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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6QEM | 4538 | 2024-04-08 | 2019-01-08 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65750 | 4104 | 24 | 26 | 16 | 0 | 32652 | logfile |
✔ | 6Fo0 | 4286 | 2024-04-07 | 2018-02-05 | 4.1 | 4.16 | 2.43 | 4.1 | 0.012 | 0.96 | 0.0 | 0.05 | 9.17 | 0.01 | 2.040 | 5.54 | 0.00 | 10.2 | 89.8 | 0.1 | -4.55 | 0.72 | 0.79 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.43 | 0.00 | 1.933 | 9.89 | 0.00 | 5.3 | 94.7 | 0.0 | -0.90 | 2.41 | 0.74 | 0.81 | — | 61356 | 3910 | 24 | 0 | 8 | 0 | 30362 | logfile |
✔ | 8FK7 | 29249 | 2024-04-10 | 2022-12-20 | 4.3 | 4.38 | 4.11 | 4.2 | 0.003 | 0.56 | 0.0 | 0.05 | 11.64 | 0.00 | 2.156 | 10.45 | 0.00 | 0.7 | 99.3 | 0.0 | 2.48 | 0.56 | 0.82 | — | 4.2 | 0.004 | 0.61 | 0.0 | 0.05 | 12.21 | 0.00 | 2.140 | 11.57 | 0.09 | 0.6 | 99.4 | 0.0 | 2.35 | 0.55 | 0.57 | 0.83 | — | 19740 | 2720 | 20 | 0 | 0 | 0 | 0 | logfile |
✘ | 6QEL | 4537 | 2024-04-07 | 2019-01-08 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64816 | 4092 | 24 | 0 | 24 | 0 | 32302 | logfile |
✔ | 5WEo | 8823 | 2024-04-14 | 2017-07-10 | 4.2 | 4.35 | — | 4.2 | 0.009 | 1.05 | 0.0 | 0.06 | 10.71 | 0.01 | 2.188 | 8.90 | 0.24 | 7.3 | 92.7 | 0.1 | -3.69 | 0.80 | 0.72 | — | 4.2 | 0.004 | 0.63 | 0.0 | 0.04 | 11.61 | 0.00 | 2.058 | 10.14 | 0.00 | 6.3 | 93.7 | 0.0 | 0.03 | 1.02 | 0.87 | 0.84 | — | 31168 | 3954 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6YTK | 10917 | 2024-04-17 | 2020-04-24 | 4.07 | 3.60 | 4.00 | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 13.76 | 0.00 | 1.844 | 7.84 | 0.00 | 2.3 | 97.7 | 0.0 | -0.29 | 0.65 | 0.81 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.69 | 0.00 | 2.226 | 7.99 | 0.00 | 2.6 | 97.4 | 0.0 | 2.63 | 0.71 | 0.65 | 0.81 | — | 41620 | 5340 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PVL | 20492 | 2024-04-11 | 2019-07-21 | 4.4 | 4.48 | — | 4.4 | 0.008 | 1.13 | 0.0 | 0.06 | 11.67 | 0.01 | 2.202 | 6.80 | 1.39 | 15.4 | 84.2 | 0.5 | -5.53 | 0.69 | 0.81 | — | 4.4 | 0.004 | 0.80 | 0.0 | 0.04 | 13.07 | 0.00 | 2.117 | 14.31 | 0.00 | 12.9 | 87.0 | 0.2 | -1.11 | 1.46 | 0.69 | 0.81 | — | 21006 | 2576 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 7E0i | 30933 | 2024-04-06 | 2021-01-28 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8033 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✔ | 7KY9 | 23072 | 2024-04-07 | 2020-12-07 | 4.05 | 4.67 | — | 4.5 | 0.004 | 1.14 | 0.0 | 0.05 | 14.17 | 0.00 | 2.206 | 15.79 | 0.00 | 8.3 | 91.7 | 0.0 | -1.25 | 0.67 | 0.71 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 13.18 | 0.00 | 2.129 | 18.03 | 0.00 | 8.5 | 91.5 | 0.0 | -0.96 | 0.47 | 0.69 | 0.74 | — | 10354 | 1275 | 7 | 0 | 14 | 0 | 0 | logfile |
✘ | 6Y5A | 10692 | 2024-04-14 | 2020-02-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32403 | 1940 | 10 | 0 | 5 | 0 | 16272 | logfile |
✔ | 6iGM | 9668 | 2024-04-12 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.78 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | 4.0 | 0.003 | 0.80 | 0.0 | 0.05 | 16.17 | 0.00 | 2.106 | 15.09 | 3.65 | 7.3 | 92.6 | 0.1 | -0.72 | 3.01 | 0.77 | 0.74 | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✔ | 6QNo | 4598 | 2024-04-07 | 2019-02-11 | 4.38 | 4.65 | — | 4.4 | 0.010 | 1.25 | 0.0 | 0.07 | 11.76 | 0.01 | 2.227 | 12.05 | 1.65 | 11.6 | 88.4 | 0.0 | -3.96 | 0.80 | 0.75 | — | 4.4 | 0.003 | 0.70 | 0.0 | 0.04 | 12.21 | 0.00 | 2.145 | 14.48 | 0.26 | 6.8 | 93.2 | 0.0 | -1.56 | 0.75 | 0.79 | 0.74 | — | 10429 | 1332 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 8A64 | 15205 | 2024-04-06 | 2022-06-16 | 4.6 | 7.63 | 4.66 | 4.6 | 0.008 | 0.86 | 0.0 | 0.06 | 10.17 | 0.01 | 2.112 | 20.40 | 0.00 | 5.8 | 94.2 | 0.0 | -1.55 | 0.91 | 0.78 | — | 4.6 | 0.003 | 0.66 | 0.0 | 0.04 | 5.25 | 0.00 | 2.057 | 16.59 | 0.00 | 8.8 | 91.2 | 0.0 | -0.64 | 1.80 | 0.91 | 0.78 | — | 6737 | 1354 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 6SCT | 0126 | 2024-04-16 | 2019-07-25 | 4.69 | 4.38 | 4.14 | 4.0 | 0.004 | 0.75 | 3.0 | 0.04 | 15.13 | 0.00 | 2.104 | 6.11 | 0.27 | 7.5 | 92.4 | 0.1 | -3.74 | 0.81 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40680 | 4947 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iGG | 35432 | 2024-04-09 | 2023-02-20 | 4.09 | 4.18 | 4.06 | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 15.14 | 0.00 | 2.146 | 9.75 | 0.00 | 7.4 | 92.6 | 0.0 | -0.07 | 0.74 | 0.82 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.50 | 0.00 | 2.181 | 10.70 | 0.00 | 7.7 | 92.2 | 0.1 | 0.01 | 0.33 | 0.75 | 0.82 | — | 15998 | 2054 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2024-04-09 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 8.17 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 11.31 | 0.00 | 2.176 | 11.66 | 0.05 | 3.8 | 96.2 | 0.0 | -0.24 | 1.32 | 0.81 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 7WTH | 32786 | 2024-04-05 | 2022-02-04 | 4.3 | 3.63 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 12.97 | 0.01 | 2.169 | 9.08 | 0.85 | 8.0 | 92.0 | 0.0 | -2.03 | 0.69 | 0.70 | — | 4.0 | 0.003 | 0.69 | 0.0 | 0.05 | 13.50 | 0.00 | 2.162 | 9.39 | 0.00 | 9.9 | 90.1 | 0.0 | -2.15 | 0.53 | 0.69 | 0.71 | — | 3257 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5JUY | 8178 | 2024-04-11 | 2016-05-10 | 4.1 | 4.28 | — | 4.1 | 0.009 | 1.23 | 0.0 | 0.05 | 11.01 | 0.00 | 1.447 | 16.11 | 0.71 | 6.6 | 93.0 | 0.4 | -3.18 | 0.76 | 0.55 | — | 4.1 | 0.004 | 0.71 | 0.0 | 0.04 | 12.73 | 0.00 | 2.074 | 14.99 | 0.05 | 6.4 | 93.4 | 0.1 | -1.16 | 2.16 | 0.85 | 0.71 | — | 76058 | 9461 | 32 | 0 | 14 | 0 | 0 | logfile |
✔ | 8AKQ | 15489 | 2024-04-05 | 2022-07-31 | 4.1 | 4.54 | 4.23 | 4.3 | 0.004 | 0.61 | 0.0 | 0.03 | 15.04 | 0.00 | 2.262 | 5.43 | 0.00 | 0.0 | 100.0 | 0.0 | 1.78 | 0.86 | 0.80 | — | 4.3 | 0.005 | 0.72 | 0.0 | 0.03 | 14.67 | 0.00 | 1.883 | 35.62 | 0.00 | 0.5 | 99.5 | 0.0 | 4.28 | 0.80 | 0.88 | 0.83 | — | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 7PDH | 13338 | 2024-04-05 | 2021-08-05 | 4.0 | 3.51 | — | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 14.16 | 0.00 | 2.169 | 14.32 | 0.00 | 5.8 | 94.2 | 0.0 | -1.07 | 0.79 | 0.69 | — | 3.2 | 0.002 | 0.69 | 0.0 | 0.04 | 16.53 | 0.00 | 2.198 | 13.98 | 2.08 | 6.2 | 93.8 | 0.0 | -0.70 | 0.86 | 0.79 | 0.70 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |