Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7DCo	30637	2023-04-27	2020-10-26	2.5	2.59	—	2.6	0.010	1.11	8.0	0.08	13.06	0.01	2.079	5.90	1.87	4.4	95.1	0.5	-3.91	0.53	0.65	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129875	15294	91	556	24	1714	0	logfile
✘	7UND	26621	2023-04-27	2022-04-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129454	8269	40	269	10	0	61541	logfile
✔	7B0N	11969	2023-04-27	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.45	14.97	0.01	0.019	3.79	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	3.2	0.005	0.86	0.0	0.13	16.23	0.00	1.907	9.08	0.17	5.4	94.6	0.0	-0.26	2.50	0.60	0.75	2.36	129439	8092	62	0	38	0	64087	logfile
✔	7LBM	23255	2023-04-27	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.82	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.2	0.006	0.89	0.0	0.05	14.76	0.01	1.897	20.39	0.01	8.8	91.0	0.1	-1.14	1.50	0.61	0.59	—	129277	15887	68	128	19	0	0	logfile
✔	6S05	10071	2023-04-26	2019-06-13	3.9	3.99	—	3.9	0.008	1.03	5.0	0.05	16.94	0.01	0.906	7.79	1.92	9.4	90.4	0.2	-4.72	0.82	0.84	1.89	3.9	0.007	0.75	0.0	0.04	16.93	0.01	2.007	16.08	1.03	10.0	89.9	0.0	-2.47	1.15	0.82	0.84	1.47	129144	6919	53	3423	218	0	0	logfile
✔	6oiG	20077	2023-04-26	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.00	6.0	0.05	18.66	0.01	1.416	32.12	0.74	13.7	86.2	0.1	-2.80	3.10	0.89	0.86	0.08	129140	6757	48	3522	116	0	0	logfile
✔	5GAK	3227	2023-04-26	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	7LiS	23384	2023-04-27	2021-01-27	2.96	3.25	—	3.2	0.008	0.79	0.0	0.06	14.46	0.00	2.214	2.81	3.45	3.5	96.5	0.0	0.22	0.75	0.88	4.54	3.2	0.003	0.51	0.0	0.04	16.57	0.00	2.171	3.00	1.80	3.1	96.9	0.0	0.66	0.34	0.77	0.89	3.19	128880	15660	60	0	60	0	0	logfile
✔	6N8M	0372	2023-04-26	2018-11-29	3.5	3.75	—	3.6	0.006	0.86	1.0	0.04	14.88	0.01	1.297	2.87	0.43	6.6	93.0	0.4	-4.51	0.81	0.88	3.49	3.6	0.007	0.70	0.0	0.04	16.00	0.00	2.020	8.66	0.65	8.4	91.4	0.2	-1.48	1.24	0.81	0.89	2.52	128867	6708	47	3482	302	0	0	logfile
✔	7YFZ	33802	2023-04-26	2022-07-09	3.19	2.87	2.92	2.9	0.006	0.86	3.0	0.05	12.31	0.01	1.749	18.46	0.20	6.2	93.6	0.2	-0.92	0.62	0.79	3.45	2.9	0.003	0.61	0.0	0.04	14.55	0.00	1.817	13.49	0.38	5.3	94.6	0.1	0.30	2.24	0.61	0.82	3.13	128850	8814	42	0	0	0	61470	logfile
✔	7ASP	11903	2023-04-26	2020-10-27	2.86	3.63	—	3.1	0.008	1.05	3.0	0.10	23.04	0.00	1.802	23.94	24.23	14.8	82.3	2.8	-5.21	0.88	0.86	1.55	3.1	0.007	0.76	0.0	0.04	20.82	0.00	1.967	17.31	6.10	10.3	89.6	0.1	-2.34	1.02	0.87	0.89	2.01	128828	4974	47	4284	0	0	0	logfile
✔	6QiK	4560	2023-04-26	2019-01-20	3.1	3.35	—	3.3	0.014	0.99	2.0	0.06	15.84	0.01	1.872	3.52	0.80	8.3	91.5	0.2	-4.17	0.84	0.86	3.77	3.3	0.005	0.59	0.0	0.04	15.98	0.00	2.062	7.45	0.50	6.0	94.0	0.0	-1.29	0.43	0.85	0.89	3.24	128569	6843	53	3423	217	0	0	logfile
✔	6RW4	10021	2023-04-26	2019-06-03	2.97	2.14	2.98	2.8	0.008	0.67	0.0	0.08	13.18	0.01	1.650	2.42	0.06	3.0	97.0	0.1	-2.57	0.85	0.84	4.78	2.8	0.004	0.65	0.0	0.04	14.61	0.01	1.675	3.45	0.88	1.9	98.0	0.0	1.04	1.98	0.88	0.88	4.29	128080	5920	47	955	85	59	59211	logfile
✔	7U05	26254	2023-04-27	2022-02-17	3.7	3.56	—	3.5	0.004	0.81	0.0	0.05	14.14	0.01	2.019	4.02	0.07	9.7	90.2	0.1	-1.55	0.51	0.72	2.03	3.5	0.004	0.62	0.0	0.04	16.50	0.00	1.833	12.03	0.77	10.6	89.3	0.1	-1.25	0.57	0.53	0.74	2.00	127996	7632	32	0	722	0	62402	logfile
✔	7ZS5	14926	2023-04-26	2022-05-06	3.2	3.53	3.32	3.3	0.002	0.55	0.0	0.03	16.11	0.00	1.329	12.45	0.02	2.5	97.1	0.4	-1.60	0.84	0.78	1.80	3.3	0.008	0.84	0.0	0.05	17.43	0.01	1.851	20.60	1.03	9.6	90.0	0.4	-1.91	0.41	0.86	0.82	1.68	127849	6416	50	3603	24	0	0	logfile
✔	7oHU	12909	2023-04-26	2021-05-11	3.7	4.68	3.77	3.4	0.008	0.53	1.0	0.03	16.12	0.00	1.811	5.44	0.45	3.5	96.5	0.0	1.01	0.83	0.76	1.33	3.4	0.007	0.58	1.0	0.03	17.35	0.00	1.751	15.03	0.22	7.3	92.6	0.0	-0.57	1.32	0.85	0.81	1.56	127652	4202	29	1840	2	0	54773	logfile
✔	7WPS	32690	2023-04-27	2022-01-24	4.32	4.69	—	4.2	0.007	0.92	0.0	0.06	10.45	0.01	1.790	3.99	0.35	10.0	89.8	0.2	-4.55	0.72	0.47	—	4.1	0.003	0.72	0.0	0.04	11.70	0.00	2.104	14.22	0.12	7.5	92.5	0.0	-1.91	2.69	0.91	0.80	—	127624	16646	56	0	98	0	0	logfile
✔	7LiM	23383	2023-04-26	2021-01-27	2.75	2.92	—	2.9	0.007	1.05	60.0	0.06	15.45	0.01	2.436	3.47	3.49	3.5	96.5	0.0	-2.97	0.74	0.84	3.83	3.0	0.005	0.87	0.0	0.05	18.05	0.01	2.272	3.74	2.40	3.8	96.2	0.0	-2.46	0.30	0.75	0.86	2.97	127440	15480	60	0	60	0	0	logfile
✔	7Lii	23379	2023-04-26	2021-01-27	3.55	3.83	—	3.7	0.007	0.90	0.0	0.06	13.86	0.00	2.299	5.65	0.87	9.9	90.1	0.0	-2.72	0.82	0.84	2.16	3.7	0.006	0.75	0.0	0.05	15.30	0.00	2.260	3.23	0.42	10.3	89.7	0.0	-2.13	0.35	0.83	0.84	1.83	127320	15480	60	0	60	0	0	logfile
✔	7LiT	23385	2023-04-26	2021-01-27	2.53	2.69	—	2.8	0.008	0.76	0.0	0.05	13.58	0.00	2.309	1.69	0.44	3.9	96.1	0.0	0.35	0.71	0.85	4.23	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.168	2.50	1.36	3.3	96.7	0.0	0.89	1.75	0.73	0.88	3.70	126840	15480	60	0	60	0	0	logfile

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