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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J1Q | 5415 | 2022-05-01 | 2012-04-30 | 4.5 | 4.62 | — | 4.6 | 0.009 | 1.72 | 0.0 | 0.10 | 17.68 | 0.01 | 2.064 | 63.50 | 14.85 | 8.2 | 89.9 | 1.9 | -4.91 | 0.74 | 0.64 | — | 4.6 | 0.005 | 0.79 | 0.0 | 0.04 | 14.10 | 0.01 | 2.010 | 18.75 | 0.22 | 5.9 | 94.1 | 0.0 | -1.75 | 1.30 | 0.81 | 0.77 | — | 248160 | 31020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWA | 20502 | 2022-05-01 | 2019-07-22 | 3.3 | 3.75 | 3.32 | 3.7 | 0.010 | 0.82 | 0.0 | 0.05 | 12.81 | 0.01 | 2.276 | 2.94 | 3.91 | 4.3 | 95.7 | 0.0 | -3.13 | 0.73 | 0.90 | 4.68 | 3.7 | 0.003 | 0.53 | 0.0 | 0.04 | 14.41 | 0.00 | 2.102 | 4.44 | 0.13 | 2.8 | 97.2 | 0.0 | -0.71 | 0.45 | 0.68 | 0.90 | 3.83 | 248160 | 31140 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U20 | 20615 | 2022-05-01 | 2019-08-18 | 3.3 | 4.23 | 3.54 | 4.1 | 0.009 | 0.83 | 0.0 | 0.05 | 13.51 | 0.01 | 2.254 | 2.45 | 5.30 | 4.0 | 96.0 | 0.0 | -3.26 | 0.72 | 0.72 | 0.76 | 4.0 | 0.005 | 0.75 | 0.0 | 0.04 | 16.30 | 0.00 | 2.026 | 12.85 | 0.54 | 4.2 | 95.8 | 0.0 | -1.22 | 0.83 | 0.68 | 0.84 | 3.00 | 248160 | 31140 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U2V | 20626 | 2022-05-01 | 2019-08-20 | 3.6 | 4.12 | 3.88 | 4.0 | 0.008 | 0.74 | 0.0 | 0.04 | 14.57 | 0.00 | 2.172 | 14.63 | 3.09 | 5.4 | 94.6 | 0.0 | -3.59 | 0.61 | 0.80 | 2.16 | 4.0 | 0.005 | 0.70 | 0.0 | 0.04 | 16.80 | 0.00 | 2.003 | 14.71 | 0.58 | 5.0 | 95.0 | 0.0 | -1.48 | 0.76 | 0.64 | 0.85 | 2.96 | 248160 | 31140 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UBM | 20710 | 2022-05-01 | 2019-09-12 | 3.3 | 4.23 | 3.63 | 4.1 | 0.007 | 0.84 | 0.0 | 0.05 | 9.74 | 0.01 | 0.759 | 48.25 | 0.22 | 4.0 | 96.0 | 0.0 | -3.01 | 0.70 | 0.66 | 0.37 | 4.0 | 0.006 | 0.79 | 0.0 | 0.05 | 16.25 | 0.01 | 1.982 | 16.96 | 0.63 | 4.6 | 95.4 | 0.0 | -1.75 | 1.99 | 0.72 | 0.85 | 2.81 | 248160 | 31140 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o9R | 0663 | 2022-05-01 | 2019-03-14 | 2.75 | 3.02 | — | 3.0 | 0.011 | 0.87 | 0.0 | 0.06 | 9.38 | 0.01 | 2.204 | 10.63 | 0.22 | 1.7 | 98.3 | 0.0 | -1.28 | 0.77 | 0.88 | 6.11 | 3.0 | 0.004 | 0.61 | 0.0 | 0.04 | 14.19 | 0.00 | 2.154 | 7.88 | 1.83 | 2.3 | 97.7 | 0.0 | -0.04 | 0.54 | 0.76 | 0.90 | 5.54 | 247980 | 31200 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MTP | 23993 | 2022-05-01 | 2021-05-13 | 2.79 | 3.30 | — | 3.4 | 0.011 | 1.20 | 180.0 | 0.07 | 9.77 | 0.01 | 1.746 | 18.64 | 0.22 | 2.9 | 96.9 | 0.2 | -2.75 | 0.67 | 0.80 | 4.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 247860 | 31080 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9M | 2876 | 2022-05-25 | 2015-02-08 | 3.5 | 3.59 | 3.50 | 3.5 | 0.007 | 1.35 | 38.0 | 0.09 | 19.29 | 0.01 | 1.242 | 5.74 | 9.06 | 8.2 | 89.4 | 2.4 | -1.72 | 0.66 | 0.76 | 1.82 | 3.5 | 0.006 | 0.82 | 3.0 | 0.04 | 18.30 | 0.01 | 1.706 | 13.73 | 0.37 | 6.6 | 92.8 | 0.6 | 0.04 | 0.88 | 0.76 | 0.83 | 1.45 | 158384 | 12902 | 97 | 2454 | 309 | 0 | 0 | logfile |
✘ | 7o3Y | 12712 | 2022-05-25 | 2021-04-03 | 3.8 | 5.36 | 4.02 | 6.6 | 0.017 | 1.23 | 0.0 | 0.07 | 17.45 | 0.01 | 1.232 | 13.83 | 1.39 | 2.3 | 97.7 | 0.0 | 2.03 | 0.56 | 0.43 | -1.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 158288 | 20576 | 112 | 0 | 16 | 0 | 0 | logfile |
✔ | 6WH3 | 21667 | 2022-05-25 | 2020-04-07 | 2.96 | 3.01 | — | 3.0 | 0.011 | 1.09 | 60.0 | 0.08 | 9.53 | 0.01 | 2.204 | 31.73 | 0.68 | 3.9 | 96.1 | 0.0 | -1.75 | 0.74 | 0.87 | 5.56 | 3.0 | 0.003 | 0.62 | 0.0 | 0.05 | 16.13 | 0.00 | 2.083 | 15.35 | 3.35 | 5.8 | 94.2 | 0.0 | -0.80 | 0.62 | 0.71 | 0.88 | 4.60 | 157740 | 20040 | 120 | 0 | 60 | 0 | 0 | logfile |
✔ | 6FT6 | 4302 | 2022-05-25 | 2018-02-20 | 3.9 | 4.48 | — | 3.8 | 0.012 | 1.22 | 2.0 | 0.06 | 16.74 | 0.01 | 2.033 | 9.47 | 0.48 | 8.7 | 91.0 | 0.3 | -3.96 | 0.87 | 0.88 | 1.41 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 17.32 | 0.00 | 1.803 | 20.44 | 0.35 | 8.7 | 91.2 | 0.2 | -1.04 | 2.03 | 0.88 | 0.88 | 0.98 | 157395 | 10801 | 63 | 3341 | 19 | 0 | 0 | logfile |
✔ | 7ABZ | 11710 | 2022-05-25 | 2020-09-09 | 3.21 | 3.34 | 3.36 | 2.9 | 0.006 | 0.77 | 18.0 | 0.05 | 15.12 | 0.02 | 1.049 | 16.20 | 0.64 | 6.5 | 93.3 | 0.3 | -0.66 | 0.81 | 0.78 | 1.54 | 2.5 | 0.005 | 0.74 | 0.0 | 0.04 | 16.83 | 0.01 | 1.795 | 20.12 | 0.62 | 9.5 | 90.5 | 0.1 | -1.50 | 1.66 | 0.85 | 0.86 | 1.61 | 157227 | 6311 | 66 | 5017 | 194 | 0 | 0 | logfile |
✔ | 7oHX | 12912 | 2022-05-25 | 2021-05-11 | 3.3 | 4.37 | 3.24 | 2.9 | 0.005 | 0.49 | 0.0 | 0.03 | 16.09 | 0.00 | 1.859 | 5.35 | 0.81 | 3.7 | 96.3 | 0.0 | 1.38 | 0.79 | 0.67 | 0.81 | 3.0 | 0.009 | 0.74 | 1.0 | 0.04 | 17.39 | 0.01 | 1.806 | 17.58 | 0.26 | 7.5 | 92.5 | 0.1 | -0.75 | 1.41 | 0.83 | 0.76 | 1.41 | 157028 | 6076 | 39 | 1774 | 2 | 0 | 70039 | logfile |
✔ | 3J9Z | 6315 | 2022-05-25 | 2015-03-27 | 3.6 | 3.80 | — | 3.7 | 0.017 | 2.31 | 171.0 | 0.16 | 18.21 | 0.04 | 2.267 | 1.82 | 3.84 | 7.6 | 89.1 | 3.3 | -2.82 | 0.56 | 0.39 | 0.14 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.87 | 0.01 | 1.985 | 17.03 | 0.79 | 9.1 | 90.4 | 0.6 | -2.02 | 2.20 | 0.84 | 0.82 | 0.86 | 156714 | 7125 | 59 | 4717 | 1 | 0 | 0 | logfile |
✔ | 6Q97 | 4476 | 2022-05-25 | 2018-12-17 | 3.9 | 3.69 | — | 20.0 | 0.011 | 1.20 | 0.0 | 0.16 | 18.93 | 0.02 | 1.320 | 7.03 | 0.38 | 10.1 | 89.8 | 0.1 | -5.34 | 0.15 | 0.01 | 0.22 | 3.6 | 0.008 | 1.00 | 0.0 | 0.05 | 20.31 | 0.01 | 0.925 | 23.65 | 0.12 | 10.6 | 89.4 | 0.0 | -3.47 | 2.14 | 0.26 | 0.21 | 0.31 | 156609 | 6124 | 72 | 5051 | 441 | 2 | 0 | logfile |
✔ | 3JCT | 6615 | 2022-05-25 | 2016-03-09 | 3.08 | 3.17 | — | 3.2 | 0.007 | 1.09 | 7.0 | 0.09 | 19.87 | 0.00 | 1.197 | 4.32 | 8.22 | 7.2 | 90.3 | 2.5 | -3.22 | 0.59 | 0.77 | 2.31 | 3.1 | 0.003 | 0.68 | 0.0 | 0.04 | 18.42 | 0.00 | 1.964 | 9.71 | 0.55 | 6.6 | 92.7 | 0.7 | -0.75 | 1.51 | 0.69 | 0.83 | 1.86 | 156562 | 10503 | 64 | 3402 | 8 | 0 | 0 | logfile |
✔ | 6NUT | 0522 | 2022-05-25 | 2019-02-01 | 3.1 | 3.21 | 3.12 | 3.2 | 0.016 | 1.35 | 0.0 | 0.08 | 12.09 | 0.01 | 1.275 | 4.10 | 0.32 | 0.8 | 99.2 | 0.0 | -0.03 | 0.51 | 0.63 | 1.07 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 17.12 | 0.00 | 2.081 | 7.68 | 0.11 | 1.1 | 98.9 | 0.0 | 1.61 | 2.60 | 0.62 | 0.84 | 2.56 | 156150 | 18950 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 7Aoi | 11845 | 2022-05-25 | 2020-10-14 | 3.5 | 3.35 | 3.41 | 3.3 | 0.003 | 0.48 | 0.0 | 0.04 | 10.43 | 0.00 | 1.900 | 6.30 | 0.62 | 3.4 | 96.6 | 0.0 | 1.79 | 0.78 | 0.82 | 2.93 | 3.3 | 0.005 | 0.66 | 0.0 | 0.04 | 15.13 | 0.00 | 2.027 | 11.61 | 0.45 | 3.8 | 96.2 | 0.0 | 0.81 | 1.29 | 0.81 | 0.84 | 2.76 | 156070 | 17411 | 90 | 758 | 10 | 0 | 0 | logfile |
✔ | 6SSK | 10296 | 2022-05-25 | 2019-09-08 | 3.18 | 3.64 | — | 3.6 | 0.008 | 0.88 | 10.0 | 0.06 | 14.40 | 0.01 | 1.561 | 4.60 | 0.18 | 3.5 | 96.2 | 0.3 | -4.85 | 0.57 | 0.57 | 0.07 | 3.6 | 0.006 | 0.74 | 0.0 | 0.05 | 16.89 | 0.01 | 1.578 | 11.18 | 0.37 | 2.8 | 97.2 | 0.0 | -0.67 | 1.33 | 0.73 | 0.86 | 1.62 | 155900 | 19870 | 90 | 0 | 0 | 0 | 0 | logfile |
✔ | 5T0C | 8333 | 2022-05-04 | 2016-08-15 | 3.8 | 3.70 | — | 4.1 | 0.005 | 0.94 | 2.0 | 0.05 | 11.94 | 0.00 | 0.352 | 23.88 | 0.16 | 8.0 | 91.2 | 0.9 | -4.16 | 0.72 | 0.59 | 0.31 | 3.6 | 0.007 | 1.07 | 5.0 | 0.04 | 15.25 | 0.01 | 1.879 | 24.45 | 0.26 | 6.7 | 92.9 | 0.4 | -1.42 | 1.00 | 0.74 | 0.68 | 0.58 | 155574 | 19846 | 78 | 0 | 14 | 0 | 0 | logfile |