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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7ZSA | 14928 | 2024-03-18 | 2022-05-06 | 4.0 | 3.53 | 3.63 | 3.5 | 0.004 | 0.75 | 0.0 | 0.05 | 16.32 | 0.01 | 1.361 | 6.83 | 0.00 | 2.9 | 97.1 | 0.0 | -1.01 | 0.76 | 0.69 | — | 3.5 | 0.004 | 0.67 | 3.0 | 0.04 | 18.12 | 0.00 | 1.714 | 13.97 | 1.58 | 3.1 | 96.9 | 0.0 | 0.24 | 0.47 | 0.78 | 0.72 | — | 86388 | 9723 | 50 | 418 | 19 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2024-03-12 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.37 | 0.00 | 2.144 | 19.50 | 0.00 | 3.7 | 95.9 | 0.4 | -0.66 | 1.39 | 0.24 | 0.60 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V9C | 31815 | 2024-03-19 | 2021-08-24 | 4.5 | 3.01 | 4.36 | 3.5 | 0.002 | 0.44 | 0.0 | 0.03 | 28.92 | 0.00 | 2.240 | 8.56 | 1.27 | 5.0 | 94.1 | 0.9 | -0.37 | 0.60 | 0.38 | — | 2.9 | 0.005 | 0.77 | 0.0 | 0.04 | 29.15 | 0.01 | 2.069 | 23.07 | 0.32 | 5.1 | 94.6 | 0.3 | 0.35 | 1.59 | 0.73 | 0.60 | — | 23228 | 1518 | 18 | 546 | 0 | 0 | 0 | logfile |
✔ | 6U8Y | 20692 | 2024-03-25 | 2019-09-06 | 4.0 | 4.11 | — | 4.0 | 0.008 | 1.21 | 1.0 | 0.06 | 15.79 | 0.01 | 2.209 | 8.36 | 2.01 | 12.1 | 87.5 | 0.3 | -5.88 | 0.74 | 0.78 | — | 4.0 | 0.005 | 0.97 | 3.0 | 0.05 | 16.86 | 0.00 | 1.867 | 20.73 | 4.39 | 10.7 | 89.1 | 0.1 | -2.46 | 0.67 | 0.74 | 0.78 | — | 48364 | 6140 | 30 | 0 | 6 | 0 | 0 | logfile |
✔ | 6MAR | 9062 | 2024-03-17 | 2018-08-28 | 4.5 | 4.66 | 4.48 | 4.4 | 0.007 | 1.04 | 0.0 | 0.07 | 16.84 | 0.01 | 2.031 | 7.46 | 0.26 | 9.8 | 90.0 | 0.2 | -3.41 | 0.78 | 0.81 | — | 4.4 | 0.005 | 0.84 | 0.0 | 0.05 | 11.72 | 0.00 | 2.095 | 17.33 | 0.05 | 9.4 | 90.6 | 0.0 | -1.78 | 1.38 | 0.78 | 0.82 | — | 19211 | 2225 | 47 | 0 | 130 | 0 | 0 | logfile |
✔ | 7TW2 | 26148 | 2024-03-15 | 2022-02-06 | 4.8 | 4.73 | — | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.67 | 0.01 | 2.177 | 9.73 | 0.07 | 2.2 | 97.8 | 0.0 | -1.27 | 0.66 | 0.72 | — | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 13.86 | 0.00 | 2.160 | 15.47 | 0.00 | 2.8 | 97.2 | 0.0 | 1.21 | 1.65 | 0.66 | 0.75 | — | 12838 | 1619 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8E9i | 27965 | 2024-03-23 | 2022-08-26 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35471 | 5048 | 22 | 0 | 14 | 0 | 0 | logfile |
✔ | 5NCo | 3617 | 2024-03-20 | 2017-03-06 | 4.8 | 5.02 | — | 4.8 | 0.007 | 1.14 | 0.0 | 0.05 | 23.35 | 0.00 | 1.168 | 8.54 | 9.43 | 3.1 | 96.8 | 0.1 | -2.95 | 0.70 | 0.76 | — | 4.8 | 0.004 | 0.70 | 0.0 | 0.04 | 22.85 | 0.00 | 1.213 | 26.45 | 0.03 | 5.2 | 94.7 | 0.1 | -0.07 | 1.18 | 0.71 | 0.84 | — | 101694 | 4738 | 43 | 3112 | 46 | 0 | 0 | logfile |
✔ | 7QY7 | 14209 | 2024-03-20 | 2022-01-27 | 4.7 | 5.28 | — | 4.8 | 0.007 | 1.21 | 6.0 | 0.06 | 11.96 | 0.01 | 1.015 | 21.97 | 1.70 | 10.3 | 88.9 | 0.8 | -4.62 | 0.85 | 0.74 | — | 4.8 | 0.004 | 0.77 | 0.0 | 0.04 | 12.64 | 0.00 | 1.999 | 25.87 | 0.05 | 10.1 | 89.7 | 0.1 | -1.52 | 0.94 | 0.87 | 0.81 | — | 99911 | 12865 | 51 | 0 | 6 | 0 | 0 | logfile |
✔ | 7VHJ | 31996 | 2024-03-19 | 2021-09-22 | 4.2 | 4.29 | — | 4.2 | 0.004 | 0.65 | 0.0 | 0.04 | 13.11 | 0.00 | 2.109 | 15.60 | 0.07 | 8.2 | 91.8 | 0.0 | -3.85 | 0.76 | 0.79 | — | 4.2 | 0.005 | 0.70 | 0.0 | 0.04 | 13.42 | 0.00 | 2.048 | 15.20 | 0.00 | 8.0 | 92.0 | 0.0 | -1.58 | 0.56 | 0.76 | 0.79 | — | 25353 | 3257 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TW1 | 26147 | 2024-03-19 | 2022-02-06 | 4.6 | 3.99 | — | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 13.82 | 0.00 | 2.117 | 7.55 | 0.08 | 2.5 | 97.5 | 0.0 | -0.20 | 0.75 | 0.78 | — | 3.7 | 0.005 | 0.71 | 0.0 | 0.04 | 14.02 | 0.00 | 2.104 | 15.31 | 0.00 | 5.1 | 94.9 | 0.0 | -0.47 | 1.17 | 0.75 | 0.79 | — | 23625 | 2993 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MLU | 23910 | 2024-03-18 | 2021-04-29 | 4.1 | 5.27 | — | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 9.81 | 0.01 | 2.271 | 7.00 | 0.21 | 6.4 | 93.6 | 0.0 | -4.41 | 0.72 | 0.65 | — | 4.2 | 0.003 | 0.77 | 0.0 | 0.04 | 11.75 | 0.00 | 2.146 | 22.08 | 0.00 | 7.2 | 92.8 | 0.0 | -1.80 | 1.32 | 0.75 | 0.77 | — | 21886 | 2746 | 20 | 0 | 5 | 0 | 0 | logfile |
✘ | 7VFW | 31961 | 2024-03-18 | 2021-09-13 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19746 | 2383 | 8 | 0 | 39 | 0 | 0 | logfile |
✔ | 6PWF | 20507 | 2024-03-16 | 2019-07-22 | 4.07 | 4.13 | — | 4.1 | 0.009 | 1.01 | 0.0 | 0.06 | 26.98 | 0.01 | 2.066 | 6.15 | 0.11 | 9.8 | 90.2 | 0.0 | -6.10 | 0.64 | 0.76 | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 26.90 | 0.00 | 2.060 | 11.29 | 0.00 | 6.9 | 93.1 | 0.0 | -2.60 | 1.13 | 0.64 | 0.76 | — | 15197 | 1208 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 7QYB | 14211 | 2024-03-21 | 2022-01-27 | 4.1 | 4.73 | — | 4.3 | 0.005 | 1.08 | 4.0 | 0.06 | 11.75 | 0.01 | 1.183 | 9.46 | 1.40 | 9.2 | 90.1 | 0.7 | -5.13 | 0.86 | 0.78 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.05 | 12.75 | 0.00 | 1.880 | 18.81 | 0.05 | 10.0 | 89.9 | 0.2 | -1.15 | 2.92 | 0.88 | 0.84 | — | 105037 | 13488 | 52 | 0 | 11 | 0 | 0 | logfile |
✔ | 7L8G | 23233 | 2024-03-16 | 2020-12-31 | 4.3 | 4.35 | 4.01 | 4.1 | 0.022 | 1.76 | 0.0 | 0.16 | 11.31 | 0.02 | 2.354 | 1.35 | 0.00 | 1.2 | 98.8 | 0.0 | 0.64 | 0.79 | 0.81 | — | 4.1 | 0.006 | 0.78 | 0.0 | 0.05 | 12.14 | 0.00 | 1.999 | 13.27 | 0.00 | 4.6 | 95.4 | 0.0 | -0.56 | 1.72 | 0.79 | 0.83 | — | 15802 | 1695 | 39 | 0 | 307 | 0 | 0 | logfile |
✘ | 7UK4 | 26574 | 2024-03-16 | 2022-03-31 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14487 | 1856 | 6 | 0 | 2 | 390 | 0 | logfile |
✔ | 6CS1 | 7579 | 2024-03-20 | 2018-03-19 | 4.6 | 4.79 | 4.84 | 6.8 | 0.006 | 0.92 | 0.0 | 0.06 | 13.39 | 0.01 | 2.229 | 7.26 | 0.00 | 7.2 | 92.8 | 0.0 | -4.20 | 0.61 | 0.31 | — | 4.6 | 0.004 | 0.84 | 0.0 | 0.05 | 11.48 | 0.01 | 1.983 | 23.93 | 0.00 | 9.1 | 90.9 | 0.0 | -2.58 | 1.88 | 0.71 | 0.57 | — | 25995 | 3202 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 7MLV | 23911 | 2024-03-16 | 2021-04-29 | 4.1 | 4.82 | — | 3.9 | 0.005 | 1.02 | 0.0 | 0.06 | 15.50 | 0.01 | 2.168 | 5.10 | 0.00 | 7.1 | 92.9 | 0.0 | -5.14 | 0.62 | 0.41 | — | 3.9 | 0.014 | 1.06 | 0.0 | 0.05 | 12.57 | 0.01 | 2.049 | 32.49 | 0.00 | 12.3 | 87.7 | 0.0 | -3.48 | 1.74 | 0.71 | 0.71 | — | 15055 | 1919 | 16 | 0 | 22 | 0 | 0 | logfile |
✘ | 7VFU | 31959 | 2024-03-18 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19946 | 2409 | 9 | 0 | 41 | 0 | 0 | logfile |