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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6KV5 | 9577 | 2024-04-08 | 2019-09-03 | 4.6 | 4.71 | — | 4.6 | 0.004 | 0.82 | 0.0 | 0.05 | 9.59 | 0.01 | 2.225 | 7.54 | 0.41 | 8.6 | 91.3 | 0.1 | -4.90 | 0.73 | 0.68 | — | 4.6 | 0.003 | 0.74 | 0.0 | 0.04 | 12.72 | 0.00 | 2.102 | 15.30 | 0.07 | 7.0 | 92.9 | 0.1 | -1.53 | 1.19 | 0.76 | 0.72 | — | 13532 | 1679 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H1S | 9572 | 2024-04-13 | 2016-10-11 | 3.5 | 3.54 | — | 3.5 | 0.010 | 1.06 | 1.0 | 0.07 | 25.45 | 0.01 | 1.028 | 46.50 | 3.21 | 16.7 | 81.7 | 1.6 | -4.90 | 0.78 | 0.77 | 1.92 | 3.5 | 0.005 | 0.76 | 0.0 | 0.04 | 24.74 | 0.01 | 1.912 | 14.62 | 6.09 | 12.2 | 87.5 | 0.3 | -2.82 | 0.65 | 0.79 | 0.82 | 0.98 | 90825 | 3276 | 32 | 3018 | 0 | 0 | 0 | logfile |
✘ | 5H1Q | 9570 | 2024-04-11 | 2016-10-11 | 3.3 | 3.90 | — | 4.0 | 0.008 | 1.04 | 0.0 | 0.06 | 11.65 | 0.00 | 1.998 | 16.22 | 0.31 | 12.6 | 86.8 | 0.6 | -5.07 | 0.44 | 0.69 | 3.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23784 | 2888 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H4P | 9569 | 2024-04-09 | 2016-11-01 | 3.07 | 3.58 | — | 3.5 | 0.008 | 0.86 | 0.0 | 0.05 | 22.13 | 0.01 | 1.709 | 13.77 | 0.15 | 6.2 | 92.9 | 0.9 | -4.11 | 0.70 | 0.78 | 2.90 | 3.5 | 0.006 | 0.75 | 0.0 | 0.04 | 22.37 | 0.01 | 2.008 | 12.52 | 5.03 | 8.5 | 91.1 | 0.4 | -1.95 | 0.61 | 0.68 | 0.79 | 2.48 | 122929 | 6432 | 44 | 3370 | 0 | 0 | 0 | logfile |
✔ | 5H1C | 9567 | 2024-04-06 | 2016-10-08 | 4.5 | 4.34 | — | 3.8 | 0.009 | 1.30 | 0.0 | 0.05 | 15.37 | 0.00 | 1.454 | 41.46 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.52 | 0.66 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 15.23 | 0.00 | 1.883 | 16.17 | 0.00 | 6.1 | 92.8 | 1.1 | 0.25 | 1.57 | 0.58 | 0.83 | — | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 5H1B | 9566 | 2024-04-06 | 2016-10-08 | 4.4 | 3.94 | — | 3.6 | 0.010 | 1.41 | 0.0 | 0.06 | 16.13 | 0.01 | 1.503 | 54.25 | 5.67 | 6.2 | 91.1 | 2.6 | -1.51 | 0.59 | 0.70 | — | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 13.69 | 0.00 | 1.920 | 15.92 | 0.13 | 4.7 | 94.4 | 0.9 | 0.57 | 2.98 | 0.64 | 0.82 | — | 7359 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2024-04-07 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2024-04-07 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GUP | 9539 | 2024-04-06 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✘ | 5GoA | 9529 | 2024-04-16 | 2016-07-26 | 4.2 | 4.52 | — | 4.2 | 0.022 | 1.86 | 60.0 | 0.12 | 12.40 | 0.01 | 1.505 | 7.29 | 1.03 | 8.5 | 90.9 | 0.7 | -4.96 | 0.81 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105072 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5Go9 | 9528 | 2024-04-16 | 2016-07-26 | 4.4 | 4.59 | — | 4.4 | 0.020 | 1.79 | 36.0 | 0.11 | 12.27 | 0.01 | 2.185 | 7.55 | 0.88 | 8.7 | 90.7 | 0.6 | -4.90 | 0.78 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105068 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GMK | 9525 | 2024-04-11 | 2016-07-14 | 3.4 | 3.52 | — | 3.5 | 0.012 | 1.25 | 16.0 | 0.07 | 16.17 | 0.01 | 1.378 | 19.35 | 2.77 | 7.7 | 91.2 | 1.0 | -3.71 | 0.47 | 0.53 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75273 | 8026 | 51 | 404 | 981 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2024-04-06 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 15.15 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✘ | 5GL0 | 9520 | 2024-04-06 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GKZ | 9519 | 2024-04-06 | 2016-07-07 | 4.0 | 4.10 | — | 4.0 | 0.019 | 1.71 | 36.0 | 0.11 | 11.29 | 0.01 | 1.755 | 15.04 | 0.51 | 6.5 | 91.2 | 2.3 | -2.89 | 0.72 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2024-04-06 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2024-04-11 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 12.66 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2024-04-11 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.62 | 32.0 | 0.08 | 15.74 | 0.01 | 1.695 | 18.01 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2024-04-15 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 5GJQ | 9511 | 2024-04-15 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |