Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8E6W	27928	2023-08-16	2022-08-23	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21145	2502	13	58	18	0	53	logfile
✘	8G1F	29669	2023-08-22	2023-02-02	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32911	4148	12	0	22	253	0	logfile
✔	6GC4	4380	2023-08-19	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.89	0.0	0.04	16.38	0.01	1.958	31.29	0.04	13.2	86.6	0.2	-3.03	1.05	0.81	0.80	—	80165	2836	26	2705	0	0	0	logfile
✔	7DAG	30625	2023-08-26	2020-10-16	4.37	7.60	—	4.4	0.007	1.47	7.0	0.07	17.81	0.01	1.992	39.98	15.66	10.3	89.6	0.1	-2.99	0.80	0.69	—	4.4	0.005	0.84	0.0	0.05	12.90	0.01	2.053	29.65	0.00	7.6	92.4	0.0	-1.30	1.26	0.82	0.79	—	45976	6069	8	0	0	0	0	logfile
✘	6RH3	4882	2023-08-19	2019-04-18	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26300	3207	9	58	4	0	0	logfile
✘	6VVX	21406	2023-08-20	2020-02-18	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29858	3508	12	128	4	0	0	logfile
✔	6KiW	0693	2023-08-20	2019-07-20	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	22.54	0.01	2.182	4.29	0.00	9.1	90.9	0.0	-3.96	0.70	0.74	—	4.0	0.003	0.64	0.0	0.04	23.87	0.00	2.092	11.42	0.19	6.1	93.9	0.0	-1.01	0.75	0.72	0.76	—	20225	1809	16	289	1	0	0	logfile
✔	7UBB	26437	2023-08-10	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.60	0.0	0.04	14.50	0.00	2.283	8.83	0.00	1.8	98.2	0.0	-1.07	0.80	0.37	0.54	—	7448	896	8	0	0	0	0	logfile
✔	7PYJ	13717	2023-08-20	2021-10-10	4.2	5.28	—	4.4	0.003	0.68	0.0	0.05	14.77	0.00	2.087	11.88	0.04	6.7	93.3	0.1	-1.32	0.90	0.85	—	4.4	0.002	0.61	0.0	0.04	15.11	0.00	2.011	15.17	0.00	6.5	93.5	0.0	-0.50	0.39	0.90	0.85	—	29362	3787	10	68	3	0	0	logfile
✔	7NSU	12577	2023-08-23	2021-03-08	4.7	3.48	4.74	4.1	0.003	0.70	0.0	0.05	14.51	0.00	1.833	11.03	3.66	4.9	95.0	0.1	-1.84	0.58	0.49	—	2.4	0.003	0.65	0.0	0.04	12.78	0.00	1.845	15.02	0.10	4.3	95.7	0.0	-0.92	2.33	0.60	0.53	—	36070	2410	6	0	0	0	17527	logfile
✔	7UoJ	26648	2023-08-19	2022-04-13	4.02	4.32	4.06	4.3	0.006	0.86	0.0	0.06	14.15	0.01	2.198	13.69	0.11	8.9	90.7	0.3	-1.79	0.67	0.71	—	4.3	0.003	0.67	0.0	0.05	14.09	0.00	2.115	10.36	0.04	7.1	92.8	0.2	-1.43	1.43	0.64	0.65	—	26133	3144	54	0	120	0	0	logfile
✘	8F6C	28879	2023-08-15	2022-11-16	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19344	2396	12	0	12	0	0	logfile
✔	6QS4	4621	2023-08-20	2019-02-20	4.2	7.28	4.28	6.5	0.009	1.07	0.0	0.06	10.54	0.01	2.235	8.01	0.10	8.4	91.6	0.0	-3.77	0.83	0.65	—	4.1	0.003	0.66	0.0	0.04	11.96	0.00	2.100	20.27	0.00	5.5	94.5	0.0	0.03	1.07	0.91	0.84	—	28839	3622	13	0	11	0	0	logfile
✘	5ZGB	6929	2023-08-23	2018-03-08	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35011	3102	31	0	215	0	0	logfile
✘	7DXC	30904	2023-08-17	2021-01-18	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22896	2808	8	0	20	0	0	logfile
✔	7o1V	12697	2023-08-23	2021-03-30	4.31	3.92	—	4.2	0.025	2.77	1.0	0.13	20.58	0.02	2.207	10.07	0.07	5.4	94.6	0.1	-1.67	0.59	0.81	—	4.1	0.004	0.70	0.0	0.04	17.93	0.00	1.531	17.83	0.13	4.9	95.1	0.0	-0.19	0.57	0.61	0.83	—	20914	1869	12	0	120	0	0	logfile
✔	6Q2R	20578	2023-08-21	2019-08-08	4.3	4.92	—	4.6	0.004	0.82	0.0	0.05	8.43	0.01	1.384	4.86	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.004	0.74	0.0	0.04	11.38	0.01	2.060	19.20	0.03	7.2	92.8	0.0	-1.75	2.63	0.75	0.73	—	30392	3800	16	0	40	0	0	logfile
✔	6FLP	4274	2023-08-19	2018-01-26	4.1	4.58	4.28	4.2	0.002	0.57	0.0	0.04	12.69	0.00	2.062	8.87	0.04	6.3	93.7	0.1	-3.10	0.85	0.83	—	4.2	0.006	0.79	0.0	0.04	14.90	0.00	2.050	17.44	0.00	11.3	88.6	0.1	-1.72	1.38	0.86	0.86	—	26512	3184	9	80	3	0	0	logfile
✔	6CEB	7463	2023-08-12	2018-02-11	4.7	5.92	—	4.7	0.006	1.02	0.0	0.06	9.64	0.01	1.288	8.80	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.005	0.81	0.0	0.05	11.21	0.00	2.127	25.98	0.00	12.8	87.2	0.0	-2.59	2.07	0.89	0.85	—	11722	1406	20	0	30	0	0	logfile
✔	6CE9	7462	2023-08-12	2018-02-11	4.3	4.83	—	4.4	0.008	1.06	0.0	0.06	10.01	0.01	2.314	7.35	0.00	12.6	87.1	0.3	-3.39	0.86	0.83	—	4.3	0.003	0.73	0.0	0.05	11.45	0.00	2.257	12.57	0.00	8.9	91.1	0.0	-2.20	1.37	0.87	0.83	—	10782	1286	20	0	30	0	0	logfile

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