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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6J99 | 9783 | 2024-03-18 | 2019-01-22 | 4.1 | 4.24 | — | 4.2 | 0.008 | 0.98 | 1.0 | 0.05 | 27.10 | 0.01 | 2.204 | 7.71 | 0.00 | 8.0 | 92.0 | 0.0 | -2.88 | 0.65 | 0.52 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 27.19 | 0.00 | 2.129 | 18.26 | 0.00 | 4.8 | 95.2 | 0.0 | -0.60 | 2.15 | 0.77 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✔ | 6J8J | 9782 | 2024-03-15 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.90 | 0.01 | 1.829 | 71.00 | 28.80 | 2.5 | 96.2 | 1.3 | 2.79 | 0.59 | 0.76 | 1.66 | 3.4 | 0.005 | 0.82 | 0.0 | 0.07 | 18.15 | 0.00 | 2.100 | 10.52 | 5.05 | 3.9 | 95.8 | 0.3 | 0.43 | 1.41 | 0.59 | 0.83 | 1.79 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8i | 9782 | 2024-03-15 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.89 | 0.01 | 1.829 | 71.34 | 28.73 | 2.5 | 96.2 | 1.3 | 2.78 | 0.59 | 0.76 | 1.66 | 3.4 | 0.003 | 0.75 | 0.0 | 0.06 | 18.18 | 0.00 | 2.151 | 9.17 | 5.05 | 4.0 | 95.8 | 0.2 | 0.85 | 1.41 | 0.59 | 0.82 | 1.74 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8H | 9781 | 2024-03-15 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.72 | 0.01 | 1.886 | 58.60 | 27.17 | 2.0 | 96.6 | 1.3 | 2.87 | 0.60 | 0.78 | 1.53 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 18.52 | 0.00 | 2.179 | 7.78 | 6.06 | 4.1 | 95.7 | 0.2 | 0.70 | 1.35 | 0.60 | 0.83 | 1.95 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8G | 9781 | 2024-03-15 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.73 | 0.01 | 1.886 | 58.56 | 27.17 | 2.0 | 96.6 | 1.3 | 2.85 | 0.60 | 0.78 | 1.54 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 18.47 | 0.00 | 2.168 | 7.95 | 4.89 | 3.7 | 96.1 | 0.3 | 0.67 | 1.36 | 0.60 | 0.84 | 1.82 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8E | 9780 | 2024-03-15 | 2019-01-18 | 3.0 | 3.18 | — | 3.2 | 0.008 | 1.43 | 4.0 | 0.08 | 14.77 | 0.01 | 1.927 | 13.58 | 5.14 | 6.4 | 92.6 | 1.0 | -5.60 | 0.61 | 0.77 | 3.02 | 3.2 | 0.003 | 0.78 | 0.0 | 0.04 | 16.19 | 0.00 | 2.134 | 8.07 | 3.14 | 5.5 | 94.2 | 0.4 | 0.60 | 0.84 | 0.61 | 0.85 | 2.16 | 10482 | 1277 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6J40 | 9777 | 2024-03-19 | 2019-01-07 | 3.8 | 4.30 | — | 3.8 | 0.022 | 1.99 | 4.0 | 0.18 | 22.44 | 0.01 | 1.376 | 17.72 | 0.33 | 4.5 | 95.5 | 0.0 | -5.08 | 0.80 | 0.72 | 1.93 | 3.8 | 0.007 | 0.91 | 0.0 | 0.05 | 16.67 | 0.01 | 1.418 | 23.29 | 1.56 | 5.8 | 94.2 | 0.0 | -0.54 | 1.30 | 0.84 | 0.78 | 1.59 | 96390 | 8392 | 120 | 0 | 1656 | 0 | 0 | logfile |
✔ | 6J3Z | 9776 | 2024-03-16 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 20.67 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 17.23 | 0.00 | 1.473 | 14.34 | 2.68 | 3.4 | 96.6 | 0.0 | -0.16 | 0.74 | 0.81 | 0.82 | 2.62 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✔ | 6J3Y | 9775 | 2024-03-15 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.77 | 4.0 | 0.14 | 19.44 | 0.01 | 1.372 | 10.02 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.53 | 0.00 | 1.863 | 12.08 | 1.60 | 3.2 | 96.8 | 0.0 | 0.20 | 0.65 | 0.79 | 0.87 | 2.93 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |
✔ | 6J30 | 9773 | 2024-03-10 | 2019-01-03 | 4.5 | 4.74 | — | 4.6 | 0.002 | 0.44 | 0.0 | 0.04 | 7.35 | 0.00 | 2.093 | 8.60 | 0.07 | 6.4 | 93.4 | 0.3 | -3.38 | 0.86 | 0.72 | — | 4.5 | 0.003 | 0.71 | 0.0 | 0.04 | 12.06 | 0.00 | 1.958 | 19.18 | 0.03 | 5.4 | 94.3 | 0.2 | -0.51 | 1.88 | 0.89 | 0.77 | — | 106227 | 13504 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2024-03-10 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.003 | 0.79 | 1.0 | 0.05 | 15.50 | 0.00 | 2.027 | 18.60 | 2.34 | 5.0 | 94.8 | 0.2 | -0.94 | 1.89 | 0.84 | 0.78 | 0.94 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2Q | 9771 | 2024-03-10 | 2019-01-02 | 3.8 | 3.95 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.17 | 0.00 | 2.202 | 6.58 | 0.00 | 5.5 | 94.4 | 0.1 | -3.50 | 0.77 | 0.68 | 0.88 | 3.9 | 0.005 | 0.82 | 2.0 | 0.05 | 15.78 | 0.01 | 1.592 | 20.88 | 3.12 | 5.0 | 94.8 | 0.2 | -0.90 | 2.30 | 0.83 | 0.77 | 1.12 | 106311 | 13518 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0N | 9765 | 2024-03-27 | 2018-12-25 | 3.5 | 3.55 | — | 3.5 | 0.007 | 1.09 | 0.0 | 0.06 | 16.27 | 0.01 | 2.196 | 6.17 | 2.74 | 6.5 | 93.3 | 0.1 | -4.63 | 0.69 | 0.80 | 2.09 | 3.5 | 0.004 | 0.85 | 10.0 | 0.05 | 17.27 | 0.00 | 1.648 | 12.40 | 3.69 | 5.6 | 94.4 | 0.0 | -1.60 | 0.70 | 0.68 | 0.82 | 1.71 | 149886 | 19044 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0M | 9764 | 2024-03-15 | 2018-12-24 | 3.9 | 3.79 | — | 3.8 | 0.007 | 0.98 | 0.0 | 0.06 | 15.91 | 0.01 | 2.282 | 6.73 | 0.87 | 5.2 | 94.8 | 0.0 | -4.05 | 0.52 | 0.82 | 1.83 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 18.09 | 0.00 | 2.213 | 12.79 | 5.93 | 6.1 | 93.9 | 0.0 | -2.30 | 1.28 | 0.52 | 0.82 | 1.60 | 12585 | 1605 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0F | 9763 | 2024-03-17 | 2018-12-24 | 3.8 | 3.95 | — | 3.9 | 0.007 | 1.04 | 0.0 | 0.06 | 15.76 | 0.01 | 2.265 | 5.30 | 2.19 | 4.9 | 95.1 | 0.0 | -4.54 | 0.64 | 0.86 | 2.41 | 3.9 | 0.005 | 0.76 | 0.0 | 0.05 | 17.17 | 0.00 | 2.137 | 11.58 | 5.84 | 7.5 | 92.5 | 0.0 | -1.24 | 0.57 | 0.65 | 0.86 | 1.85 | 19314 | 2472 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0C | 9761 | 2024-03-22 | 2018-12-23 | 3.7 | 3.78 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.05 | 15.99 | 0.01 | 2.313 | 5.30 | 3.09 | 6.5 | 93.5 | 0.0 | -4.56 | 0.50 | 0.83 | 2.66 | 3.7 | 0.002 | 0.68 | 0.0 | 0.04 | 16.66 | 0.00 | 2.146 | 9.27 | 2.69 | 5.4 | 94.6 | 0.0 | -1.03 | 2.39 | 0.50 | 0.84 | 1.91 | 33108 | 4248 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0B | 9760 | 2024-03-25 | 2018-12-23 | 2.9 | 3.24 | — | 3.2 | 0.008 | 0.96 | 0.0 | 0.06 | 15.44 | 0.01 | 2.311 | 4.89 | 4.01 | 3.8 | 96.0 | 0.2 | -3.73 | 0.57 | 0.83 | 3.57 | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 17.16 | 0.00 | 2.172 | 8.37 | 4.80 | 3.7 | 96.2 | 0.1 | -1.02 | 0.74 | 0.56 | 0.85 | 3.16 | 46788 | 6000 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iZV | 9758 | 2024-03-10 | 2018-12-20 | 4.2 | 4.27 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 10.55 | 0.01 | 2.170 | 5.77 | 0.00 | 4.9 | 95.1 | 0.0 | -3.60 | 0.68 | 0.81 | — | 4.1 | 0.005 | 0.75 | 0.0 | 0.05 | 12.66 | 0.00 | 1.884 | 17.14 | 0.00 | 8.5 | 91.5 | 0.0 | -1.21 | 1.00 | 0.70 | 0.83 | — | 5624 | 698 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6iZR | 9757 | 2024-03-18 | 2018-12-20 | 4.7 | 4.86 | — | 4.7 | 0.004 | 0.90 | 0.0 | 0.05 | 11.50 | 0.01 | 2.086 | 6.63 | 0.26 | 6.9 | 93.1 | 0.0 | -4.07 | 0.68 | 0.78 | — | 4.7 | 0.004 | 0.84 | 0.0 | 0.05 | 13.48 | 0.00 | 1.741 | 20.97 | 0.64 | 7.4 | 92.6 | 0.0 | -0.91 | 2.02 | 0.66 | 0.71 | — | 84360 | 10470 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 6iYC | 9751 | 2024-03-15 | 2018-12-14 | 2.6 | 2.84 | — | 2.9 | 0.011 | 1.20 | 0.0 | 0.07 | 15.02 | 0.01 | 2.053 | 3.52 | 0.88 | 7.5 | 92.3 | 0.2 | -3.74 | 0.71 | 0.85 | 3.81 | 2.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.53 | 0.00 | 2.109 | 6.77 | 2.19 | 5.7 | 94.2 | 0.1 | 0.40 | 1.29 | 0.71 | 0.87 | 2.64 | 11037 | 1355 | 14 | 0 | 26 | 0 | 0 | logfile |