Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S6T	10105	2023-04-20	2019-07-03	4.1	4.22	4.17	4.1	0.024	0.98	0.0	0.08	12.90	0.00	1.163	8.26	0.02	5.6	94.4	0.0	-3.19	0.74	0.83	—	4.1	0.003	0.82	0.0	0.05	13.22	0.00	1.783	9.34	0.05	5.4	94.6	0.0	-1.22	1.53	0.74	0.83	—	56543	7304	14	0	17	0	0	logfile
✔	7Z4E	14494	2023-04-24	2022-03-03	4.14	5.32	4.15	4.2	0.004	0.55	0.0	0.04	15.77	0.00	2.196	9.63	1.64	2.0	98.0	0.0	0.67	0.88	0.76	—	4.3	0.004	0.61	0.0	0.04	16.22	0.00	2.159	18.25	0.00	3.5	96.5	0.0	0.86	3.44	0.90	0.81	—	14069	1357	4	142	0	0	0	logfile
✔	6BX3	7303	2023-04-21	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	6PM4	20386	2023-04-23	2019-07-01	4.0	5.19	—	4.0	0.007	0.96	0.0	0.05	10.22	0.01	2.236	7.62	0.00	9.9	90.1	0.0	-4.33	0.76	0.85	—	3.8	0.003	0.84	0.0	0.04	12.96	0.00	2.171	18.81	0.27	6.3	93.7	0.0	-1.27	1.21	0.77	0.85	—	14055	1735	15	0	15	0	0	logfile
✔	7PH5	13407	2023-04-22	2021-08-16	4.0	4.33	4.10	4.2	0.007	0.78	0.0	0.04	27.45	0.01	0.679	13.94	0.42	3.7	96.3	0.0	0.43	0.72	0.65	—	4.2	0.006	0.63	0.0	0.03	27.57	0.00	1.857	44.35	0.98	5.4	94.6	0.0	1.19	2.40	0.82	0.86	—	13483	856	11	290	0	0	713	logfile
✘	7XVE	33484	2023-04-22	2022-05-21	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13659	1569	8	0	42	0	0	logfile
✘	8DK2	27481	2023-04-26	2022-07-01	4.1	4.81	4.17	4.1	0.002	0.47	0.0	0.04	13.54	0.00	1.988	7.72	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23727	2840	12	52	4	0	0	logfile
✔	7QTJ	14142	2023-04-21	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	13.80	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.003	0.66	0.0	0.04	13.18	0.00	2.073	11.25	0.00	5.7	94.1	0.2	-0.53	0.46	0.64	0.75	—	9942	1280	8	0	5	0	0	logfile
✘	7UK4	26574	2023-04-23	2022-03-31	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14487	1856	6	0	2	390	0	logfile
✔	7DZY	30921	2023-04-24	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.83	0.0	0.00	5.21	0.00	2.105	3.02	0.00	10.5	89.3	0.2	-2.46	2.13	0.71	0.70	—	18708	4677	9	0	0	0	0	logfile
✔	7MLU	23910	2023-04-26	2021-04-29	4.1	5.27	—	4.2	0.004	0.88	0.0	0.05	9.48	0.01	2.271	7.00	0.21	6.4	93.6	0.0	-4.41	0.72	0.65	—	4.2	0.003	0.75	0.0	0.04	11.77	0.00	2.148	19.54	0.00	6.7	93.3	0.0	-1.63	1.32	0.75	0.78	—	21886	2746	20	0	5	0	0	logfile
✘	7UL4	26591	2023-04-19	2022-04-03	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2524	351	3	0	1	4	0	logfile
✔	6U5H	20646	2023-04-20	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.04	15.63	0.00	2.120	18.93	0.64	10.2	89.8	0.0	-4.46	0.95	0.42	0.69	—	7326	954	3	0	0	0	0	logfile
✔	7VHJ	31996	2023-04-27	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.004	0.67	0.0	0.04	13.43	0.00	2.034	14.92	0.00	7.7	92.3	0.0	-1.62	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	6MAR	9062	2023-04-25	2018-08-28	4.5	4.66	4.48	4.4	0.007	1.04	0.0	0.07	9.48	0.01	2.031	7.46	0.26	9.8	90.0	0.2	-3.41	0.78	0.81	—	4.4	0.005	0.79	0.0	0.05	11.55	0.00	2.113	16.62	0.00	10.6	89.4	0.0	-2.02	1.38	0.78	0.82	—	19211	2225	47	0	130	0	0	logfile
✔	6TD6	10464	2023-04-23	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	15.73	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.68	0.0	0.04	14.08	0.00	1.930	17.12	0.00	9.3	90.7	0.0	-1.32	1.43	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✘	8FHD	29082	2023-04-22	2022-12-14	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12686	1467	6	0	35	0	0	logfile
✘	7PXG	13702	2023-04-28	2021-10-08	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28664	3540	8	0	32	0	0	logfile
✘	7Z37	14472	2023-04-23	2022-03-01	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile

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