Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WYW	32896	2022-05-15	2022-02-16	3.8	3.91	—	3.8	0.011	1.41	0.0	0.07	18.83	0.01	1.861	10.89	10.30	8.6	90.7	0.6	-3.47	0.74	0.80	1.65	3.8	0.003	0.63	0.0	0.04	16.37	0.00	1.955	7.80	0.22	2.7	97.3	0.0	0.57	1.75	0.75	0.83	1.35	22606	2654	22	0	76	10	0	logfile
✔	7WYV	32895	2022-05-15	2022-02-16	3.7	3.47	—	3.7	0.010	1.26	0.0	0.06	18.85	0.01	1.954	9.25	10.52	8.0	91.6	0.5	-3.14	0.71	0.76	1.62	3.6	0.003	0.63	0.0	0.04	16.49	0.00	1.934	7.16	0.18	2.8	97.2	0.0	0.56	1.39	0.73	0.81	1.74	22668	2654	22	0	78	10	0	logfile
✔	7WYU	32894	2022-05-15	2022-02-16	3.4	3.42	—	3.4	0.011	1.26	0.0	0.06	18.74	0.01	1.911	9.58	10.48	7.6	92.1	0.3	-3.02	0.74	0.81	1.78	3.4	0.003	0.59	0.0	0.04	16.47	0.00	1.927	5.78	0.18	1.9	98.1	0.0	0.49	1.64	0.77	0.87	2.24	22662	2654	22	0	78	4	0	logfile
✔	7WXi	32880	2022-05-12	2022-02-14	4.2	4.31	4.10	4.2	0.007	0.80	2.0	0.05	15.55	0.00	2.148	25.03	0.58	18.2	81.8	0.0	-4.77	0.78	0.81	—	4.2	0.003	0.73	2.0	0.04	14.28	0.00	2.149	15.26	0.29	8.2	91.8	0.0	-1.30	1.25	0.78	0.80	—	6522	862	4	0	0	0	0	logfile
✔	7WXH	32879	2022-05-12	2022-02-14	4.3	4.50	3.92	4.3	0.006	0.86	0.0	0.04	14.12	0.00	2.067	26.18	1.74	11.4	88.3	0.2	-4.55	0.79	0.82	—	4.3	0.003	0.73	0.0	0.04	13.23	0.00	2.133	13.40	0.00	6.5	93.5	0.0	-1.42	1.33	0.77	0.80	—	6494	860	2	0	0	0	0	logfile
✔	7WXG	32878	2022-05-12	2022-02-14	4.2	4.21	3.56	4.2	0.012	0.99	0.0	0.05	18.01	0.00	2.184	12.77	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.69	0.0	0.04	16.61	0.00	2.273	9.27	0.00	6.1	93.9	0.0	-0.30	1.29	0.51	0.78	—	3295	430	1	0	1	0	0	logfile
✔	7WXF	32877	2022-05-12	2022-02-14	3.6	3.96	3.68	4.0	0.007	0.79	0.0	0.05	15.05	0.00	2.123	13.55	0.29	12.6	87.1	0.2	-4.85	0.72	0.79	1.44	3.9	0.004	0.79	0.0	0.05	16.20	0.01	2.130	12.32	0.43	8.2	91.8	0.0	-1.74	0.55	0.71	0.77	1.45	6494	860	2	0	0	0	0	logfile
✔	7WX4	32876	2022-05-12	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.004	0.55	0.0	0.04	17.63	0.00	2.140	5.46	0.00	6.0	94.0	0.0	-0.17	0.44	0.42	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	7WX3	32875	2022-05-12	2022-02-14	3.1	3.61	3.03	3.5	0.010	0.80	4.0	0.05	16.63	0.00	2.150	6.65	3.70	4.6	95.4	0.0	-3.51	0.57	0.78	1.78	3.5	0.005	0.67	4.0	0.04	16.96	0.00	2.071	6.23	0.44	3.0	97.0	0.0	-0.97	1.57	0.57	0.79	0.89	8472	1086	12	0	8	0	0	logfile
✔	7WVY	32862	2022-05-12	2022-02-11	3.0	2.82	—	3.0	0.003	0.51	0.0	0.04	12.97	0.00	2.251	9.55	0.13	1.9	98.1	0.0	0.72	0.59	0.73	2.50	3.0	0.005	0.66	0.0	0.04	15.82	0.00	2.142	13.30	2.80	2.6	97.4	0.0	0.61	0.57	0.63	0.80	2.81	7094	922	5	0	0	0	0	logfile
✔	7WVX	32861	2022-05-12	2022-02-11	2.8	2.96	—	3.0	0.002	0.49	0.0	0.04	12.15	0.00	2.251	8.66	0.00	2.1	97.9	0.0	0.86	0.60	0.76	2.80	3.0	0.004	0.61	0.0	0.04	15.74	0.00	2.142	12.78	2.14	3.2	96.8	0.0	0.32	1.18	0.63	0.82	3.05	7070	920	5	0	0	0	0	logfile
✔	7WVW	32860	2022-05-12	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.56	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.71	0.00	2.173	11.94	0.26	2.6	97.4	0.0	0.76	1.18	0.65	0.82	2.61	7169	924	5	0	0	0	0	logfile
✔	7WVV	32859	2022-05-12	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.78	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.004	0.57	0.0	0.04	15.41	0.01	2.120	11.34	1.89	2.7	97.3	0.0	0.33	0.45	0.63	0.80	2.87	7020	911	5	0	0	0	0	logfile
✔	7WVU	32858	2022-05-12	2022-02-11	3.3	3.40	—	3.4	0.002	0.47	0.0	0.04	13.25	0.00	2.221	8.81	0.00	2.3	97.7	0.0	0.98	0.58	0.72	1.55	3.4	0.004	0.60	0.0	0.04	15.32	0.00	2.224	11.92	0.71	3.0	97.0	0.0	0.60	1.14	0.62	0.78	2.11	6862	909	5	0	0	0	0	logfile
✔	7WVQ	32857	2022-05-16	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.77	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.5	0.003	0.69	0.0	0.04	11.33	0.00	2.105	13.30	0.03	3.2	96.8	0.1	-1.05	1.01	0.71	0.60	—	29527	3741	4	0	0	0	0	logfile
✔	7WVP	32856	2022-05-16	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.40	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.009	1.05	2.0	0.05	16.00	0.01	1.930	19.91	0.58	4.9	95.1	0.0	-1.52	1.53	0.75	0.67	0.40	29601	3750	4	0	0	0	0	logfile
✔	7WVo	32855	2022-05-15	2022-02-10	3.41	2.96	—	3.5	0.006	0.83	0.0	0.05	8.31	0.01	2.354	2.02	0.08	3.7	96.2	0.1	-3.17	0.72	0.68	0.86	3.5	0.004	0.77	0.0	0.05	14.61	0.00	2.110	12.50	0.50	2.9	97.1	0.0	-0.25	1.66	0.79	0.78	1.49	23188	2961	3	0	0	0	0	logfile
✔	7WVN	32854	2022-05-15	2022-02-10	3.4	2.96	—	3.5	0.006	0.83	0.0	0.05	8.23	0.01	2.348	1.91	0.11	3.7	96.2	0.1	-3.13	0.72	0.68	1.19	3.5	0.007	0.96	0.0	0.05	14.56	0.01	1.554	16.74	0.65	2.7	97.3	0.0	-0.53	1.18	0.79	0.78	1.72	24805	3162	3	0	0	0	0	logfile
✔	7WUQ	32838	2022-05-13	2022-02-09	2.9	3.09	—	3.1	0.006	1.06	1.0	0.07	14.17	0.01	2.204	23.35	0.47	5.0	95.0	0.0	-3.00	0.58	0.72	2.29	3.1	0.004	0.70	0.0	0.04	16.55	0.01	2.110	21.16	3.62	5.0	95.0	0.0	-0.67	0.64	0.57	0.77	2.51	7973	1009	5	0	0	0	0	logfile
✔	7WUJ	32837	2022-05-13	2022-02-08	3.3	3.09	—	3.1	0.007	1.00	0.0	0.06	13.92	0.01	2.219	19.10	0.51	7.1	92.9	0.0	-4.30	0.58	0.72	2.43	3.1	0.005	0.75	0.0	0.04	15.52	0.01	2.000	22.58	0.26	6.3	93.7	0.0	-1.27	1.59	0.57	0.73	1.18	8600	1209	6	0	0	0	0	logfile

• ← previous
• Page 3 of 376
• next →