Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NYX	12657	2023-02-27	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.28	0.00	1.844	11.21	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.2	0.004	0.59	0.0	0.04	17.03	0.00	0.850	17.45	0.00	5.3	94.7	0.0	0.67	0.56	0.90	0.83	—	70784	4186	18	104	6	0	34688	logfile
✘	6SWC	10322	2023-02-27	2019-09-20	3.3	4.36	3.31	3.3	0.015	0.97	0.0	0.05	16.16	0.04	1.823	9.66	0.13	13.4	86.6	0.0	-5.19	0.83	0.72	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70744	4519	48	1593	41	42	0	logfile
✔	3J9X	6310	2023-02-27	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.45	3.7	0.004	0.74	0.0	0.04	16.24	0.01	2.066	20.46	0.31	2.0	98.0	0.0	1.89	1.20	0.63	0.78	1.89	70702	7424	60	696	0	0	0	logfile
✘	6SW9	10320	2023-02-27	2019-09-20	4.2	5.88	4.46	3.0	0.016	1.26	0.0	0.06	18.23	0.04	1.769	31.75	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✔	3JBT	6480	2023-02-27	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.61	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.003	0.78	0.0	0.04	16.97	0.00	1.830	16.09	0.59	7.8	91.5	0.7	-1.46	1.75	0.70	0.68	0.58	70252	8736	28	0	21	0	0	logfile
✔	6J3Y	9775	2023-02-27	2019-01-07	3.3	3.49	—	3.4	0.019	1.72	4.0	0.14	17.96	0.01	1.372	10.00	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.004	0.68	0.0	0.04	16.88	0.00	1.992	12.58	0.43	3.4	96.6	0.0	0.05	0.65	0.79	0.87	2.82	70136	6984	90	0	428	0	0	logfile
✔	7K57	22676	2023-02-27	2020-09-16	3.7	4.17	3.78	4.0	0.007	1.03	0.0	0.06	15.81	0.01	2.107	6.10	0.94	5.9	94.1	0.0	-4.46	0.85	0.83	0.74	4.0	0.005	0.72	0.0	0.05	16.44	0.00	2.111	11.04	0.35	6.6	93.4	0.0	-0.88	0.56	0.85	0.83	0.69	70104	8892	12	0	0	0	0	logfile
✔	7CPX	30434	2023-02-27	2020-08-08	2.91	3.01	2.94	3.0	0.004	0.66	0.0	0.04	11.47	0.00	1.981	9.52	2.99	5.1	94.9	0.1	-0.56	0.54	0.56	2.41	3.0	0.004	0.68	0.0	0.05	15.69	0.00	1.907	17.46	2.44	5.9	94.1	0.1	-1.16	1.36	0.70	0.75	2.87	70068	4524	4	0	2	0	34668	logfile
✔	5N8N	3600	2023-02-27	2017-02-23	3.28	3.38	—	3.4	0.019	1.34	0.0	0.12	11.08	0.01	1.755	21.54	0.81	4.4	95.6	0.0	-2.91	0.40	0.82	2.76	3.4	0.003	0.65	0.0	0.04	15.66	0.00	2.088	10.65	0.34	6.0	93.4	0.6	0.02	1.47	0.42	0.85	2.38	70035	8895	30	0	0	0	0	logfile
✔	7CWT	30487	2023-02-27	2020-08-31	3.7	3.88	—	3.7	0.009	1.17	16.0	0.11	11.07	0.01	1.257	28.32	1.43	6.9	92.5	0.6	-2.94	0.58	0.48	1.06	3.7	0.005	0.74	0.0	0.04	13.89	0.00	1.435	15.28	0.51	10.9	88.8	0.3	-2.71	1.90	0.65	0.64	1.45	70024	4584	18	0	14	0	34386	logfile
✔	6CB1	7445	2023-02-27	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.79	0.0	0.04	18.17	0.00	2.026	21.56	0.00	8.9	91.1	0.0	-1.66	2.04	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	6PB4	20286	2023-02-27	2019-06-13	4.35	5.03	—	4.3	0.010	1.16	0.0	0.06	16.29	0.01	1.840	11.04	0.06	11.5	88.1	0.4	-4.77	0.69	0.43	—	4.2	0.003	0.68	0.0	0.04	16.64	0.00	1.509	17.65	0.00	8.8	91.1	0.2	-2.71	1.23	0.83	0.73	—	69922	4091	14	158	6	0	34409	logfile
✘	8CSR	26968	2023-02-27	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	14.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69868	6354	42	854	43	46	0	logfile
✔	6UoV	20833	2023-02-27	2019-10-15	3.5	3.64	—	3.6	0.009	1.13	0.0	0.06	11.36	0.01	2.232	6.67	3.40	6.4	93.6	0.0	-5.22	0.75	0.82	3.09	3.6	0.003	0.70	0.0	0.04	15.13	0.00	2.105	11.89	0.31	5.0	95.0	0.0	-1.30	1.63	0.75	0.82	2.20	69851	8694	46	0	0	0	0	logfile
✔	6PB6	20288	2023-02-27	2019-06-13	4.29	5.03	—	4.3	0.010	1.13	0.0	0.05	16.04	0.01	1.968	10.82	0.11	10.6	89.1	0.3	-4.79	0.68	0.43	—	4.3	0.003	0.68	0.0	0.04	16.93	0.00	1.881	17.30	0.00	8.7	91.3	0.1	-2.58	0.93	0.83	0.74	—	69824	4091	13	156	5	0	34388	logfile
✔	7RLi	24531	2023-02-27	2021-07-23	3.1	3.39	—	2.6	0.005	0.95	0.0	0.05	16.39	0.01	1.481	17.49	0.00	5.3	94.4	0.3	-1.57	0.88	0.82	1.37	2.7	0.005	0.69	0.0	0.05	16.87	0.00	2.048	14.85	0.29	4.7	95.0	0.3	-0.78	1.53	0.90	0.87	1.86	69768	8820	24	0	24	0	0	logfile
✔	7NAP	24277	2023-02-27	2021-06-22	3.2	3.90	—	3.6	0.005	0.74	0.0	0.05	13.06	0.01	2.090	2.71	0.00	1.2	98.7	0.1	1.23	0.86	0.84	2.15	3.6	0.003	0.72	0.0	0.04	15.72	0.00	2.042	12.50	0.35	2.7	97.3	0.0	1.53	0.79	0.86	0.86	1.85	69762	9240	42	0	0	0	0	logfile
✔	6WM3	21848	2023-02-27	2020-04-20	3.4	3.61	—	3.5	0.007	0.71	0.0	0.04	16.93	0.00	2.026	11.26	8.84	7.8	92.2	0.0	-2.80	0.76	0.82	2.00	3.5	0.003	0.63	0.0	0.04	16.94	0.00	2.119	9.37	0.35	4.4	95.6	0.0	0.39	1.21	0.77	0.84	1.61	69755	9210	39	0	9	0	0	logfile
✔	7WD9	32435	2023-02-27	2021-12-21	3.7	4.02	—	3.8	0.003	0.45	0.0	0.04	7.35	0.00	1.967	2.77	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.67	0.0	0.04	13.71	0.00	1.827	13.36	0.18	5.5	94.4	0.1	-1.17	1.35	0.75	0.69	1.03	69720	4533	9	0	0	0	34404	logfile
✔	6PB5	20287	2023-02-27	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.15	0.01	1.966	13.18	0.26	11.6	87.7	0.7	-4.55	0.58	0.19	—	4.0	0.004	0.80	0.0	0.04	16.87	0.01	1.752	28.81	0.00	11.3	88.5	0.2	-3.26	2.26	0.78	0.63	—	69696	4084	13	156	5	0	34319	logfile

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