Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P5C	13198	2021-09-02	2021-07-14	3.2	3.07	3.09	3.3	0.004	0.58	0.0	0.04	14.51	0.00	2.220	6.92	0.00	2.1	97.9	0.0	2.41	0.57	0.82	2.09	3.3	0.004	0.58	0.0	0.04	15.98	0.00	2.241	6.27	0.30	1.7	98.3	0.0	4.05	0.34	0.60	0.84	1.32	6222	784	6	0	8	0	0	logfile
✔	7P54	13194	2021-09-02	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	6.90	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.04	16.10	0.00	2.222	6.98	0.45	2.7	97.3	0.0	4.52	1.89	0.56	0.78	1.01	6248	794	8	0	12	0	0	logfile
✔	7P16	13157	2021-09-02	2021-07-01	4.3	4.40	3.53	4.3	0.003	0.63	0.0	0.04	15.19	0.00	2.178	7.29	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.004	0.68	0.0	0.04	14.57	0.00	2.161	11.41	0.00	4.1	95.9	0.0	1.03	1.47	0.65	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7P14	13155	2021-09-02	2021-07-01	3.66	3.82	3.50	3.8	0.006	0.80	0.0	0.04	16.89	0.00	2.295	7.18	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.011	1.29	0.0	0.04	16.62	0.00	2.178	12.54	0.25	3.8	96.2	0.0	2.73	0.43	0.62	0.79	1.57	3796	454	3	0	3	0	0	logfile
✔	7P13	13154	2021-09-03	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.6	0.003	0.48	0.0	0.03	17.14	0.00	2.005	14.47	1.59	2.4	97.6	0.0	5.03	0.51	0.83	0.87	3.65	13727	1743	7	0	0	0	154	logfile
✔	7P0Z	13153	2021-09-03	2021-07-01	2.43	2.02	2.18	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.21	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.47	0.0	0.03	18.25	0.00	2.223	4.02	1.34	1.2	98.8	0.0	5.81	0.57	0.82	0.86	1.74	12873	1652	7	0	0	0	0	logfile
✔	7P0M	13148	2021-09-04	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.40	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.003	0.51	0.0	0.04	16.47	0.00	2.016	9.38	2.29	1.8	98.2	0.0	1.61	0.26	0.96	0.89	2.23	25185	3185	19	0	45	0	0	logfile
✔	7P09	13146	2021-09-04	2021-06-29	2.7	3.13	—	3.1	0.003	0.52	0.0	0.04	13.21	0.00	1.839	6.50	0.00	1.4	98.6	0.0	0.76	0.77	0.85	3.34	3.1	0.003	0.56	0.0	0.04	16.00	0.00	1.933	8.37	1.40	1.7	98.3	0.0	0.85	0.45	0.78	0.87	2.74	25091	3185	13	0	21	0	0	logfile
✔	7oZV	13138	2021-09-02	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.59	0.0	0.04	13.29	0.01	2.202	8.35	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.002	0.46	0.0	0.04	15.38	0.00	2.159	7.56	0.00	2.6	97.4	0.0	0.23	2.66	0.73	0.82	2.60	8409	991	6	21	3	0	0	logfile
✔	7oZU	13135	2021-09-02	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.53	0.0	0.04	12.44	0.00	2.218	6.22	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.002	0.43	0.0	0.04	14.72	0.00	2.088	6.95	0.23	2.2	97.8	0.0	0.87	2.66	0.76	0.85	3.04	8408	991	6	21	3	0	0	logfile
✔	7oZ3	13119	2021-09-02	2021-06-25	4.46	4.17	4.34	4.0	0.009	1.36	2.0	0.08	23.15	0.00	2.334	8.38	0.29	4.3	95.7	0.0	0.64	0.85	0.79	—	4.0	0.003	0.59	0.0	0.04	21.04	0.00	2.179	10.69	0.15	2.9	97.1	0.0	1.77	0.85	0.87	0.83	—	8209	804	8	88	2	0	0	logfile
✘	7oUi	13078	2021-09-06	2021-06-11	2.79	3.20	—	3.1	0.017	2.00	0.0	0.06	18.28	0.04	1.216	51.35	1.81	5.1	94.7	0.2	0.45	0.63	0.78	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	84427	8342	108	0	374	139	0	logfile
✔	7oUH	13077	2021-09-03	2021-06-11	3.5	2.47	3.44	2.1	0.013	0.74	0.0	0.04	17.34	0.01	1.666	7.40	0.00	1.6	98.4	0.0	0.40	0.76	0.71	2.22	2.0	0.004	0.78	0.0	0.04	19.98	0.01	1.969	13.58	0.96	2.8	97.2	0.0	-0.37	0.75	0.75	0.75	2.23	15088	1664	18	80	10	6	0	logfile
✔	7oUG	13076	2021-09-03	2021-06-11	3.1	2.33	3.12	1.7	0.005	0.73	0.0	0.04	17.64	0.01	1.769	5.56	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	2.1	0.011	1.06	1.0	0.04	19.60	0.01	1.731	13.17	0.55	2.8	97.2	0.0	0.03	0.67	0.78	0.78	2.18	15090	1664	16	80	10	8	0	logfile
✔	7oUF	13075	2021-09-03	2021-06-11	3.0	2.26	3.09	1.7	0.005	0.57	0.0	0.04	17.33	0.00	1.686	6.05	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.5	0.011	1.17	0.0	0.04	19.95	0.01	1.937	11.20	1.44	2.9	97.1	0.0	0.12	1.76	0.79	0.79	2.65	15094	1664	16	80	10	12	0	logfile
✔	7oQZ	13035	2021-09-02	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.003	0.68	0.0	0.04	17.01	0.00	2.195	9.24	0.38	3.4	96.6	0.0	3.46	0.87	0.64	0.81	2.37	7996	948	8	0	16	0	0	logfile
✔	7oQC	13029	2021-09-05	2021-06-03	4.1	4.04	4.09	4.0	0.004	0.80	0.0	0.05	13.70	0.05	2.245	4.41	0.58	4.5	95.4	0.1	-3.86	0.57	0.63	—	4.0	0.003	1.07	0.0	0.04	15.05	0.01	2.063	11.94	0.15	4.6	95.3	0.1	0.56	1.11	0.59	0.68	—	35050	3078	18	568	53	0	0	logfile
✔	7oPE	13017	2021-09-06	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.79	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.008	0.82	1.0	0.04	17.72	0.01	1.527	34.47	0.97	7.1	92.8	0.1	-1.69	2.00	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	7oP8	13014	2021-09-02	2021-05-31	3.5	3.85	—	3.8	0.004	0.85	0.0	0.05	14.44	0.01	1.950	6.24	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.004	0.65	0.0	0.04	16.08	0.00	1.788	11.80	0.51	6.8	93.2	0.0	-0.97	0.95	0.67	0.79	0.59	8872	1118	1	0	2	0	0	logfile
✔	7oP5	13013	2021-09-02	2021-05-29	3.7	4.09	—	4.0	0.004	0.70	0.0	0.05	13.58	0.00	1.940	8.21	0.00	6.2	93.8	0.0	-1.69	0.68	0.78	1.67	4.0	0.004	0.62	0.0	0.04	15.85	0.01	1.944	8.85	0.53	6.3	93.7	0.0	-0.89	0.41	0.69	0.79	0.98	8554	1076	1	0	2	0	0	logfile

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