 | 0.03 | 18.20 | 0.00 | 2.172 | 5.80 | 0.36 | 3.5 | 96.5 | 0.0 | 4.18 | 0.82 | 0.76 | 0.81 | 1.59 | 31808 | 3840 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 7MDM | 23775 | 2023-02-28 | 2021-04-05 | 4.86 | 5.09 | — | 5.0 | 0.005 | 1.19 | 0.0 | 0.07 | 15.37 | 0.01 | 2.261 | 9.38 | 0.03 | 7.9 | 92.1 | 0.0 | -3.53 | 0.82 | 0.77 | — | 4.9 | 0.004 | 0.87 | 0.0 | 0.05 | 14.45 | 0.01 | 2.097 | 32.97 | 0.00 | 8.9 | 91.1 | 0.0 | -2.05 | 2.41 | 0.84 | 0.79 | — | 31986 | 4051 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7L2F | 23127 | 2023-02-28 | 2020-12-16 | 3.9 | 4.52 | 3.98 | 4.1 | 0.007 | 1.13 | 1.0 | 0.08 | 12.21 | 0.02 | 2.265 | 4.49 | 0.47 | 3.1 | 96.9 | 0.0 | -0.15 | 0.85 | 0.73 | 1.17 | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.78 | 0.00 | 2.126 | 11.53 | 0.20 | 3.1 | 96.9 | 0.0 | -0.14 | 1.70 | 0.88 | 0.82 | 1.51 | 32049 | 3970 | 30 | 0 | 74 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2023-02-28 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.11 | 15.50 | 0.01 | 1.112 | 25.55 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |