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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TFN | 25877 | 2024-03-23 | 2022-01-06 | 4.0 | 4.13 | — | 4.0 | 0.004 | 0.72 | 0.0 | 0.06 | 18.09 | 0.01 | 1.966 | 14.51 | 0.10 | 5.9 | 93.9 | 0.2 | -0.97 | 0.78 | 0.79 | — | 4.0 | 0.004 | 0.80 | 0.0 | 0.05 | 15.62 | 0.00 | 1.476 | 13.81 | 2.23 | 5.8 | 94.1 | 0.0 | -0.75 | 0.38 | 0.79 | 0.82 | — | 18692 | 2344 | 31 | 0 | 58 | 0 | 0 | logfile |
✔ | 6UoX | 20834 | 2024-03-14 | 2019-10-15 | 4.02 | 4.28 | — | 4.1 | 0.010 | 1.18 | 1.0 | 0.08 | 14.59 | 0.01 | 2.461 | 0.89 | 0.00 | 8.2 | 91.8 | 0.0 | -4.01 | 0.66 | 0.78 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 12.05 | 0.00 | 2.186 | 8.54 | 0.00 | 6.7 | 93.3 | 0.0 | -1.94 | 0.68 | 0.69 | 0.81 | — | 9138 | 1161 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 8DBQ | 27298 | 2024-03-23 | 2022-06-14 | 4.0 | 4.31 | 3.95 | 4.0 | 0.005 | 0.89 | 1.0 | 0.05 | 14.27 | 0.01 | 1.911 | 2.02 | 1.26 | 1.6 | 98.3 | 0.0 | -0.19 | 0.75 | 0.80 | — | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 15.36 | 0.00 | 1.966 | 11.58 | 1.63 | 2.7 | 97.3 | 0.0 | 0.79 | 1.43 | 0.76 | 0.84 | — | 36737 | 4819 | 28 | 0 | 11 | 0 | 0 | logfile |
✔ | 8GTD | 34250 | 2024-03-21 | 2022-09-08 | 4.7 | 4.27 | 4.25 | 4.2 | 0.014 | 2.16 | 0.0 | 0.00 | 5.49 | 0.01 | 2.285 | 3.73 | 0.00 | 8.4 | 90.0 | 1.6 | 0.41 | 0.50 | 0.44 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.00 | 6.20 | 0.00 | 2.228 | 4.76 | 0.00 | 19.1 | 80.2 | 0.7 | -2.63 | 1.26 | 0.52 | 0.51 | — | 29580 | 7392 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EWP | 31360 | 2024-03-20 | 2021-05-25 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20179 | 1816 | 4 | 0 | 0 | 0 | 6804 | logfile |
✔ | 6UM2 | 20816 | 2024-03-15 | 2019-10-08 | 4.32 | 4.49 | — | 4.3 | 0.013 | 1.78 | 10.0 | 0.09 | 15.41 | 0.01 | 1.505 | 10.33 | 0.41 | 6.7 | 92.9 | 0.4 | -4.93 | 0.73 | 0.67 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.05 | 13.63 | 0.01 | 2.061 | 14.94 | 0.00 | 12.1 | 87.9 | 0.0 | -3.70 | 1.39 | 0.79 | 0.75 | — | 13094 | 1686 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 6FKi | 4272 | 2024-03-24 | 2018-01-24 | 4.3 | 4.39 | 4.31 | 4.3 | 0.015 | 1.42 | 28.0 | 0.09 | 12.07 | 0.01 | 0.201 | 58.71 | 0.15 | 3.9 | 96.0 | 0.1 | -0.17 | 0.63 | 0.65 | — | 4.3 | 0.006 | 0.90 | 10.0 | 0.06 | 13.74 | 0.01 | 1.416 | 23.83 | 0.02 | 4.4 | 95.5 | 0.1 | -0.22 | 1.25 | 0.69 | 0.78 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2024-03-16 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✔ | 7M7G | 23712 | 2024-03-20 | 2021-03-28 | 4.1 | 4.36 | — | 4.2 | 0.012 | 1.67 | 59.0 | 0.10 | 19.69 | 0.01 | 1.751 | 14.96 | 18.86 | 9.1 | 90.9 | 0.0 | -4.21 | 0.69 | 0.51 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 13.46 | 0.00 | 2.083 | 19.78 | 0.00 | 6.0 | 94.0 | 0.1 | -1.44 | 2.54 | 0.82 | 0.76 | — | 26480 | 3557 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2024-03-18 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.91 | 0.0 | 0.04 | 15.60 | 0.00 | 2.000 | 25.15 | 0.03 | 1.7 | 98.2 | 0.1 | 1.85 | 2.38 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✘ | 8APE | 15567 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 6YMX | 10847 | 2024-03-25 | 2020-04-10 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47034 | 5759 | 47 | 0 | 38 | 0 | 0 | logfile |
✔ | 5U0P | 8479 | 2024-03-18 | 2016-11-26 | 4.4 | 4.99 | — | 4.2 | 0.007 | 1.19 | 1.0 | 0.05 | 8.61 | 0.01 | 1.541 | 18.54 | 0.00 | 8.3 | 88.2 | 3.4 | -2.22 | 0.75 | 0.62 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 11.05 | 0.00 | 2.046 | 15.42 | 0.00 | 7.9 | 91.4 | 0.6 | -0.16 | 1.61 | 0.82 | 0.78 | — | 20268 | 2557 | 16 | 0 | 372 | 0 | 0 | logfile |
✔ | 7PXB | 13696 | 2024-03-18 | 2021-10-08 | 4.0 | 3.59 | — | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 11.58 | 0.00 | 2.022 | 8.96 | 2.05 | 3.6 | 96.4 | 0.0 | 1.14 | 0.77 | 0.74 | — | 3.4 | 0.004 | 0.66 | 0.0 | 0.04 | 14.84 | 0.00 | 1.844 | 14.15 | 2.93 | 5.4 | 94.6 | 0.0 | 0.10 | 1.39 | 0.78 | 0.77 | — | 22286 | 2828 | 13 | 0 | 12 | 0 | 0 | logfile |
✔ | 6Uo9 | 20823 | 2024-03-14 | 2019-10-14 | 4.8 | 5.30 | — | 4.9 | 0.006 | 1.38 | 1.0 | 0.07 | 14.25 | 0.01 | 2.227 | 6.41 | 1.07 | 8.0 | 92.0 | 0.0 | -3.80 | 0.81 | 0.80 | — | 4.9 | 0.004 | 0.78 | 0.0 | 0.04 | 13.12 | 0.00 | 2.033 | 14.98 | 0.00 | 7.5 | 92.5 | 0.0 | -0.25 | 1.06 | 0.81 | 0.82 | — | 9915 | 1365 | 9 | 0 | 14 | 0 | 0 | logfile |
✘ | 7ZDF | 14644 | 2024-03-14 | 2022-03-29 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9039 | 1159 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 6VQi | 21351 | 2024-03-10 | 2020-02-05 | 4.3 | 4.89 | — | 4.2 | 0.005 | 1.14 | 0.0 | 0.05 | 3.90 | 0.01 | 2.327 | 1.95 | 0.00 | 1.3 | 98.2 | 0.5 | 2.16 | 0.56 | 0.73 | — | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 4.43 | 0.00 | 2.212 | 4.17 | 0.00 | 6.5 | 93.4 | 0.1 | 1.98 | 0.77 | 0.56 | 0.74 | — | 5278 | 1062 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z37 | 14472 | 2024-03-16 | 2022-03-01 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 7BPB | 30150 | 2024-03-23 | 2020-03-22 | 4.3 | 4.65 | — | 4.6 | 0.007 | 1.12 | 0.0 | 0.07 | 16.10 | 0.01 | 1.956 | 8.45 | 0.05 | 6.1 | 93.8 | 0.1 | -4.20 | 0.71 | 0.80 | — | 4.6 | 0.003 | 0.70 | 0.0 | 0.05 | 15.42 | 0.01 | 2.035 | 14.50 | 0.05 | 4.8 | 95.2 | 0.0 | -1.08 | 1.67 | 0.74 | 0.81 | — | 35238 | 4440 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7WRJ | 32728 | 2024-03-10 | 2022-01-26 | 4.08 | 4.24 | — | 4.2 | 0.009 | 1.32 | 0.0 | 0.07 | 14.01 | 0.01 | 2.255 | 12.35 | 0.55 | 11.5 | 87.8 | 0.7 | -2.57 | 0.62 | 0.70 | — | 4.1 | 0.004 | 0.82 | 0.0 | 0.05 | 13.74 | 0.01 | 2.131 | 21.31 | 0.00 | 9.5 | 90.0 | 0.5 | -2.20 | 1.65 | 0.65 | 0.75 | — | 3289 | 418 | 4 | 0 | 2 | 0 | 0 | logfile |