Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D8Q	27254	2023-09-28	2022-06-08	4.2	3.68	34.06	3.7	0.012	1.23	0.0	0.05	11.07	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.005	0.74	0.0	0.05	13.10	0.00	2.150	16.15	0.00	4.9	95.1	0.0	-0.72	1.04	0.67	0.76	—	5202	669	6	0	1	0	0	logfile
✔	7N9Q	24259	2023-09-28	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	6VWH	21416	2023-09-29	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.74	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.67	0.0	0.04	12.46	0.00	1.934	10.88	0.00	9.6	90.2	0.2	-1.61	1.52	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✘	7XUL	33473	2023-09-30	2022-05-18	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11082	1380	4	0	10	0	0	logfile
✔	8i0Q	35106	2023-09-29	2023-01-11	4.45	4.83	5.07	4.4	0.003	0.59	0.0	0.04	12.56	0.00	2.167	9.44	0.00	5.1	94.9	0.0	-1.41	0.82	0.81	—	4.4	0.002	0.59	0.0	0.04	13.14	0.00	2.202	8.97	0.00	4.9	95.1	0.0	-0.72	0.47	0.82	0.82	—	8842	1192	8	0	0	0	0	logfile
✔	7N95	24250	2023-09-28	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✘	7WSU	32767	2023-09-29	2022-02-01	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9440	1202	4	0	8	0	0	logfile
✘	6ZZX	11588	2023-09-29	2020-08-05	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56369	4684	68	0	403	99	0	logfile
✔	8F7J	28905	2023-09-27	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	8F7E	28904	2023-09-28	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	4.1	0.004	0.84	0.0	0.05	13.94	0.01	2.044	25.40	0.00	8.3	91.7	0.0	-2.73	2.07	0.59	0.62	—	6642	814	2	0	0	0	0	logfile
✔	7Li7	23362	2023-09-28	2021-01-26	4.1	4.15	—	4.2	0.002	0.61	0.0	0.06	12.21	0.00	2.297	10.16	0.00	4.2	95.8	0.0	-2.70	0.52	0.67	—	4.1	0.003	0.66	0.0	0.04	12.76	0.00	2.215	13.30	0.00	5.8	94.2	0.0	-1.41	0.98	0.66	0.77	—	6177	765	5	0	13	0	0	logfile
✔	6HS7	0264	2023-09-27	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.05	0.00	2.131	10.59	0.07	7.9	92.1	0.0	-2.30	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6HD5	0201	2023-09-29	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7S0E	24788	2023-09-28	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.76	0.0	0.05	12.97	0.01	2.041	19.51	0.00	9.0	90.8	0.2	-1.85	1.18	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	6X66	22071	2023-09-28	2020-05-27	4.2	6.75	—	8.4	0.016	1.73	27.0	0.08	14.04	0.01	2.162	21.79	0.38	12.3	87.7	0.0	-3.77	0.72	0.45	—	4.2	0.004	0.84	0.0	0.05	12.78	0.00	1.926	28.73	0.02	8.6	91.3	0.1	-2.41	2.90	0.78	0.63	—	109070	15548	117	0	0	0	0	logfile
✘	7Li9	23364	2023-09-28	2021-01-26	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6174	767	5	0	13	0	0	logfile
✘	7KHR	22880	2023-09-30	2020-10-21	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61913	8212	44	0	36	0	0	logfile
✔	8i6Q	35203	2023-09-27	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	4.3	0.006	0.81	0.0	0.04	5.74	0.00	1.976	14.06	0.00	12.3	87.4	0.3	-1.52	0.96	0.69	0.83	—	3975	810	4	0	0	0	0	logfile
✔	6HUD	0274	2023-09-27	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.003	0.72	0.0	0.04	12.84	0.00	2.150	15.41	0.61	3.3	96.7	0.0	-5.02	1.49	0.59	0.78	—	2905	385	5	0	0	0	0	logfile
✔	7NCJ	12268	2023-09-30	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.60	1.0	0.05	13.98	0.00	1.897	13.84	0.00	11.2	88.8	0.0	-2.88	1.39	0.69	0.58	—	10860	774	12	0	0	0	5586	logfile

• ← previous
• Page 5 of 206
• next →