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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8D8Q | 27254 | 2023-09-28 | 2022-06-08 | 4.2 | 3.68 | 34.06 | 3.7 | 0.012 | 1.23 | 0.0 | 0.05 | 11.07 | 0.01 | 2.139 | 1.66 | 0.53 | 1.5 | 98.3 | 0.2 | 2.20 | 0.67 | 0.74 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.10 | 0.00 | 2.150 | 16.15 | 0.00 | 4.9 | 95.1 | 0.0 | -0.72 | 1.04 | 0.67 | 0.76 | — | 5202 | 669 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7N9Q | 24259 | 2023-09-28 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.00 | 0.0 | 0.00 | 5.05 | 0.00 | 2.580 | 6.76 | 0.00 | 12.3 | 86.7 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VWH | 21416 | 2023-09-29 | 2020-02-19 | 4.26 | 4.65 | — | 4.3 | 0.006 | 1.06 | 0.0 | 0.06 | 13.74 | 0.01 | 2.223 | 10.17 | 0.82 | 6.7 | 92.5 | 0.8 | -1.73 | 0.69 | 0.57 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.04 | 12.46 | 0.00 | 1.934 | 10.88 | 0.00 | 9.6 | 90.2 | 0.2 | -1.61 | 1.52 | 0.71 | 0.60 | — | 8461 | 539 | 2 | 0 | 0 | 0 | 4139 | logfile |
✘ | 7XUL | 33473 | 2023-09-30 | 2022-05-18 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11082 | 1380 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 8i0Q | 35106 | 2023-09-29 | 2023-01-11 | 4.45 | 4.83 | 5.07 | 4.4 | 0.003 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 2.167 | 9.44 | 0.00 | 5.1 | 94.9 | 0.0 | -1.41 | 0.82 | 0.81 | — | 4.4 | 0.002 | 0.59 | 0.0 | 0.04 | 13.14 | 0.00 | 2.202 | 8.97 | 0.00 | 4.9 | 95.1 | 0.0 | -0.72 | 0.47 | 0.82 | 0.82 | — | 8842 | 1192 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N95 | 24250 | 2023-09-28 | 2021-06-16 | 4.1 | 3.45 | — | 2.1 | 0.002 | 0.74 | 0.0 | 0.00 | 5.05 | 0.00 | 2.573 | 0.10 | 0.00 | 7.1 | 92.3 | 0.6 | -1.14 | 0.78 | 0.70 | — | 2.1 | 0.004 | 1.01 | 0.0 | 0.00 | 4.97 | 0.00 | 2.503 | 6.53 | 0.00 | 18.1 | 81.7 | 0.2 | -3.27 | 1.81 | 0.85 | 0.83 | — | 7299 | 2433 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WSU | 32767 | 2023-09-29 | 2022-02-01 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9440 | 1202 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 6ZZX | 11588 | 2023-09-29 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |
✔ | 8F7J | 28905 | 2023-09-27 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 13.92 | 0.01 | 2.122 | 24.96 | 0.00 | 9.4 | 90.6 | 0.0 | -3.21 | 2.94 | 0.44 | 0.45 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7E | 28904 | 2023-09-28 | 2022-11-18 | 4.13 | 4.21 | 4.35 | 4.1 | 0.005 | 0.98 | 0.0 | 0.05 | 15.17 | 0.01 | 2.266 | 14.09 | 0.53 | 7.4 | 92.6 | 0.0 | -3.38 | 0.55 | 0.57 | — | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 13.94 | 0.01 | 2.044 | 25.40 | 0.00 | 8.3 | 91.7 | 0.0 | -2.73 | 2.07 | 0.59 | 0.62 | — | 6642 | 814 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Li7 | 23362 | 2023-09-28 | 2021-01-26 | 4.1 | 4.15 | — | 4.2 | 0.002 | 0.61 | 0.0 | 0.06 | 12.21 | 0.00 | 2.297 | 10.16 | 0.00 | 4.2 | 95.8 | 0.0 | -2.70 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 12.76 | 0.00 | 2.215 | 13.30 | 0.00 | 5.8 | 94.2 | 0.0 | -1.41 | 0.98 | 0.66 | 0.77 | — | 6177 | 765 | 5 | 0 | 13 | 0 | 0 | logfile |
✔ | 6HS7 | 0264 | 2023-09-27 | 2018-09-28 | 4.6 | 3.02 | 4.27 | 4.3 | 0.006 | 1.00 | 1.0 | 0.05 | 14.59 | 0.01 | 2.156 | 6.39 | 0.04 | 10.5 | 89.5 | 0.0 | -5.02 | 0.77 | 0.69 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 14.05 | 0.00 | 2.131 | 10.59 | 0.07 | 7.9 | 92.1 | 0.0 | -2.30 | 0.94 | 0.79 | 0.71 | — | 52890 | 6905 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-09-29 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S0E | 24788 | 2023-09-28 | 2021-08-30 | 4.9 | 4.98 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 13.44 | 0.01 | 1.886 | 21.60 | 1.22 | 8.1 | 91.3 | 0.7 | -1.76 | 0.77 | 0.67 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.05 | 12.97 | 0.01 | 2.041 | 19.51 | 0.00 | 9.0 | 90.8 | 0.2 | -1.85 | 1.18 | 0.78 | 0.72 | — | 8248 | 1076 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X66 | 22071 | 2023-09-28 | 2020-05-27 | 4.2 | 6.75 | — | 8.4 | 0.016 | 1.73 | 27.0 | 0.08 | 14.04 | 0.01 | 2.162 | 21.79 | 0.38 | 12.3 | 87.7 | 0.0 | -3.77 | 0.72 | 0.45 | — | 4.2 | 0.004 | 0.84 | 0.0 | 0.05 | 12.78 | 0.00 | 1.926 | 28.73 | 0.02 | 8.6 | 91.3 | 0.1 | -2.41 | 2.90 | 0.78 | 0.63 | — | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Li9 | 23364 | 2023-09-28 | 2021-01-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6174 | 767 | 5 | 0 | 13 | 0 | 0 | logfile |
✘ | 7KHR | 22880 | 2023-09-30 | 2020-10-21 | 3.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61913 | 8212 | 44 | 0 | 36 | 0 | 0 | logfile |
✔ | 8i6Q | 35203 | 2023-09-27 | 2023-01-29 | 4.23 | 7.65 | 4.17 | 4.2 | 0.005 | 0.73 | 0.0 | 0.04 | 6.12 | 0.00 | 2.031 | 15.78 | 0.00 | 7.3 | 92.6 | 0.1 | -1.63 | 0.70 | 0.83 | — | 4.3 | 0.006 | 0.81 | 0.0 | 0.04 | 5.74 | 0.00 | 1.976 | 14.06 | 0.00 | 12.3 | 87.4 | 0.3 | -1.52 | 0.96 | 0.69 | 0.83 | — | 3975 | 810 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HUD | 0274 | 2023-09-27 | 2018-10-06 | 4.0 | 4.06 | — | 4.3 | 0.007 | 1.12 | 0.0 | 0.07 | 8.28 | 0.01 | 2.216 | 5.62 | 0.00 | 8.2 | 91.8 | 0.0 | -5.06 | 0.59 | 0.76 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.84 | 0.00 | 2.150 | 15.41 | 0.61 | 3.3 | 96.7 | 0.0 | -5.02 | 1.49 | 0.59 | 0.78 | — | 2905 | 385 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCJ | 12268 | 2023-09-30 | 2021-01-28 | 4.23 | 3.11 | 3.97 | 4.5 | 0.011 | 1.60 | 2.0 | 0.10 | 13.68 | 0.01 | 2.444 | 0.18 | 0.76 | 7.7 | 92.0 | 0.3 | -2.36 | 0.65 | 0.46 | — | 4.5 | 0.003 | 0.60 | 1.0 | 0.05 | 13.98 | 0.00 | 1.897 | 13.84 | 0.00 | 11.2 | 88.8 | 0.0 | -2.88 | 1.39 | 0.69 | 0.58 | — | 10860 | 774 | 12 | 0 | 0 | 0 | 5586 | logfile |