Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MoA	23922	2022-12-12	2021-05-01	4.9	4.75	—	4.0	0.011	1.36	0.0	0.08	18.24	0.01	1.983	27.95	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.74	0.0	0.05	13.32	0.00	2.117	22.38	0.07	6.9	93.0	0.1	-1.35	1.47	0.84	0.79	—	12511	1580	5	0	12	0	0	logfile
✔	7A1D	11606	2022-12-18	2020-08-12	4.19	4.02	4.19	4.1	0.006	1.04	0.0	0.06	10.62	0.01	2.253	7.83	0.35	8.4	91.6	0.0	-4.40	0.83	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33032	4252	4	0	0	0	0	logfile
✔	7AKD	11812	2022-12-15	2020-09-30	4.0	3.98	—	4.0	0.003	0.64	0.0	0.05	13.02	0.00	2.126	2.92	0.21	2.7	97.3	0.0	-1.66	0.74	0.77	—	4.0	0.004	0.66	0.0	0.05	14.69	0.00	2.122	5.85	0.31	4.3	95.7	0.0	-0.37	1.24	0.75	0.79	—	27358	3404	29	0	79	0	0	logfile
✔	7B6E	12053	2022-12-11	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.98	0.0	0.05	14.71	0.00	2.119	24.18	0.00	10.9	89.1	0.0	-1.33	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	7M2Y	23637	2022-12-14	2021-03-17	4.03	4.58	3.93	4.4	0.022	1.80	0.0	0.11	10.99	0.01	1.961	4.31	0.05	2.2	97.6	0.3	0.03	0.52	0.71	—	4.4	0.004	0.76	0.0	0.04	13.21	0.00	2.167	20.49	0.10	5.6	94.2	0.2	-0.32	1.80	0.52	0.76	—	18560	2278	7	2	0	0	0	logfile
✔	7LLK	23424	2022-12-20	2021-02-04	4.8	7.00	4.88	4.8	0.014	2.12	14.0	0.12	15.77	0.02	2.051	2.46	4.52	12.6	84.8	2.6	-3.42	0.81	0.73	—	4.8	0.006	0.85	0.0	0.05	13.38	0.01	1.739	35.22	0.19	16.8	82.8	0.5	-3.78	0.89	0.84	0.79	—	38982	2397	47	0	108	0	18627	logfile
✔	7NBX	12262	2022-12-14	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.005	0.69	0.0	0.04	14.27	0.00	1.835	16.83	0.00	12.7	87.3	0.0	-2.53	0.70	0.76	0.81	—	22637	1475	5	0	0	0	11129	logfile
✔	7ENJ	31211	2022-12-12	2021-04-17	4.4	4.62	—	4.0	0.011	1.18	16.0	0.07	15.29	0.01	2.211	7.87	1.23	5.7	93.7	0.6	-2.67	0.75	0.49	—	4.1	0.003	0.67	0.0	0.04	14.09	0.00	2.106	12.63	0.02	5.0	94.9	0.1	1.41	0.72	0.81	0.66	—	57971	7340	27	0	21	0	0	logfile
✔	7LJF	23392	2022-12-13	2021-01-29	4.0	4.34	—	4.2	0.003	0.62	0.0	0.04	13.74	0.00	1.987	14.43	0.41	3.4	96.6	0.0	0.00	0.83	0.80	—	4.2	0.006	0.77	0.0	0.05	15.72	0.00	1.752	24.09	0.41	6.1	93.9	0.0	-0.76	0.36	0.83	0.82	—	15742	2007	9	0	6	0	0	logfile
✔	7EWQ	31361	2022-12-21	2021-05-25	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43232	5236	28	84	0	0	0	logfile
✔	7NNH	12477	2022-12-11	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	1.12	0.0	0.05	16.96	0.01	2.112	27.04	0.17	20.2	79.5	0.3	-2.67	1.12	0.74	0.79	—	5299	637	1	0	0	0	0	logfile
✔	6ZGD	11202	2022-12-12	2020-06-18	4.1	4.30	3.99	4.2	0.006	0.62	0.0	0.05	10.93	0.01	2.137	10.94	0.61	4.6	95.4	0.0	-1.11	0.74	0.82	—	4.2	0.003	0.61	0.0	0.05	11.97	0.00	2.182	9.05	0.12	2.4	97.6	0.0	-0.46	1.00	0.71	0.81	—	10175	1440	5	0	0	0	0	logfile
✔	7BNQ	12232	2022-12-12	2021-01-22	4.1	4.35	4.09	4.2	0.005	0.80	0.0	0.05	14.89	0.01	2.293	4.99	0.32	5.4	94.6	0.0	-3.83	0.78	0.86	—	4.2	0.003	0.61	0.0	0.04	14.26	0.00	2.213	9.59	0.00	5.4	94.6	0.0	-1.42	1.21	0.78	0.85	—	11617	1488	5	0	0	0	0	logfile
✔	6ZY7	11553	2022-12-14	2020-07-30	4.64	8.26	4.84	4.6	0.009	1.01	0.0	0.08	12.28	0.01	2.218	6.62	0.00	1.7	98.3	0.0	-1.71	0.93	0.83	—	4.6	0.003	0.63	0.0	0.04	13.94	0.00	2.117	20.08	0.00	3.1	96.9	0.0	-0.62	2.30	0.94	0.82	—	19979	2319	10	60	4	0	0	logfile
✔	7NVR	12610	2022-12-17	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.82	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	3.5	0.003	0.63	0.0	0.04	15.27	0.00	1.962	14.53	0.01	4.2	95.8	0.0	0.44	1.67	0.73	0.54	—	96126	11548	71	128	157	0	0	logfile
✔	7M2W	23635	2022-12-20	2021-03-17	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39366	4827	16	0	4	0	0	logfile
✔	7EGA	31110	2022-12-16	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.80	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.004	0.71	0.0	0.04	15.57	0.00	1.930	15.63	0.00	5.4	94.5	0.1	-0.50	1.39	0.75	0.55	—	85697	10273	49	170	11	0	0	logfile
✔	7Mo8	23920	2022-12-12	2021-05-01	4.5	3.94	—	3.6	0.008	1.00	0.0	0.05	16.57	0.01	2.070	31.41	0.00	9.8	90.2	0.0	-1.95	0.82	0.75	—	3.6	0.003	0.64	0.0	0.04	14.30	0.00	2.157	19.88	0.00	5.9	94.1	0.0	-1.49	2.28	0.83	0.75	—	9877	1250	3	0	6	0	0	logfile
✔	7ET2	31296	2022-12-20	2021-05-12	4.2	4.39	—	4.3	0.006	1.04	0.0	0.06	16.25	0.01	2.282	6.63	0.41	4.5	95.5	0.0	-4.80	0.52	0.78	—	4.3	0.003	0.77	0.0	0.04	15.04	0.01	2.032	17.03	0.22	3.9	96.1	0.0	-1.71	0.72	0.46	0.79	—	38880	4812	12	0	0	0	0	logfile
✔	7N1Y	24127	2022-12-15	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.91	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	1.8	0.007	0.98	0.0	0.06	14.76	0.01	1.905	23.67	0.04	9.7	90.3	0.0	-2.27	0.72	0.79	0.65	—	26636	3242	31	0	91	0	0	logfile

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