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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GXM | 0080 | 2024-03-27 | 2018-06-27 | 3.8 | 4.73 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.04 | 22.40 | 0.01 | 1.322 | 6.07 | 0.20 | 8.4 | 91.2 | 0.4 | -4.08 | 0.85 | 0.83 | 0.31 | 4.3 | 0.005 | 0.73 | 0.0 | 0.04 | 23.42 | 0.01 | 2.033 | 27.01 | 5.68 | 10.3 | 89.4 | 0.2 | -1.79 | 1.78 | 0.87 | 0.87 | 0.41 | 151394 | 6643 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 6UZC | 20956 | 2024-03-27 | 2019-11-14 | 4.5 | 5.36 | — | 5.2 | 0.018 | 1.84 | 8.0 | 0.10 | 10.97 | 0.01 | 1.850 | 6.87 | 0.26 | 5.0 | 94.4 | 0.6 | -0.66 | 0.48 | 0.67 | — | 5.2 | 0.003 | 0.80 | 0.0 | 0.05 | 13.33 | 0.00 | 2.066 | 21.54 | 0.03 | 8.5 | 91.4 | 0.1 | -1.22 | 1.80 | 0.51 | 0.72 | — | 150312 | 19473 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GXo | 0082 | 2024-03-27 | 2018-06-27 | 3.9 | 4.77 | — | 4.3 | 0.004 | 0.82 | 4.0 | 0.04 | 22.42 | 0.01 | 0.695 | 7.13 | 0.15 | 8.2 | 91.3 | 0.5 | -3.98 | 0.85 | 0.83 | 0.32 | 4.3 | 0.003 | 0.69 | 0.0 | 0.03 | 23.42 | 0.00 | 2.039 | 21.91 | 5.57 | 9.4 | 90.3 | 0.2 | -1.77 | 1.78 | 0.87 | 0.87 | 0.66 | 151479 | 6643 | 59 | 4643 | 1 | 0 | 0 | logfile |
✔ | 7LVK | 23539 | 2024-03-27 | 2021-02-25 | 2.2 | 2.31 | — | 2.4 | 0.009 | 0.92 | 8.0 | 0.06 | 23.30 | 0.02 | 1.324 | 2.41 | 0.81 | 5.1 | 94.8 | 0.2 | -2.34 | 0.64 | 0.86 | 5.37 | 2.4 | 0.004 | 0.66 | 0.0 | 0.04 | 23.38 | 0.01 | 1.004 | 5.80 | 2.34 | 4.8 | 95.1 | 0.1 | -0.29 | 0.96 | 0.67 | 0.88 | 5.08 | 151436 | 3222 | 63 | 3016 | 181 | 2716 | 58704 | logfile |
✔ | 8AAF | 15296 | 2024-03-27 | 2022-07-01 | 2.5 | 3.21 | — | 2.7 | 0.006 | 0.92 | 8.0 | 0.05 | 21.66 | 0.01 | 1.419 | 4.21 | 1.14 | 3.8 | 96.1 | 0.1 | -0.37 | 0.90 | 0.85 | 3.18 | 2.7 | 0.003 | 0.60 | 1.0 | 0.04 | 21.65 | 0.00 | 1.978 | 9.22 | 1.57 | 4.0 | 95.9 | 0.0 | 0.57 | 1.15 | 0.92 | 0.89 | 2.83 | 151377 | 9427 | 69 | 3640 | 41 | 0 | 0 | logfile |
✘ | 8AGZ | 15428 | 2024-03-27 | 2022-07-20 | 2.6 | 3.24 | 2.62 | 2.6 | 0.006 | 0.91 | 7.0 | 0.05 | 21.69 | 0.01 | 1.172 | 5.43 | 1.49 | 3.7 | 96.2 | 0.1 | -0.39 | 0.92 | 0.89 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151339 | 9427 | 69 | 3640 | 41 | 0 | 0 | logfile |
✔ | 7MSH | 23962 | 2024-03-27 | 2021-05-11 | 3.23 | 2.43 | — | 3.0 | 0.008 | 0.89 | 0.0 | 0.05 | 22.51 | 0.01 | 1.993 | 3.36 | 0.06 | 8.8 | 91.1 | 0.1 | -4.94 | 0.80 | 0.81 | 3.38 | 3.0 | 0.009 | 0.81 | 0.0 | 0.05 | 22.47 | 0.01 | 1.743 | 9.11 | 2.81 | 8.6 | 91.3 | 0.0 | -2.29 | 1.15 | 0.81 | 0.83 | 2.53 | 152103 | 6149 | 71 | 4833 | 428 | 0 | 0 | logfile |
✔ | 7CKC | 30385 | 2024-03-27 | 2020-07-16 | 2.9 | 2.95 | — | 2.9 | 0.007 | 0.92 | 0.0 | 0.05 | 16.47 | 0.01 | 2.090 | 5.46 | 0.00 | 2.2 | 97.8 | 0.0 | -0.01 | 0.81 | 0.87 | 3.65 | 2.9 | 0.006 | 0.75 | 0.0 | 0.05 | 17.84 | 0.00 | 2.077 | 5.64 | 4.35 | 2.1 | 97.9 | 0.0 | 0.35 | 1.54 | 0.81 | 0.88 | 3.59 | 150300 | 20820 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZLU | 6934 | 2024-03-27 | 2018-03-29 | 3.6 | 3.66 | — | 3.6 | 0.008 | 1.26 | 2.0 | 0.07 | 24.87 | 0.01 | 0.401 | 13.10 | 2.52 | 18.9 | 79.1 | 1.9 | -5.90 | 0.78 | 0.77 | 1.74 | 3.6 | 0.004 | 0.84 | 1.0 | 0.04 | 24.65 | 0.01 | 2.059 | 12.70 | 6.90 | 19.8 | 79.4 | 0.7 | -4.50 | 0.55 | 0.78 | 0.78 | 0.91 | 150313 | 6529 | 60 | 4596 | 4 | 0 | 0 | logfile |
✔ | 7ACR | 11718 | 2024-03-27 | 2020-09-11 | 3.44 | 3.72 | 3.11 | 2.6 | 0.003 | 0.65 | 21.0 | 0.04 | 23.55 | 0.02 | 0.444 | 14.05 | 1.77 | 5.3 | 94.3 | 0.4 | -1.02 | 0.87 | 0.78 | 1.12 | 2.5 | 0.004 | 0.70 | 0.0 | 0.04 | 23.96 | 0.01 | 1.051 | 19.40 | 4.59 | 7.8 | 92.1 | 0.1 | -1.60 | 1.63 | 0.89 | 0.84 | 1.23 | 151668 | 5858 | 66 | 4920 | 214 | 0 | 0 | logfile |
✔ | 6GWT | 0076 | 2024-03-27 | 2018-06-25 | 3.8 | 4.53 | — | 4.2 | 0.004 | 0.84 | 5.0 | 0.04 | 22.39 | 0.01 | 1.272 | 6.02 | 0.19 | 8.2 | 91.3 | 0.5 | -4.05 | 0.85 | 0.83 | 0.58 | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 23.43 | 0.01 | 1.975 | 25.61 | 6.83 | 11.0 | 88.6 | 0.4 | -1.97 | 1.77 | 0.87 | 0.88 | 0.79 | 151484 | 6670 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 6DZi | 8932 | 2024-03-27 | 2018-07-05 | 3.46 | 3.52 | — | 3.5 | 0.011 | 1.05 | 21.0 | 0.07 | 23.51 | 0.01 | 1.028 | 7.00 | 0.62 | 9.8 | 89.5 | 0.8 | -4.46 | 0.78 | 0.79 | 2.41 | 3.5 | 0.003 | 0.62 | 0.0 | 0.03 | 23.45 | 0.00 | 2.010 | 10.85 | 3.27 | 6.7 | 93.3 | 0.0 | -1.34 | 1.22 | 0.82 | 0.84 | 1.68 | 150868 | 6283 | 56 | 4748 | 0 | 0 | 0 | logfile |
✔ | 5o61 | 3751 | 2024-03-27 | 2017-06-03 | 3.31 | 3.39 | — | 3.3 | 0.007 | 0.99 | 0.0 | 0.04 | 24.46 | 0.01 | 1.579 | 7.50 | 10.91 | 4.7 | 95.1 | 0.2 | -3.02 | 0.83 | 0.88 | 2.03 | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 23.97 | 0.00 | 1.052 | 11.55 | 7.11 | 4.7 | 95.3 | 0.0 | -0.14 | 0.65 | 0.83 | 0.87 | 1.63 | 151463 | 6088 | 73 | 4830 | 631 | 0 | 0 | logfile |
✔ | 6WD7 | 21626 | 2024-03-27 | 2020-03-31 | 3.9 | 4.24 | 4.25 | 4.1 | 0.006 | 0.98 | 0.0 | 0.08 | 21.85 | 0.01 | 2.166 | 9.61 | 0.62 | 11.7 | 86.5 | 1.9 | -4.81 | 0.81 | 0.80 | 0.76 | 4.0 | 0.006 | 0.78 | 0.0 | 0.04 | 23.68 | 0.01 | 2.026 | 30.15 | 7.73 | 11.3 | 88.6 | 0.1 | -2.80 | 1.55 | 0.84 | 0.83 | 0.64 | 150887 | 6113 | 60 | 4809 | 0 | 0 | 0 | logfile |
✔ | 7D80 | 30611 | 2024-03-27 | 2020-10-06 | 4.1 | 6.37 | — | 2.8 | 0.011 | 1.03 | 0.0 | 0.05 | 23.71 | 0.01 | 1.560 | 8.53 | 0.88 | 12.7 | 86.9 | 0.3 | -5.50 | 0.81 | 0.63 | — | 2.8 | 0.006 | 0.70 | 0.0 | 0.04 | 23.60 | 0.01 | 1.929 | 36.44 | 0.00 | 11.6 | 88.2 | 0.2 | -2.87 | 0.81 | 0.94 | 0.88 | — | 150808 | 6218 | 57 | 4761 | 0 | 0 | 0 | logfile |
✔ | 6GXN | 0081 | 2024-03-27 | 2018-06-27 | 3.9 | 4.79 | — | 4.3 | 0.003 | 0.80 | 4.0 | 0.04 | 22.41 | 0.01 | 1.098 | 6.08 | 0.17 | 8.1 | 91.4 | 0.5 | -4.05 | 0.86 | 0.83 | 0.48 | 4.3 | 0.007 | 0.79 | 2.0 | 0.04 | 23.58 | 0.01 | 1.518 | 32.86 | 7.73 | 10.7 | 89.0 | 0.3 | -1.99 | 1.82 | 0.88 | 0.88 | 0.70 | 151860 | 6741 | 59 | 4638 | 1 | 0 | 0 | logfile |
✔ | 5A9Z | 6396 | 2024-03-27 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 28.05 | 0.03 | 0.000 | 199.42 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.006 | 0.94 | 0.0 | 0.04 | 25.37 | 0.01 | 0.000 | 36.51 | 0.22 | 20.5 | 77.2 | 2.3 | -4.19 | 2.91 | 0.87 | 0.81 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 7UA3 | 26413 | 2024-03-27 | 2022-03-11 | 2.97 | 3.02 | — | 1.7 | 0.003 | 0.69 | 0.0 | 0.04 | 14.13 | 0.01 | 1.967 | 9.63 | 0.52 | 3.9 | 95.9 | 0.2 | 1.12 | 0.85 | 0.80 | 3.29 | 1.8 | 0.005 | 0.65 | 1.0 | 0.04 | 15.04 | 0.00 | 1.628 | 11.05 | 0.56 | 3.7 | 96.1 | 0.2 | 1.37 | 0.35 | 0.87 | 0.84 | 3.27 | 150252 | 18768 | 16 | 0 | 12 | 0 | 0 | logfile |
✔ | 5ZEB | 6920 | 2024-03-26 | 2018-02-27 | 3.4 | 3.46 | — | 3.4 | 0.010 | 1.18 | 2.0 | 0.06 | 24.03 | 0.01 | 1.088 | 18.34 | 3.23 | 8.4 | 90.3 | 1.4 | -3.95 | 0.79 | 0.77 | 1.84 | 3.4 | 0.007 | 0.80 | 0.0 | 0.04 | 23.71 | 0.01 | 1.956 | 14.34 | 3.86 | 9.4 | 90.3 | 0.3 | -1.56 | 4.01 | 0.82 | 0.84 | 1.63 | 150328 | 6095 | 56 | 4802 | 0 | 0 | 0 | logfile |
✔ | 6GSi | 0056 | 2024-03-26 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 13.34 | 0.00 | 1.865 | 11.53 | 1.50 | 9.4 | 90.5 | 0.1 | -2.58 | 0.94 | 0.57 | 0.84 | 2.80 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |