Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Soi	40658	2023-08-16	2023-04-28	4.2	3.78	—	3.6	0.003	0.60	0.0	0.04	15.47	0.00	2.090	9.52	0.09	3.2	96.7	0.1	1.61	0.66	0.64	—	3.6	0.003	0.55	0.0	0.04	14.25	0.00	2.009	9.08	0.00	3.7	96.1	0.2	1.92	0.53	0.66	0.63	—	20708	1276	4	0	0	0	10465	logfile
✔	8SLY	40583	2023-08-15	2023-04-24	3.32	3.53	3.22	3.4	0.006	0.66	0.0	0.05	14.78	0.00	2.205	6.02	0.00	1.7	98.3	0.0	1.34	0.75	0.86	2.93	3.4	0.002	0.52	0.0	0.04	14.53	0.00	2.241	5.86	0.00	1.9	98.1	0.0	2.41	0.38	0.76	0.89	2.88	18257	2364	12	0	13	4	0	logfile
✔	8SLX	40582	2023-08-15	2023-04-24	3.23	3.68	3.11	3.5	0.004	0.48	0.0	0.04	13.37	0.00	2.353	5.45	0.00	1.2	98.8	0.0	1.44	0.76	0.83	3.04	3.5	0.002	0.50	0.0	0.04	14.18	0.00	2.329	5.45	0.06	2.2	97.8	0.0	2.34	0.38	0.76	0.85	2.39	17885	2376	10	0	5	4	0	logfile
✘	8SL0	40570	2023-08-09	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✔	8SK7	40557	2023-08-18	2023-04-18	2.93	3.62	2.93	3.4	0.004	0.53	0.0	0.05	10.07	0.00	2.303	1.32	0.45	1.3	98.7	0.0	1.18	0.78	0.74	4.01	3.4	0.002	0.53	0.0	0.04	13.91	0.00	2.097	4.51	1.19	2.9	97.1	0.0	0.81	2.19	0.81	0.84	3.78	25404	1653	18	0	27	0	12267	logfile
✔	8SiK	40508	2023-08-14	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.002	0.47	0.0	0.04	16.00	0.00	2.245	6.49	1.51	2.2	97.8	0.0	2.72	0.22	0.64	0.84	3.66	15832	1984	12	0	8	0	0	logfile
✔	8SiB	40505	2023-08-09	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.89	0.0	0.05	15.64	0.00	2.221	13.44	2.58	13.3	86.4	0.2	-1.48	2.04	0.70	0.82	2.65	3544	454	1	0	0	0	0	logfile
✔	8SiA	40504	2023-08-19	2023-04-14	2.91	3.13	3.00	3.1	0.013	1.25	0.0	0.09	18.89	0.01	1.993	5.03	0.72	14.5	85.0	0.5	-6.42	0.61	0.69	3.40	3.1	0.004	0.74	2.0	0.10	18.01	0.00	2.007	20.18	1.79	12.1	87.8	0.2	-2.66	1.22	0.63	0.77	2.89	74681	4420	8	0	65	0	36144	logfile
✔	8Si8	40502	2023-08-19	2023-04-14	2.99	3.23	3.11	3.2	0.014	1.31	0.0	0.06	18.72	0.01	1.990	4.28	0.41	12.7	86.6	0.7	-5.92	0.66	0.78	3.56	3.2	0.005	0.70	0.0	0.05	17.83	0.00	1.973	17.48	2.07	11.0	88.9	0.1	-1.86	1.27	0.68	0.84	2.13	74753	4420	8	0	65	0	36144	logfile
✔	8Si7	40501	2023-08-19	2023-04-14	2.59	2.88	2.81	3.0	0.015	1.22	0.0	0.06	18.76	0.01	1.983	3.79	0.20	9.1	90.2	0.7	-4.99	0.58	0.76	4.17	3.0	0.003	0.62	0.0	0.04	18.07	0.00	1.897	14.50	0.94	8.5	91.0	0.4	-0.49	0.86	0.60	0.83	3.57	74897	4420	12	0	65	156	36136	logfile
✔	8Si6	40500	2023-08-19	2023-04-14	2.44	2.67	2.66	2.8	0.012	1.10	0.0	0.05	19.19	0.01	2.047	3.07	0.00	7.5	91.8	0.7	-5.09	0.45	0.52	1.04	2.7	0.003	0.70	0.0	0.04	18.19	0.00	1.988	12.77	1.30	8.1	91.6	0.3	-0.31	1.80	0.62	0.83	3.28	74889	4428	8	0	65	0	36240	logfile
✔	8Si5	40499	2023-08-19	2023-04-14	2.17	2.32	2.30	2.3	0.015	1.22	0.0	0.07	17.88	0.01	2.001	3.41	0.31	7.7	92.1	0.2	-3.02	0.60	0.78	4.56	2.3	0.005	0.69	0.0	0.05	17.46	0.00	1.857	13.97	0.69	5.6	94.4	0.0	-0.20	0.67	0.65	0.86	3.67	74865	4388	12	0	65	404	35916	logfile
✔	8Si4	40498	2023-08-19	2023-04-14	2.46	2.61	2.60	2.7	0.014	1.27	0.0	0.07	19.03	0.01	2.040	4.33	0.82	11.4	87.9	0.7	-5.18	0.58	0.72	3.54	2.7	0.005	0.66	0.0	0.05	18.64	0.00	1.865	16.38	1.23	8.9	90.8	0.3	-1.65	0.84	0.63	0.76	2.78	75145	4420	12	0	65	236	36148	logfile
✔	8Si3	40497	2023-08-19	2023-04-14	2.61	2.82	2.75	2.9	0.009	1.18	0.0	0.05	18.76	0.01	1.981	4.43	0.41	8.7	90.7	0.6	-5.14	0.58	0.74	4.13	2.9	0.004	0.62	0.0	0.04	17.63	0.00	1.901	14.57	1.53	7.6	92.3	0.2	-0.58	1.44	0.63	0.83	3.49	74749	4420	12	0	61	160	36136	logfile
✔	8Si2	40496	2023-08-24	2023-04-14	2.19	2.32	2.33	2.4	0.012	1.13	0.0	0.06	19.78	0.01	2.026	2.74	0.20	8.8	91.0	0.3	-3.93	0.63	0.73	3.94	2.4	0.004	0.69	0.0	0.04	19.76	0.00	2.154	10.82	0.56	6.7	93.1	0.2	-0.11	0.64	0.65	0.85	3.43	39022	4420	12	0	74	168	0	logfile
✔	8SGZ	40474	2023-08-09	2023-04-13	3.2	2.69	3.12	3.1	0.004	0.79	0.0	0.05	13.24	0.00	2.154	15.29	1.21	7.4	92.6	0.1	-1.59	0.68	0.74	2.17	2.8	0.004	0.67	0.0	0.05	15.69	0.00	2.138	9.72	0.16	5.5	94.5	0.0	-1.76	1.37	0.72	0.83	2.30	53430	6876	18	0	6	0	0	logfile
✔	8SF0	40435	2023-08-16	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.50	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	3.0	0.004	0.54	0.0	0.04	17.77	0.00	2.211	7.39	0.40	1.4	98.6	0.0	2.01	0.39	0.64	0.84	2.36	20664	2512	8	0	8	0	0	logfile
✔	8SEZ	40434	2023-08-16	2023-04-10	3.54	3.68	3.48	3.6	0.003	0.57	0.0	0.04	12.88	0.01	0.570	14.92	0.27	2.9	96.9	0.2	1.95	0.53	0.75	1.99	3.6	0.003	0.60	0.0	0.04	16.08	0.01	2.104	9.63	0.45	3.2	96.6	0.2	1.87	0.61	0.57	0.78	2.05	20580	2508	8	4	4	0	0	logfile
✔	8SEY	40433	2023-08-16	2023-04-10	2.99	3.15	3.05	3.1	0.002	0.46	0.0	0.04	12.75	0.00	2.224	4.52	0.00	2.5	97.5	0.0	1.73	0.64	0.84	2.70	3.1	0.005	0.56	0.0	0.04	15.98	0.00	2.121	5.04	2.06	2.5	97.5	0.0	1.68	0.37	0.65	0.87	2.60	20568	2504	8	0	8	0	0	logfile
✔	8SEX	40432	2023-08-16	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.55	0.0	0.04	16.37	0.00	2.240	6.71	3.23	1.7	98.2	0.2	1.64	0.54	0.65	0.84	2.23	20568	2504	8	0	8	0	0	logfile

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