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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6S6T | 10105 | 2023-04-20 | 2019-07-03 | 4.1 | 4.22 | 4.17 | 4.1 | 0.024 | 0.98 | 0.0 | 0.08 | 12.90 | 0.00 | 1.163 | 8.26 | 0.02 | 5.6 | 94.4 | 0.0 | -3.19 | 0.74 | 0.83 | — | 4.1 | 0.003 | 0.82 | 0.0 | 0.05 | 13.22 | 0.00 | 1.783 | 9.34 | 0.05 | 5.4 | 94.6 | 0.0 | -1.22 | 1.53 | 0.74 | 0.83 | — | 56543 | 7304 | 14 | 0 | 17 | 0 | 0 | logfile |
✔ | 7Z4E | 14494 | 2023-04-24 | 2022-03-03 | 4.14 | 5.32 | 4.15 | 4.2 | 0.004 | 0.55 | 0.0 | 0.04 | 15.77 | 0.00 | 2.196 | 9.63 | 1.64 | 2.0 | 98.0 | 0.0 | 0.67 | 0.88 | 0.76 | — | 4.3 | 0.004 | 0.61 | 0.0 | 0.04 | 16.22 | 0.00 | 2.159 | 18.25 | 0.00 | 3.5 | 96.5 | 0.0 | 0.86 | 3.44 | 0.90 | 0.81 | — | 14069 | 1357 | 4 | 142 | 0 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2023-04-21 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 24.88 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.11 | 0.00 | 2.070 | 24.58 | 0.00 | 17.2 | 82.7 | 0.1 | -3.48 | 1.39 | 0.74 | 0.72 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PM4 | 20386 | 2023-04-23 | 2019-07-01 | 4.0 | 5.19 | — | 4.0 | 0.007 | 0.96 | 0.0 | 0.05 | 10.22 | 0.01 | 2.236 | 7.62 | 0.00 | 9.9 | 90.1 | 0.0 | -4.33 | 0.76 | 0.85 | — | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.171 | 18.81 | 0.27 | 6.3 | 93.7 | 0.0 | -1.27 | 1.21 | 0.77 | 0.85 | — | 14055 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7PH5 | 13407 | 2023-04-22 | 2021-08-16 | 4.0 | 4.33 | 4.10 | 4.2 | 0.007 | 0.78 | 0.0 | 0.04 | 27.45 | 0.01 | 0.679 | 13.94 | 0.42 | 3.7 | 96.3 | 0.0 | 0.43 | 0.72 | 0.65 | — | 4.2 | 0.006 | 0.63 | 0.0 | 0.03 | 27.57 | 0.00 | 1.857 | 44.35 | 0.98 | 5.4 | 94.6 | 0.0 | 1.19 | 2.40 | 0.82 | 0.86 | — | 13483 | 856 | 11 | 290 | 0 | 0 | 713 | logfile |
✘ | 7XVE | 33484 | 2023-04-22 | 2022-05-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13659 | 1569 | 8 | 0 | 42 | 0 | 0 | logfile |
✘ | 8DK2 | 27481 | 2023-04-26 | 2022-07-01 | 4.1 | 4.81 | 4.17 | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 13.54 | 0.00 | 1.988 | 7.72 | 2.88 | 3.7 | 96.3 | 0.0 | 2.05 | 0.84 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23727 | 2840 | 12 | 52 | 4 | 0 | 0 | logfile |
✔ | 7QTJ | 14142 | 2023-04-21 | 2022-01-14 | 4.01 | 4.23 | — | 4.1 | 0.004 | 0.73 | 4.0 | 0.05 | 13.80 | 0.01 | 2.144 | 8.44 | 1.27 | 5.2 | 94.5 | 0.3 | 0.17 | 0.63 | 0.74 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 13.18 | 0.00 | 2.073 | 11.25 | 0.00 | 5.7 | 94.1 | 0.2 | -0.53 | 0.46 | 0.64 | 0.75 | — | 9942 | 1280 | 8 | 0 | 5 | 0 | 0 | logfile |
✘ | 7UK4 | 26574 | 2023-04-23 | 2022-03-31 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14487 | 1856 | 6 | 0 | 2 | 390 | 0 | logfile |
✔ | 7DZY | 30921 | 2023-04-24 | 2021-01-26 | 3.6 | 3.83 | 3.38 | 3.1 | 0.020 | 2.12 | 0.0 | 0.00 | 4.32 | 0.01 | 1.980 | 3.14 | 0.00 | 3.7 | 95.4 | 0.9 | -0.42 | 0.43 | 0.27 | — | 3.3 | 0.003 | 0.83 | 0.0 | 0.00 | 5.21 | 0.00 | 2.105 | 3.02 | 0.00 | 10.5 | 89.3 | 0.2 | -2.46 | 2.13 | 0.71 | 0.70 | — | 18708 | 4677 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MLU | 23910 | 2023-04-26 | 2021-04-29 | 4.1 | 5.27 | — | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 9.48 | 0.01 | 2.271 | 7.00 | 0.21 | 6.4 | 93.6 | 0.0 | -4.41 | 0.72 | 0.65 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 11.77 | 0.00 | 2.148 | 19.54 | 0.00 | 6.7 | 93.3 | 0.0 | -1.63 | 1.32 | 0.75 | 0.78 | — | 21886 | 2746 | 20 | 0 | 5 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2023-04-19 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✔ | 6U5H | 20646 | 2023-04-20 | 2019-08-27 | 4.0 | 3.67 | — | 3.7 | 0.005 | 1.07 | 0.0 | 0.06 | 8.74 | 0.01 | 2.234 | 9.36 | 0.39 | 13.6 | 86.4 | 0.0 | -5.23 | 0.41 | 0.68 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.63 | 0.00 | 2.120 | 18.93 | 0.64 | 10.2 | 89.8 | 0.0 | -4.46 | 0.95 | 0.42 | 0.69 | — | 7326 | 954 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VHJ | 31996 | 2023-04-27 | 2021-09-22 | 4.2 | 4.29 | — | 4.2 | 0.004 | 0.65 | 0.0 | 0.04 | 13.11 | 0.00 | 2.109 | 15.60 | 0.07 | 8.2 | 91.8 | 0.0 | -3.85 | 0.76 | 0.79 | — | 4.2 | 0.004 | 0.67 | 0.0 | 0.04 | 13.43 | 0.00 | 2.034 | 14.92 | 0.00 | 7.7 | 92.3 | 0.0 | -1.62 | 0.56 | 0.76 | 0.79 | — | 25353 | 3257 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MAR | 9062 | 2023-04-25 | 2018-08-28 | 4.5 | 4.66 | 4.48 | 4.4 | 0.007 | 1.04 | 0.0 | 0.07 | 9.48 | 0.01 | 2.031 | 7.46 | 0.26 | 9.8 | 90.0 | 0.2 | -3.41 | 0.78 | 0.81 | — | 4.4 | 0.005 | 0.79 | 0.0 | 0.05 | 11.55 | 0.00 | 2.113 | 16.62 | 0.00 | 10.6 | 89.4 | 0.0 | -2.02 | 1.38 | 0.78 | 0.82 | — | 19211 | 2225 | 47 | 0 | 130 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2023-04-23 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 15.73 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.08 | 0.00 | 1.930 | 17.12 | 0.00 | 9.3 | 90.7 | 0.0 | -1.32 | 1.43 | 0.59 | 0.69 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 3JAU | 6366 | 2023-04-22 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FHD | 29082 | 2023-04-22 | 2022-12-14 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12686 | 1467 | 6 | 0 | 35 | 0 | 0 | logfile |
✘ | 7PXG | 13702 | 2023-04-28 | 2021-10-08 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28664 | 3540 | 8 | 0 | 32 | 0 | 0 | logfile |
✘ | 7Z37 | 14472 | 2023-04-23 | 2022-03-01 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |