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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6X66 | 22071 | 2024-03-11 | 2020-05-27 | 4.2 | 6.75 | — | 8.4 | 0.016 | 1.73 | 27.0 | 0.08 | 14.04 | 0.01 | 2.162 | 21.79 | 0.38 | 12.3 | 87.7 | 0.0 | -3.77 | 0.72 | 0.45 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 12.91 | 0.01 | 1.987 | 32.05 | 0.00 | 9.4 | 90.6 | 0.1 | -2.61 | 2.77 | 0.77 | 0.73 | — | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NG4 | 12307 | 2024-03-16 | 2021-02-08 | 4.4 | 5.07 | 4.36 | 3.9 | 0.010 | 1.37 | 0.0 | 0.06 | 13.48 | 0.01 | 1.977 | 6.38 | 0.12 | 7.3 | 92.7 | 0.0 | -2.19 | 0.89 | 0.78 | — | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 12.98 | 0.00 | 1.735 | 13.20 | 0.00 | 5.3 | 94.7 | 0.0 | -1.11 | 0.96 | 0.88 | 0.80 | — | 74624 | 4656 | 13 | 0 | 31 | 0 | 37485 | logfile |
✔ | 6X64 | 22069 | 2024-03-16 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 7LFH | 23302 | 2024-03-17 | 2021-01-17 | 4.2 | 3.38 | — | 4.1 | 0.004 | 0.95 | 12.0 | 0.05 | 13.99 | 0.01 | 2.078 | 29.03 | 0.00 | 13.1 | 86.8 | 0.1 | -2.88 | 0.61 | 0.49 | — | 4.1 | 0.005 | 0.91 | 0.0 | 0.05 | 14.10 | 0.00 | 2.079 | 29.43 | 0.10 | 14.5 | 85.5 | 0.0 | -2.48 | 1.02 | 0.66 | 0.68 | — | 76884 | 9672 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S0E | 24788 | 2024-03-11 | 2021-08-30 | 4.9 | 4.98 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 13.44 | 0.01 | 1.886 | 21.60 | 1.22 | 8.1 | 91.3 | 0.7 | -1.76 | 0.77 | 0.67 | — | 4.8 | 0.004 | 0.79 | 0.0 | 0.05 | 12.96 | 0.01 | 2.080 | 22.56 | 0.00 | 10.5 | 89.3 | 0.2 | -1.99 | 1.17 | 0.78 | 0.73 | — | 8248 | 1076 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o8Y | 0658 | 2024-03-18 | 2019-03-12 | 4.14 | 4.86 | — | 4.1 | 0.007 | 1.05 | 0.0 | 0.05 | 23.44 | 0.01 | 2.135 | 9.41 | 0.39 | 14.8 | 85.0 | 0.2 | -4.58 | 0.89 | 0.82 | — | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 23.36 | 0.01 | 1.908 | 23.46 | 0.09 | 12.9 | 87.0 | 0.1 | -2.90 | 1.65 | 0.90 | 0.83 | — | 138210 | 5209 | 53 | 4541 | 4 | 0 | 0 | logfile |
✔ | 7PEA | 13350 | 2024-03-11 | 2021-08-09 | 4.07 | 4.50 | — | 4.2 | 0.002 | 0.47 | 0.0 | 0.04 | 14.26 | 0.00 | 2.239 | 3.98 | 4.24 | 4.7 | 95.3 | 0.0 | -2.53 | 0.84 | 0.72 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 13.47 | 0.00 | 2.108 | 10.45 | 0.02 | 3.1 | 96.8 | 0.0 | 0.87 | 1.48 | 0.86 | 0.77 | — | 58252 | 7222 | 10 | 0 | 114 | 0 | 0 | logfile |
✔ | 6RES | 4855 | 2024-03-10 | 2019-04-12 | 4.3 | 4.30 | — | 4.2 | 0.006 | 0.95 | 0.0 | 0.06 | 15.08 | 0.01 | 1.680 | 8.22 | 0.41 | 6.0 | 93.9 | 0.1 | -5.14 | 0.64 | 0.77 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 14.32 | 0.00 | 1.912 | 14.89 | 0.02 | 5.2 | 94.7 | 0.1 | -0.99 | 1.24 | 0.64 | 0.77 | — | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✘ | 7QWQ | 14191 | 2024-03-21 | 2022-01-25 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143809 | 7312 | 59 | 3936 | 158 | 0 | 0 | logfile |
✔ | 8FEJ | 29029 | 2024-03-15 | 2022-12-06 | 4.64 | 5.33 | 4.68 | 4.6 | 0.001 | 0.37 | 0.0 | 0.04 | 13.97 | 0.00 | 2.253 | 6.27 | 4.30 | 2.9 | 96.9 | 0.2 | 0.48 | 0.88 | 0.69 | — | 4.6 | 0.002 | 0.54 | 0.0 | 0.04 | 12.30 | 0.00 | 2.260 | 9.45 | 0.00 | 5.5 | 94.3 | 0.2 | -0.55 | 1.30 | 0.91 | 0.74 | — | 10464 | 1368 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8APD | 15566 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✔ | 7PHG | 13415 | 2024-03-11 | 2021-08-17 | 4.3 | 4.13 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 13.71 | 0.00 | 1.916 | 18.40 | 0.00 | 11.9 | 88.1 | 0.0 | -3.68 | 0.78 | 0.67 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.40 | 0.00 | 1.919 | 21.02 | 0.00 | 13.1 | 86.9 | 0.0 | -3.80 | 1.25 | 0.78 | 0.67 | — | 6469 | 427 | 3 | 0 | 0 | 0 | 3160 | logfile |
✔ | 7SAM | 24952 | 2024-03-10 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 23.50 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 28.37 | 0.01 | 1.818 | 83.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.72 | 0.95 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6GJ3 | 0010 | 2024-03-17 | 2018-05-15 | 4.3 | 4.02 | — | 3.9 | 0.008 | 1.19 | 0.0 | 0.06 | 10.34 | 0.01 | 2.248 | 5.14 | 0.37 | 13.5 | 86.2 | 0.3 | -4.76 | 0.71 | 0.78 | — | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 12.15 | 0.01 | 2.272 | 9.39 | 0.00 | 9.3 | 90.7 | 0.0 | -1.52 | 0.73 | 0.71 | 0.77 | — | 17405 | 2194 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZDL | 14653 | 2024-03-14 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9029 | 1152 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 8BER | 16009 | 2024-03-10 | 2022-10-21 | 4.0 | 4.97 | 1.55 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 12.68 | 0.00 | 2.214 | 12.92 | 0.00 | 4.0 | 96.0 | 0.0 | 2.47 | 0.55 | 0.79 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 14.36 | 0.00 | 2.165 | 11.56 | 0.82 | 4.5 | 95.5 | 0.0 | 3.15 | 1.18 | 0.54 | 0.81 | — | 3309 | 414 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T64 | 25709 | 2024-03-17 | 2021-12-13 | 4.0 | 4.36 | 4.08 | 3.9 | 0.002 | 0.64 | 0.0 | 0.04 | 14.83 | 0.00 | 2.175 | 5.90 | 0.00 | 6.1 | 93.5 | 0.4 | -0.38 | 0.76 | 0.70 | — | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.24 | 0.00 | 2.131 | 10.40 | 1.81 | 8.2 | 91.6 | 0.2 | -0.09 | 0.51 | 0.77 | 0.73 | — | 134196 | 17416 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 8APJ | 15572 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8SA3 | 40263 | 2024-03-14 | 2023-03-31 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✔ | 7ZKB | 14761 | 2024-03-14 | 2022-04-12 | 4.7 | 4.80 | 4.47 | 4.7 | 0.008 | 1.05 | 2.0 | 0.06 | 15.45 | 0.00 | 2.224 | 16.22 | 0.21 | 6.9 | 93.1 | 0.0 | 0.07 | 0.56 | 0.74 | — | 4.7 | 0.004 | 0.68 | 0.0 | 0.04 | 14.98 | 0.00 | 2.122 | 14.62 | 0.00 | 7.0 | 93.0 | 0.0 | 0.01 | 0.55 | 0.56 | 0.76 | — | 9043 | 1158 | 1 | 0 | 1 | 0 | 0 | logfile |