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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JD6 | 6425 | 2024-04-17 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 32.0 | 0.12 | 14.71 | 0.02 | 1.693 | 5.06 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.60 | 0.42 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 13.91 | 0.00 | 1.955 | 11.39 | 0.00 | 14.2 | 85.8 | 0.0 | -2.22 | 2.14 | 0.85 | 0.80 | — | 43088 | 2672 | 16 | 0 | 0 | 0 | 21216 | logfile |
✘ | 6GiQ | 0004 | 2024-04-17 | 2018-05-15 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44120 | 5439 | 42 | 0 | 57 | 0 | 0 | logfile |
✔ | 7RDZ | 24428 | 2024-04-17 | 2021-07-12 | 3.6 | 4.40 | — | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 13.79 | 0.00 | 1.855 | 6.12 | 0.00 | 5.2 | 94.8 | 0.0 | -0.55 | 0.88 | 0.77 | 1.81 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 14.60 | 0.00 | 1.756 | 9.08 | 1.01 | 5.8 | 94.2 | 0.0 | -0.34 | 1.22 | 0.88 | 0.76 | 1.76 | 41820 | 2551 | 11 | 71 | 10 | 0 | 20348 | logfile |
✔ | 6ZXK | 11523 | 2024-04-17 | 2020-07-29 | 3.8 | 4.20 | — | 4.0 | 0.011 | 1.21 | 2.0 | 0.07 | 12.01 | 0.01 | 1.950 | 20.91 | 0.34 | 7.9 | 91.7 | 0.4 | -2.91 | 0.70 | 0.76 | 1.72 | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 14.97 | 0.00 | 2.139 | 13.30 | 3.23 | 5.0 | 95.0 | 0.0 | -0.31 | 1.28 | 0.68 | 0.75 | 1.69 | 42292 | 5772 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z1M | 14448 | 2024-04-17 | 2022-02-24 | 3.4 | 3.57 | 3.50 | 3.5 | 0.004 | 0.69 | 0.0 | 0.05 | 15.31 | 0.00 | 2.100 | 4.76 | 0.00 | 3.3 | 96.7 | 0.0 | -0.32 | 0.88 | 0.84 | 2.45 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.52 | 0.00 | 2.024 | 7.93 | 1.10 | 3.0 | 96.9 | 0.0 | 0.45 | 0.29 | 0.89 | 0.86 | 2.15 | 42122 | 5153 | 26 | 53 | 10 | 0 | 0 | logfile |
✘ | 5KCR | 8237 | 2024-04-17 | 2016-06-06 | 3.6 | 4.09 | — | 4.0 | 0.006 | 0.62 | 0.0 | 0.07 | 22.21 | 0.01 | 2.027 | 6.59 | 0.46 | 5.7 | 92.7 | 1.7 | -2.61 | 0.75 | 0.79 | 1.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145689 | 5854 | 57 | 4646 | 2 | 0 | 0 | logfile |
✔ | 7YXX | 14368 | 2024-04-17 | 2022-02-16 | 3.3 | 3.86 | 3.20 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 14.01 | 0.00 | 2.196 | 12.44 | 0.26 | 5.1 | 94.7 | 0.2 | -0.96 | 0.81 | 0.75 | 1.65 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.12 | 0.00 | 2.169 | 13.01 | 0.37 | 5.2 | 94.7 | 0.1 | 0.53 | 0.95 | 0.82 | 0.81 | 1.35 | 42357 | 5249 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ATU | 15663 | 2024-04-17 | 2022-08-24 | 3.3 | 2.76 | 3.44 | 3.2 | 0.003 | 0.76 | 0.0 | 0.04 | 16.63 | 0.01 | 2.263 | 7.30 | 0.36 | 3.5 | 96.5 | 0.0 | -1.00 | 0.54 | 0.70 | 0.73 | 3.2 | 0.004 | 0.79 | 4.0 | 0.04 | 17.02 | 0.01 | 2.171 | 13.92 | 3.64 | 2.7 | 97.3 | 0.0 | 0.76 | 0.46 | 0.56 | 0.74 | 1.07 | 43882 | 5674 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7FGi | 31582 | 2024-04-17 | 2021-07-27 | 2.51 | 2.92 | — | 2.7 | 0.012 | 0.87 | 0.0 | 0.05 | 16.88 | 0.00 | 1.814 | 1.37 | 2.16 | 3.0 | 97.0 | 0.0 | -0.36 | 0.77 | 0.79 | 3.39 | 2.7 | 0.002 | 0.50 | 0.0 | 0.04 | 16.77 | 0.00 | 2.197 | 1.32 | 0.81 | 1.6 | 98.4 | 0.0 | 0.54 | 0.32 | 0.85 | 0.91 | 3.87 | 42288 | 5256 | 24 | 24 | 36 | 0 | 0 | logfile |
✘ | 7JT1 | 22466 | 2024-04-17 | 2020-08-16 | 3.3 | 3.84 | 3.70 | 3.5 | 0.007 | 0.99 | 0.0 | 0.08 | 22.46 | 0.01 | 2.234 | 13.03 | 1.20 | 10.8 | 87.1 | 2.0 | -5.23 | 0.88 | 0.83 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145600 | 5828 | 55 | 4659 | 0 | 0 | 0 | logfile |
✔ | 7DoP | 30796 | 2024-04-17 | 2020-12-15 | 2.38 | 2.46 | — | 2.5 | 0.005 | 0.78 | 0.0 | 0.05 | 16.24 | 0.01 | 1.895 | 5.58 | 2.21 | 3.7 | 96.3 | 0.0 | -1.87 | 0.65 | 0.82 | 3.09 | 2.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.29 | 0.00 | 2.000 | 3.94 | 1.78 | 2.5 | 97.5 | 0.0 | 0.33 | 0.36 | 0.68 | 0.85 | 2.60 | 41700 | 5352 | 24 | 0 | 12 | 0 | 0 | logfile |
✘ | 6MiX | 9132 | 2024-04-17 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.79 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7TF6 | 25863 | 2024-04-17 | 2022-01-06 | 2.15 | 2.26 | — | 2.3 | 0.002 | 0.51 | 0.0 | 0.04 | 16.47 | 0.00 | 2.048 | 4.68 | 1.34 | 3.7 | 96.3 | 0.0 | 0.26 | 0.48 | 0.71 | 5.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43272 | 5400 | 36 | 0 | 24 | 0 | 120 | logfile |
✘ | 6GEJ | 4395 | 2024-04-17 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.74 | 0.00 | 1.491 | 9.10 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✔ | 6YTo | 10920 | 2024-04-17 | 2020-04-24 | 4.24 | 4.32 | 4.19 | 4.3 | 0.005 | 0.70 | 0.0 | 0.04 | 13.41 | 0.00 | 2.282 | 10.19 | 0.00 | 1.9 | 98.1 | 0.0 | -0.08 | 0.67 | 0.83 | — | 4.3 | 0.003 | 0.63 | 0.0 | 0.04 | 13.37 | 0.00 | 2.243 | 8.46 | 0.00 | 3.0 | 97.0 | 0.0 | 2.78 | 0.70 | 0.67 | 0.83 | — | 41620 | 5340 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z0V | 11024 | 2024-04-17 | 2020-05-11 | 2.6 | 2.68 | — | 2.6 | 0.010 | 0.87 | 0.0 | 0.06 | 13.09 | 0.01 | 1.818 | 9.89 | 0.27 | 5.3 | 94.7 | 0.0 | -2.69 | 0.73 | 0.87 | 5.10 | 2.7 | 0.003 | 0.59 | 0.0 | 0.04 | 14.81 | 0.00 | 2.003 | 7.48 | 0.87 | 2.3 | 97.7 | 0.0 | 0.41 | 0.91 | 0.74 | 0.86 | 4.27 | 42972 | 5424 | 36 | 0 | 12 | 936 | 0 | logfile |
✔ | 6Z80 | 11113 | 2024-04-17 | 2020-06-02 | 3.0 | 3.21 | — | 3.2 | 0.015 | 1.21 | 0.0 | 0.07 | 10.24 | 0.01 | 2.030 | 3.48 | 0.00 | 3.4 | 96.2 | 0.4 | -3.67 | 0.70 | 0.73 | 3.14 | 3.2 | 0.003 | 0.66 | 0.0 | 0.05 | 16.12 | 0.00 | 2.135 | 7.06 | 4.32 | 3.8 | 96.2 | 0.0 | -0.36 | 2.53 | 0.65 | 0.77 | 2.00 | 21460 | 2660 | 40 | 0 | 20 | 0 | 0 | logfile |
✔ | 7D84 | 30612 | 2024-04-17 | 2020-10-07 | 3.7 | 4.34 | 3.76 | 4.2 | 0.009 | 0.90 | 0.0 | 0.05 | 15.25 | 0.01 | 2.271 | 6.09 | 7.78 | 2.1 | 97.9 | 0.0 | -2.70 | 0.84 | 0.84 | 2.66 | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 17.90 | 0.00 | 2.103 | 12.40 | 3.50 | 0.6 | 99.4 | 0.0 | 0.70 | 1.33 | 0.82 | 0.82 | 2.72 | 42704 | 5406 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JCH | 36162 | 2024-04-17 | 2023-05-11 | 2.7 | 3.42 | 2.84 | 3.2 | 0.002 | 0.54 | 0.0 | 0.04 | 18.22 | 0.00 | 2.031 | 8.60 | 2.29 | 4.3 | 95.7 | 0.0 | 0.88 | 0.81 | 0.82 | 1.90 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 18.25 | 0.00 | 2.017 | 8.90 | 2.40 | 4.6 | 95.4 | 0.0 | 0.62 | 0.45 | 0.79 | 0.82 | 2.06 | 42732 | 5119 | 26 | 99 | 11 | 0 | 0 | logfile |
✔ | 8K5P | 36908 | 2024-04-17 | 2023-07-23 | 2.8 | 3.48 | 2.88 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 18.20 | 0.00 | 2.104 | 8.46 | 2.24 | 4.5 | 95.5 | 0.0 | 0.74 | 0.81 | 0.82 | 1.68 | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 18.52 | 0.00 | 2.029 | 10.00 | 2.76 | 5.3 | 94.6 | 0.0 | 0.32 | 0.48 | 0.81 | 0.84 | 2.15 | 42713 | 5127 | 26 | 96 | 11 | 0 | 0 | logfile |