Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K3A	22654	2023-02-23	2020-09-10	4.2	4.49	—	4.2	0.004	0.73	0.0	0.05	12.62	0.00	2.053	12.86	0.17	5.1	94.9	0.0	-0.62	0.85	0.73	—	4.2	0.003	0.68	0.0	0.05	12.67	0.00	2.099	16.25	0.00	4.8	95.2	0.0	-0.52	2.08	0.91	0.83	—	21426	2691	27	0	54	0	0	logfile
✔	6NUW	0523	2023-02-22	2019-02-03	4.25	4.40	—	4.2	0.012	1.45	1.0	0.07	14.25	0.01	1.219	13.65	6.01	15.2	84.0	0.8	-4.70	0.79	0.78	—	4.2	0.004	0.89	0.0	0.05	13.33	0.01	2.176	17.27	0.08	12.7	87.2	0.1	-0.99	0.81	0.78	0.76	—	16292	2099	13	0	261	0	0	logfile
✔	7M64	23688	2023-02-16	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.87	0.0	0.04	11.23	0.00	2.241	5.93	0.00	5.2	94.8	0.0	-3.94	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7ELB	31179	2023-02-27	2021-04-09	4.1	4.43	—	4.1	0.002	0.59	0.0	0.04	13.34	0.00	2.021	9.17	2.07	8.6	91.4	0.0	-3.36	0.80	0.69	—	4.1	0.003	0.76	0.0	0.04	13.20	0.00	2.129	14.42	0.03	9.4	90.5	0.0	-1.36	1.50	0.83	0.74	—	31012	3972	8	0	10	0	0	logfile
✔	7EoR	31228	2023-02-24	2021-04-22	4.0	4.40	—	4.1	0.002	0.42	0.0	0.04	9.09	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.004	0.76	0.0	0.05	13.42	0.00	2.112	16.82	0.19	6.3	93.7	0.0	-0.91	2.23	0.88	0.82	—	24204	3030	8	0	16	0	0	logfile
✔	7MJP	23881	2023-02-21	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.59	0.0	0.04	5.47	0.00	2.285	0.87	0.00	6.8	93.2	0.0	-0.36	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	7EoQ	31227	2023-02-25	2021-04-22	4.1	4.43	—	4.1	0.002	0.46	0.0	0.04	10.21	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.59	0.0	0.04	11.26	0.00	2.196	13.19	0.00	6.8	93.2	0.0	-0.65	1.22	0.89	0.79	—	24742	3144	8	0	10	0	0	logfile
✔	6KS8	0760	2023-02-23	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	7PEY	13361	2023-02-21	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.92	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.005	0.68	0.0	0.04	29.92	0.00	2.127	22.29	0.00	3.1	96.9	0.0	1.41	1.31	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	7MR1	23953	2023-02-22	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.72	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.68	0.0	0.04	14.81	0.00	2.159	12.60	0.00	7.5	92.4	0.0	-0.59	0.33	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	7D46	30571	2023-02-25	2020-09-22	4.0	4.10	—	4.1	0.008	0.93	0.0	0.05	15.19	0.00	2.116	18.69	0.42	17.5	82.4	0.1	-5.10	0.77	0.82	—	4.1	0.004	0.75	0.0	0.05	16.77	0.00	2.095	15.17	0.77	9.7	90.3	0.0	-1.88	1.58	0.76	0.81	—	26636	3481	10	0	0	0	0	logfile
✘	6QEM	4538	2023-02-24	2019-01-08	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65750	4104	24	26	16	0	32652	logfile
✔	7JW0	22512	2023-02-25	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.63	0.0	0.05	9.70	0.00	2.194	4.75	0.00	2.7	97.3	0.0	0.52	1.28	0.84	0.78	—	26251	4314	27	0	69	0	0	logfile
✔	6B3o	7040	2023-02-18	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.285	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.005	0.75	0.0	0.04	14.24	0.00	2.119	10.89	0.00	4.7	95.0	0.3	0.76	1.67	0.71	0.77	—	7980	1032	3	0	0	0	0	logfile
✔	7EoU	31231	2023-02-25	2021-04-22	4.3	4.50	—	4.2	0.002	0.43	0.0	0.04	8.92	0.00	2.243	9.12	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.60	0.0	0.04	11.17	0.00	2.074	13.71	0.00	5.3	94.6	0.1	-0.18	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile
✔	6DVZ	8921	2023-02-23	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.81	0.0	0.04	13.96	0.00	1.621	12.77	0.00	13.5	86.1	0.4	-2.24	0.88	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	6ZGD	11202	2023-02-19	2020-06-18	4.1	4.30	3.99	4.2	0.006	0.62	0.0	0.05	10.93	0.01	2.137	10.94	0.61	4.6	95.4	0.0	-1.11	0.74	0.82	—	4.2	0.003	0.62	0.0	0.05	11.91	0.01	2.177	8.26	0.00	2.3	97.7	0.0	-0.73	1.00	0.70	0.81	—	10175	1440	5	0	0	0	0	logfile
✔	7R15	14231	2023-02-24	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.53	0.0	0.04	13.81	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.003	0.56	0.0	0.04	14.10	0.00	2.141	11.06	0.08	4.9	95.1	0.0	-0.81	0.35	0.85	0.83	—	24100	3000	9	0	43	0	0	logfile
✔	6XGC	22180	2023-02-22	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.68	0.0	0.04	11.21	0.00	2.210	11.27	0.00	3.3	96.7	0.0	-0.05	1.32	0.81	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	6PWX	20514	2023-02-25	2019-07-23	4.2	4.53	—	4.2	0.003	0.59	0.0	0.04	27.24	0.00	2.098	13.58	3.58	4.5	95.5	0.0	-1.76	0.89	0.85	—	4.2	0.004	0.67	0.0	0.04	26.63	0.00	2.093	18.73	0.00	4.1	95.9	0.0	0.20	0.74	0.90	0.86	—	14411	1074	11	292	0	0	0	logfile

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