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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NYX | 12657 | 2023-02-27 | 2021-03-23 | 4.6 | 7.95 | 4.57 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.28 | 0.00 | 1.844 | 11.21 | 0.00 | 3.4 | 96.6 | 0.0 | 1.74 | 0.88 | 0.79 | — | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 17.03 | 0.00 | 0.850 | 17.45 | 0.00 | 5.3 | 94.7 | 0.0 | 0.67 | 0.56 | 0.90 | 0.83 | — | 70784 | 4186 | 18 | 104 | 6 | 0 | 34688 | logfile |
✘ | 6SWC | 10322 | 2023-02-27 | 2019-09-20 | 3.3 | 4.36 | 3.31 | 3.3 | 0.015 | 0.97 | 0.0 | 0.05 | 16.16 | 0.04 | 1.823 | 9.66 | 0.13 | 13.4 | 86.6 | 0.0 | -5.19 | 0.83 | 0.72 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70744 | 4519 | 48 | 1593 | 41 | 42 | 0 | logfile |
✔ | 3J9X | 6310 | 2023-02-27 | 2015-03-21 | 3.8 | 3.84 | — | 3.8 | 0.014 | 1.24 | 0.0 | 0.08 | 13.09 | 0.02 | 2.369 | 3.42 | 0.48 | 2.8 | 95.6 | 1.6 | -0.65 | 0.51 | 0.57 | 0.45 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 16.24 | 0.01 | 2.066 | 20.46 | 0.31 | 2.0 | 98.0 | 0.0 | 1.89 | 1.20 | 0.63 | 0.78 | 1.89 | 70702 | 7424 | 60 | 696 | 0 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2023-02-27 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 18.23 | 0.04 | 1.769 | 31.75 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✔ | 3JBT | 6480 | 2023-02-27 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.56 | 0.01 | 1.919 | 70.61 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.003 | 0.78 | 0.0 | 0.04 | 16.97 | 0.00 | 1.830 | 16.09 | 0.59 | 7.8 | 91.5 | 0.7 | -1.46 | 1.75 | 0.70 | 0.68 | 0.58 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 6J3Y | 9775 | 2023-02-27 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.72 | 4.0 | 0.14 | 17.96 | 0.01 | 1.372 | 10.00 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 16.88 | 0.00 | 1.992 | 12.58 | 0.43 | 3.4 | 96.6 | 0.0 | 0.05 | 0.65 | 0.79 | 0.87 | 2.82 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |
✔ | 7K57 | 22676 | 2023-02-27 | 2020-09-16 | 3.7 | 4.17 | 3.78 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 15.81 | 0.01 | 2.107 | 6.10 | 0.94 | 5.9 | 94.1 | 0.0 | -4.46 | 0.85 | 0.83 | 0.74 | 4.0 | 0.005 | 0.72 | 0.0 | 0.05 | 16.44 | 0.00 | 2.111 | 11.04 | 0.35 | 6.6 | 93.4 | 0.0 | -0.88 | 0.56 | 0.85 | 0.83 | 0.69 | 70104 | 8892 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CPX | 30434 | 2023-02-27 | 2020-08-08 | 2.91 | 3.01 | 2.94 | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 11.47 | 0.00 | 1.981 | 9.52 | 2.99 | 5.1 | 94.9 | 0.1 | -0.56 | 0.54 | 0.56 | 2.41 | 3.0 | 0.004 | 0.68 | 0.0 | 0.05 | 15.69 | 0.00 | 1.907 | 17.46 | 2.44 | 5.9 | 94.1 | 0.1 | -1.16 | 1.36 | 0.70 | 0.75 | 2.87 | 70068 | 4524 | 4 | 0 | 2 | 0 | 34668 | logfile |
✔ | 5N8N | 3600 | 2023-02-27 | 2017-02-23 | 3.28 | 3.38 | — | 3.4 | 0.019 | 1.34 | 0.0 | 0.12 | 11.08 | 0.01 | 1.755 | 21.54 | 0.81 | 4.4 | 95.6 | 0.0 | -2.91 | 0.40 | 0.82 | 2.76 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.66 | 0.00 | 2.088 | 10.65 | 0.34 | 6.0 | 93.4 | 0.6 | 0.02 | 1.47 | 0.42 | 0.85 | 2.38 | 70035 | 8895 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CWT | 30487 | 2023-02-27 | 2020-08-31 | 3.7 | 3.88 | — | 3.7 | 0.009 | 1.17 | 16.0 | 0.11 | 11.07 | 0.01 | 1.257 | 28.32 | 1.43 | 6.9 | 92.5 | 0.6 | -2.94 | 0.58 | 0.48 | 1.06 | 3.7 | 0.005 | 0.74 | 0.0 | 0.04 | 13.89 | 0.00 | 1.435 | 15.28 | 0.51 | 10.9 | 88.8 | 0.3 | -2.71 | 1.90 | 0.65 | 0.64 | 1.45 | 70024 | 4584 | 18 | 0 | 14 | 0 | 34386 | logfile |
✔ | 6CB1 | 7445 | 2023-02-27 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 16.94 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.79 | 0.0 | 0.04 | 18.17 | 0.00 | 2.026 | 21.56 | 0.00 | 8.9 | 91.1 | 0.0 | -1.66 | 2.04 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 6PB4 | 20286 | 2023-02-27 | 2019-06-13 | 4.35 | 5.03 | — | 4.3 | 0.010 | 1.16 | 0.0 | 0.06 | 16.29 | 0.01 | 1.840 | 11.04 | 0.06 | 11.5 | 88.1 | 0.4 | -4.77 | 0.69 | 0.43 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 16.64 | 0.00 | 1.509 | 17.65 | 0.00 | 8.8 | 91.1 | 0.2 | -2.71 | 1.23 | 0.83 | 0.73 | — | 69922 | 4091 | 14 | 158 | 6 | 0 | 34409 | logfile |
✘ | 8CSR | 26968 | 2023-02-27 | 2022-05-13 | 2.54 | 2.48 | 2.56 | 2.6 | 0.004 | 0.65 | 0.0 | 0.38 | 14.52 | 0.01 | 1.910 | 2.68 | 0.00 | 1.7 | 98.3 | 0.0 | 1.19 | 0.72 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69868 | 6354 | 42 | 854 | 43 | 46 | 0 | logfile |
✔ | 6UoV | 20833 | 2023-02-27 | 2019-10-15 | 3.5 | 3.64 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 11.36 | 0.01 | 2.232 | 6.67 | 3.40 | 6.4 | 93.6 | 0.0 | -5.22 | 0.75 | 0.82 | 3.09 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 15.13 | 0.00 | 2.105 | 11.89 | 0.31 | 5.0 | 95.0 | 0.0 | -1.30 | 1.63 | 0.75 | 0.82 | 2.20 | 69851 | 8694 | 46 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PB6 | 20288 | 2023-02-27 | 2019-06-13 | 4.29 | 5.03 | — | 4.3 | 0.010 | 1.13 | 0.0 | 0.05 | 16.04 | 0.01 | 1.968 | 10.82 | 0.11 | 10.6 | 89.1 | 0.3 | -4.79 | 0.68 | 0.43 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 16.93 | 0.00 | 1.881 | 17.30 | 0.00 | 8.7 | 91.3 | 0.1 | -2.58 | 0.93 | 0.83 | 0.74 | — | 69824 | 4091 | 13 | 156 | 5 | 0 | 34388 | logfile |
✔ | 7RLi | 24531 | 2023-02-27 | 2021-07-23 | 3.1 | 3.39 | — | 2.6 | 0.005 | 0.95 | 0.0 | 0.05 | 16.39 | 0.01 | 1.481 | 17.49 | 0.00 | 5.3 | 94.4 | 0.3 | -1.57 | 0.88 | 0.82 | 1.37 | 2.7 | 0.005 | 0.69 | 0.0 | 0.05 | 16.87 | 0.00 | 2.048 | 14.85 | 0.29 | 4.7 | 95.0 | 0.3 | -0.78 | 1.53 | 0.90 | 0.87 | 1.86 | 69768 | 8820 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7NAP | 24277 | 2023-02-27 | 2021-06-22 | 3.2 | 3.90 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.06 | 0.01 | 2.090 | 2.71 | 0.00 | 1.2 | 98.7 | 0.1 | 1.23 | 0.86 | 0.84 | 2.15 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 15.72 | 0.00 | 2.042 | 12.50 | 0.35 | 2.7 | 97.3 | 0.0 | 1.53 | 0.79 | 0.86 | 0.86 | 1.85 | 69762 | 9240 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WM3 | 21848 | 2023-02-27 | 2020-04-20 | 3.4 | 3.61 | — | 3.5 | 0.007 | 0.71 | 0.0 | 0.04 | 16.93 | 0.00 | 2.026 | 11.26 | 8.84 | 7.8 | 92.2 | 0.0 | -2.80 | 0.76 | 0.82 | 2.00 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.94 | 0.00 | 2.119 | 9.37 | 0.35 | 4.4 | 95.6 | 0.0 | 0.39 | 1.21 | 0.77 | 0.84 | 1.61 | 69755 | 9210 | 39 | 0 | 9 | 0 | 0 | logfile |
✔ | 7WD9 | 32435 | 2023-02-27 | 2021-12-21 | 3.7 | 4.02 | — | 3.8 | 0.003 | 0.45 | 0.0 | 0.04 | 7.35 | 0.00 | 1.967 | 2.77 | 0.00 | 4.2 | 95.6 | 0.1 | -1.79 | 0.57 | 0.42 | 0.74 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 13.71 | 0.00 | 1.827 | 13.36 | 0.18 | 5.5 | 94.4 | 0.1 | -1.17 | 1.35 | 0.75 | 0.69 | 1.03 | 69720 | 4533 | 9 | 0 | 0 | 0 | 34404 | logfile |
✔ | 6PB5 | 20287 | 2023-02-27 | 2019-06-13 | 4.52 | 5.95 | — | 8.8 | 0.011 | 1.31 | 0.0 | 0.06 | 16.15 | 0.01 | 1.966 | 13.18 | 0.26 | 11.6 | 87.7 | 0.7 | -4.55 | 0.58 | 0.19 | — | 4.0 | 0.004 | 0.80 | 0.0 | 0.04 | 16.87 | 0.01 | 1.752 | 28.81 | 0.00 | 11.3 | 88.5 | 0.2 | -3.26 | 2.26 | 0.78 | 0.63 | — | 69696 | 4084 | 13 | 156 | 5 | 0 | 34319 | logfile |