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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5BKK | 9407 | 2024-04-09 | 2021-03-19 | 3.5 | 3.17 | — | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 14.93 | 0.00 | 2.242 | 5.39 | 0.11 | 3.5 | 96.5 | 0.0 | -4.88 | 0.68 | 0.82 | 2.52 | 3.5 | 0.003 | 0.57 | 0.0 | 0.05 | 16.53 | 0.00 | 2.131 | 8.79 | 2.18 | 3.6 | 96.4 | 0.0 | -0.79 | 1.20 | 0.63 | 0.81 | 2.06 | 16831 | 2156 | 11 | 0 | 6 | 0 | 0 | logfile |
✘ | 5BKJ | 9406 | 2024-04-09 | 2021-03-19 | 3.5 | 3.68 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.06 | 15.41 | 0.00 | 2.251 | 5.00 | 1.09 | 4.1 | 95.9 | 0.0 | -3.93 | 0.69 | 0.84 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16939 | 2156 | 16 | 0 | 7 | 4 | 0 | logfile |
✔ | 5BKi | 9405 | 2024-04-09 | 2021-03-19 | 3.1 | 3.21 | — | 3.2 | 0.010 | 1.04 | 0.0 | 0.06 | 15.84 | 0.01 | 2.252 | 4.46 | 0.44 | 5.4 | 94.6 | 0.0 | -5.10 | 0.70 | 0.85 | 3.65 | 3.2 | 0.003 | 0.53 | 0.0 | 0.05 | 16.15 | 0.00 | 2.133 | 5.79 | 0.93 | 3.3 | 96.7 | 0.0 | 0.10 | 1.60 | 0.65 | 0.85 | 2.69 | 16933 | 2156 | 20 | 0 | 21 | 4 | 0 | logfile |
✔ | 5BKG | 9404 | 2024-04-08 | 2021-03-19 | 3.8 | 3.93 | — | 4.0 | 0.004 | 0.58 | 0.0 | 0.04 | 12.91 | 0.00 | 2.044 | 8.32 | 0.21 | 6.2 | 93.8 | 0.0 | -3.60 | 0.68 | 0.82 | 2.85 | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 15.73 | 0.00 | 2.048 | 11.34 | 3.64 | 4.4 | 95.6 | 0.0 | -0.52 | 0.61 | 0.70 | 0.85 | 2.07 | 13509 | 1689 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 5BKF | 9403 | 2024-04-08 | 2021-03-19 | 3.6 | 3.87 | — | 4.0 | 0.004 | 0.54 | 0.0 | 0.04 | 14.14 | 0.00 | 2.015 | 7.17 | 0.35 | 6.2 | 93.8 | 0.0 | -3.64 | 0.66 | 0.81 | 2.57 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 15.72 | 0.00 | 2.218 | 11.72 | 2.70 | 3.3 | 96.7 | 0.0 | -0.20 | 1.30 | 0.67 | 0.83 | 2.39 | 13470 | 1694 | 10 | 0 | 9 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2024-04-07 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.59 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✔ | 6NM9 | 9398 | 2024-04-11 | 2019-01-10 | 3.38 | 3.86 | — | 3.8 | 0.008 | 0.77 | 3.0 | 0.05 | 16.06 | 0.00 | 1.884 | 18.70 | 0.29 | 12.6 | 87.3 | 0.1 | -4.62 | 0.72 | 0.76 | 1.93 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 17.87 | 0.00 | 2.009 | 14.63 | 3.49 | 8.5 | 91.5 | 0.0 | -1.56 | 1.61 | 0.74 | 0.79 | 1.76 | 22916 | 2640 | 10 | 50 | 4 | 0 | 0 | logfile |
✔ | 6NJP | 9391 | 2024-04-10 | 2019-01-03 | 3.29 | 3.37 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 11.57 | 0.01 | 1.276 | 6.11 | 0.67 | 6.4 | 93.6 | 0.0 | -4.04 | 0.81 | 0.83 | 3.41 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 14.80 | 0.00 | 0.646 | 8.58 | 2.34 | 4.6 | 95.4 | 0.0 | -0.91 | 1.14 | 0.83 | 0.85 | 2.68 | 19607 | 2530 | 15 | 0 | 12 | 21 | 0 | logfile |
✔ | 6NJo | 9390 | 2024-04-10 | 2019-01-03 | 3.34 | 3.42 | — | 3.4 | 0.010 | 1.20 | 1.0 | 0.07 | 11.62 | 0.01 | 1.361 | 5.89 | 0.49 | 7.1 | 92.9 | 0.0 | -4.27 | 0.80 | 0.83 | 3.46 | 3.4 | 0.007 | 0.81 | 0.0 | 0.05 | 14.87 | 0.00 | 0.073 | 10.25 | 3.14 | 6.8 | 93.2 | 0.0 | -1.49 | 0.47 | 0.83 | 0.86 | 2.69 | 19090 | 2466 | 14 | 0 | 12 | 20 | 0 | logfile |
✔ | 6NJ9 | 9384 | 2024-04-12 | 2019-01-02 | 2.96 | 3.09 | 3.33 | 3.1 | 0.015 | 1.00 | 0.0 | 0.06 | 24.78 | 0.01 | 2.309 | 2.81 | 0.29 | 4.6 | 95.4 | 0.0 | -2.74 | 0.80 | 0.86 | 3.25 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 25.01 | 0.00 | 2.265 | 4.51 | 2.34 | 2.7 | 97.3 | 0.0 | 0.51 | 0.41 | 0.79 | 0.87 | 2.83 | 18814 | 1590 | 16 | 292 | 2 | 0 | 0 | logfile |
✔ | 6NiY | 9382 | 2024-04-06 | 2019-01-02 | 3.34 | 3.62 | 3.34 | 3.7 | 0.008 | 0.99 | 1.0 | 0.06 | 13.74 | 0.01 | 2.287 | 5.13 | 0.12 | 2.6 | 97.4 | 0.0 | -0.93 | 0.70 | 0.76 | 2.70 | 3.7 | 0.004 | 0.98 | 1.0 | 0.04 | 16.60 | 0.00 | 2.020 | 12.34 | 3.92 | 2.9 | 97.1 | 0.0 | 0.38 | 1.25 | 0.73 | 0.80 | 1.89 | 7727 | 965 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NiL | 9380 | 2024-04-09 | 2018-12-29 | 3.9 | 4.02 | — | 3.9 | 0.005 | 0.96 | 16.0 | 0.08 | 13.20 | 0.02 | 2.396 | 3.53 | 0.99 | 9.6 | 90.4 | 0.0 | -4.92 | 0.83 | 0.84 | 1.98 | 3.9 | 0.005 | 0.99 | 0.0 | 0.06 | 15.83 | 0.00 | 2.032 | 18.12 | 4.07 | 7.8 | 92.1 | 0.1 | -2.37 | 2.48 | 0.82 | 0.80 | 1.85 | 15220 | 1800 | 16 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Ni2 | 9375 | 2024-04-07 | 2018-12-26 | 4.0 | 4.38 | — | 4.1 | 0.010 | 1.33 | 0.0 | 0.07 | 9.61 | 0.01 | 2.245 | 6.60 | 0.00 | 6.7 | 93.1 | 0.1 | -1.50 | 0.75 | 0.71 | — | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 14.39 | 0.00 | 2.169 | 12.92 | 2.98 | 4.7 | 95.3 | 0.0 | 0.40 | 0.89 | 0.75 | 0.72 | — | 5381 | 704 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NHT | 9373 | 2024-04-12 | 2018-12-23 | 2.9 | 3.26 | 3.11 | 3.3 | 0.006 | 0.75 | 0.0 | 0.04 | 15.21 | 0.00 | 2.394 | 2.27 | 0.45 | 2.1 | 97.9 | 0.0 | -5.86 | 0.68 | 0.85 | 2.73 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 17.74 | 0.00 | 2.211 | 3.98 | 2.23 | 1.2 | 98.8 | 0.0 | 1.94 | 1.57 | 0.60 | 0.82 | 2.55 | 26136 | 3432 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NF8 | 9362 | 2024-04-08 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 17.55 | 0.00 | 1.916 | 3.08 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.55 | 0.00 | 2.086 | 13.55 | 2.24 | 5.6 | 94.4 | 0.0 | -0.33 | 2.61 | 0.84 | 0.80 | 1.14 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6NF6 | 9361 | 2024-04-06 | 2018-12-18 | 3.32 | 3.42 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 15.52 | 0.01 | 2.309 | 4.98 | 0.00 | 4.5 | 95.2 | 0.3 | -2.74 | 0.54 | 0.79 | 2.76 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.17 | 0.00 | 2.241 | 11.44 | 3.73 | 4.9 | 95.1 | 0.0 | 2.36 | 0.52 | 0.55 | 0.80 | 2.07 | 6598 | 822 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NF4 | 9360 | 2024-04-06 | 2018-12-18 | 2.98 | 3.35 | — | 3.3 | 0.009 | 1.09 | 0.0 | 0.07 | 13.59 | 0.01 | 2.379 | 2.34 | 0.27 | 3.2 | 96.8 | 0.0 | 0.16 | 0.69 | 0.84 | 3.04 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.22 | 0.00 | 2.210 | 6.23 | 2.30 | 4.0 | 96.0 | 0.0 | 4.18 | 1.14 | 0.57 | 0.83 | 1.97 | 6960 | 842 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6NF2 | 9359 | 2024-04-14 | 2018-12-18 | 3.7 | 4.23 | 3.72 | 4.0 | 0.009 | 1.27 | 0.0 | 0.07 | 21.01 | 0.01 | 2.242 | 6.24 | 0.45 | 6.2 | 93.7 | 0.2 | -2.90 | 0.81 | 0.85 | 2.53 | 4.0 | 0.004 | 0.77 | 0.0 | 0.05 | 15.15 | 0.00 | 2.035 | 12.95 | 2.39 | 6.4 | 93.6 | 0.0 | -0.95 | 0.66 | 0.81 | 0.85 | 2.42 | 32604 | 3867 | 78 | 0 | 186 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2024-04-08 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 17.57 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.76 | 0.00 | 2.098 | 13.26 | 1.83 | 5.2 | 94.7 | 0.1 | -0.39 | 1.96 | 0.85 | 0.85 | 1.35 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2024-04-13 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |