Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H8A	34540	2023-02-18	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.003	0.66	0.0	0.04	15.54	0.00	2.234	6.27	0.22	11.9	87.9	0.2	-2.50	1.14	0.77	0.89	3.84	8454	1039	2	0	0	0	0	logfile
✔	8H77	34519	2023-02-21	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.57	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.004	0.66	0.0	0.04	17.53	0.00	0.978	10.13	0.29	4.2	95.8	0.0	-0.93	0.69	0.69	0.77	2.13	15726	1930	8	0	4	0	0	logfile
✔	8H1T	34431	2023-02-22	2022-10-04	3.0	3.40	1.70	3.2	0.003	0.53	0.0	0.04	24.67	0.00	1.336	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.004	0.65	0.0	0.04	26.64	0.00	2.181	11.75	2.94	3.4	96.6	0.0	1.61	0.68	0.76	0.74	1.42	17365	1323	14	334	0	0	0	logfile
✔	8H16	34426	2023-02-24	2022-09-30	3.35534	3.37	3.29	3.4	0.006	0.84	0.0	0.06	13.42	0.01	2.223	3.00	0.00	3.0	97.0	0.0	-0.98	0.75	0.83	3.12	3.4	0.004	0.59	0.0	0.05	14.71	0.00	2.162	4.71	0.33	3.6	96.4	0.0	-0.22	1.40	0.76	0.85	2.76	21934	2754	6	0	32	0	0	logfile
✔	8H15	34425	2023-02-24	2022-09-30	3.14182	3.18	3.11	3.2	0.011	1.02	1.0	0.07	13.97	0.01	2.182	2.84	0.00	5.5	94.5	0.0	-1.79	0.75	0.83	3.70	3.2	0.003	0.56	0.0	0.04	15.01	0.00	2.114	4.04	0.20	3.5	96.5	0.0	0.04	1.39	0.76	0.83	2.83	22813	2888	6	0	18	0	0	logfile
✔	8H14	34424	2023-02-25	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.93	6.0	0.06	13.70	0.01	2.177	2.50	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	3.4	0.004	0.62	0.0	0.05	14.61	0.00	2.194	3.77	0.19	3.2	96.8	0.0	-0.38	0.40	0.80	0.88	2.83	24750	3087	6	0	45	0	0	logfile
✔	8H13	34423	2023-02-24	2022-09-30	4.05	4.03	4.00	4.0	0.004	0.84	0.0	0.05	14.07	0.01	2.254	3.85	0.83	5.0	95.0	0.0	-1.27	0.76	0.79	—	4.0	0.003	0.60	0.0	0.04	13.84	0.00	2.166	7.60	0.00	4.4	95.6	0.0	-0.22	0.42	0.76	0.78	—	22113	2793	6	0	21	0	0	logfile
✔	8H12	34422	2023-02-24	2022-09-30	3.44681	3.52	3.40	3.5	0.006	0.78	0.0	0.06	13.75	0.01	2.253	2.68	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.002	0.54	0.0	0.05	15.23	0.00	2.086	4.73	0.27	2.9	97.1	0.0	-0.63	0.33	0.72	0.85	2.89	24221	3022	9	0	45	0	0	logfile
✔	8H11	34421	2023-02-24	2022-09-30	2.72	2.91	2.73	2.9	0.006	0.81	0.0	0.05	12.33	0.01	2.250	2.67	0.04	3.4	96.6	0.0	-1.16	0.79	0.85	3.06	2.9	0.004	0.55	0.0	0.05	14.37	0.00	2.153	4.23	1.29	3.5	96.5	0.0	0.16	0.32	0.79	0.86	2.80	23566	2945	7	0	39	0	0	logfile
✔	8H10	34420	2023-02-25	2022-09-30	2.99	3.22	3.06	3.2	0.008	0.88	0.0	0.05	12.77	0.01	2.304	2.85	0.64	3.1	96.9	0.0	-1.07	0.81	0.85	2.83	3.2	0.002	0.52	0.0	0.04	14.42	0.00	2.227	4.79	1.54	3.0	97.0	0.0	0.06	0.41	0.81	0.86	2.84	24882	3078	9	0	54	0	0	logfile
✔	8H0Z	34419	2023-02-25	2022-09-30	2.99	3.23	3.00	3.2	0.008	0.90	0.0	0.06	12.37	0.01	2.229	3.18	0.00	4.5	95.5	0.0	-1.47	0.81	0.85	3.39	3.2	0.002	0.56	0.0	0.04	13.91	0.00	2.184	4.92	1.45	3.6	96.4	0.0	-0.49	0.33	0.81	0.86	2.99	25047	3102	9	0	51	0	0	logfile
✔	8H0Y	34418	2023-02-25	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.82	0.0	0.06	13.16	0.01	2.274	2.60	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	3.0	0.004	0.56	0.0	0.05	14.85	0.00	2.210	4.46	1.64	3.4	96.6	0.0	-0.25	1.14	0.82	0.88	3.38	24999	3094	6	0	52	0	0	logfile
✔	8H0X	34417	2023-02-25	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.90	0.0	0.06	12.63	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	2.7	0.003	0.59	0.0	0.05	14.27	0.00	2.201	3.53	1.63	3.1	96.9	0.0	0.10	1.17	0.82	0.88	3.78	25122	3117	6	0	48	0	0	logfile
✔	8GZ3	34389	2023-02-18	2022-09-24	3.3	3.13	—	3.1	0.012	1.44	3.0	0.10	13.66	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.004	0.68	0.0	0.04	14.05	0.00	2.134	5.74	0.47	1.5	98.5	0.0	0.66	1.19	0.71	0.83	3.17	8542	789	7	0	434	1	0	logfile
✔	8GXZ	34366	2023-02-27	2022-09-21	3.1	2.45	3.10	3.0	0.006	0.54	0.0	0.04	13.81	0.00	1.826	6.59	0.00	4.2	95.8	0.0	0.46	0.54	0.74	3.39	3.0	0.005	0.66	0.0	0.05	16.70	0.01	1.903	8.11	0.26	3.2	96.8	0.0	0.03	2.14	0.68	0.83	3.06	29499	3788	14	0	3	0	0	logfile
✔	8GXY	34365	2023-02-27	2022-09-21	2.8	2.43	2.80	2.7	0.005	0.52	0.0	0.04	14.57	0.00	1.951	5.20	0.03	2.1	97.9	0.0	0.94	0.63	0.82	4.11	2.6	0.005	0.65	0.0	0.05	18.00	0.01	2.050	7.25	2.30	2.3	97.7	0.0	0.97	0.73	0.72	0.87	3.66	29472	3788	14	0	2	0	0	logfile
✔	8GXX	34364	2023-02-27	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.56	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.59	0.0	0.04	16.97	0.00	1.956	7.51	2.76	2.1	97.9	0.0	0.94	1.10	0.74	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	8GXW	34363	2023-02-27	2022-09-21	2.7	2.30	2.77	2.5	0.006	0.55	0.0	0.04	13.98	0.00	1.843	5.14	0.00	2.4	97.6	0.0	0.98	0.66	0.81	3.89	2.5	0.003	0.56	0.0	0.04	17.37	0.00	1.981	6.86	2.34	1.8	98.2	0.0	1.17	1.11	0.71	0.84	3.61	29530	3788	15	0	4	0	0	logfile
✔	8GXU	34362	2023-02-27	2022-09-21	2.5	2.02	2.54	2.3	0.007	0.57	0.0	0.05	14.47	0.01	1.855	4.64	0.00	3.2	96.8	0.0	0.82	0.64	0.79	4.52	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.124	6.63	1.27	2.3	97.7	0.0	1.06	1.36	0.70	0.83	4.00	29503	3788	15	0	3	0	0	logfile
✔	8GWo	34318	2023-02-24	2022-09-17	3.8	4.21	3.91	4.0	0.008	0.82	0.0	0.05	15.18	0.01	1.755	15.71	0.66	8.8	91.1	0.1	-2.55	0.81	0.82	1.08	4.0	0.003	0.64	0.0	0.04	15.57	0.00	2.121	12.30	0.35	7.3	92.7	0.0	-1.67	0.50	0.82	0.82	0.97	21880	2655	12	53	9	0	0	logfile

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