Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J1Q	5415	2022-05-01	2012-04-30	4.5	4.62	—	4.6	0.009	1.72	0.0	0.10	17.68	0.01	2.064	63.50	14.85	8.2	89.9	1.9	-4.91	0.74	0.64	—	4.6	0.005	0.79	0.0	0.04	14.10	0.01	2.010	18.75	0.22	5.9	94.1	0.0	-1.75	1.30	0.81	0.77	—	248160	31020	60	0	0	0	0	logfile
✔	6PWA	20502	2022-05-01	2019-07-22	3.3	3.75	3.32	3.7	0.010	0.82	0.0	0.05	12.81	0.01	2.276	2.94	3.91	4.3	95.7	0.0	-3.13	0.73	0.90	4.68	3.7	0.003	0.53	0.0	0.04	14.41	0.00	2.102	4.44	0.13	2.8	97.2	0.0	-0.71	0.45	0.68	0.90	3.83	248160	31140	60	0	0	0	0	logfile
✔	6U20	20615	2022-05-01	2019-08-18	3.3	4.23	3.54	4.1	0.009	0.83	0.0	0.05	13.51	0.01	2.254	2.45	5.30	4.0	96.0	0.0	-3.26	0.72	0.72	0.76	4.0	0.005	0.75	0.0	0.04	16.30	0.00	2.026	12.85	0.54	4.2	95.8	0.0	-1.22	0.83	0.68	0.84	3.00	248160	31140	60	0	0	0	0	logfile
✔	6U2V	20626	2022-05-01	2019-08-20	3.6	4.12	3.88	4.0	0.008	0.74	0.0	0.04	14.57	0.00	2.172	14.63	3.09	5.4	94.6	0.0	-3.59	0.61	0.80	2.16	4.0	0.005	0.70	0.0	0.04	16.80	0.00	2.003	14.71	0.58	5.0	95.0	0.0	-1.48	0.76	0.64	0.85	2.96	248160	31140	60	0	0	0	0	logfile
✔	6UBM	20710	2022-05-01	2019-09-12	3.3	4.23	3.63	4.1	0.007	0.84	0.0	0.05	9.74	0.01	0.759	48.25	0.22	4.0	96.0	0.0	-3.01	0.70	0.66	0.37	4.0	0.006	0.79	0.0	0.05	16.25	0.01	1.982	16.96	0.63	4.6	95.4	0.0	-1.75	1.99	0.72	0.85	2.81	248160	31140	60	0	0	0	0	logfile
✔	6o9R	0663	2022-05-01	2019-03-14	2.75	3.02	—	3.0	0.011	0.87	0.0	0.06	9.38	0.01	2.204	10.63	0.22	1.7	98.3	0.0	-1.28	0.77	0.88	6.11	3.0	0.004	0.61	0.0	0.04	14.19	0.00	2.154	7.88	1.83	2.3	97.7	0.0	-0.04	0.54	0.76	0.90	5.54	247980	31200	60	0	0	0	0	logfile
✘	7MTP	23993	2022-05-01	2021-05-13	2.79	3.30	—	3.4	0.011	1.20	180.0	0.07	9.77	0.01	1.746	18.64	0.22	2.9	96.9	0.2	-2.75	0.67	0.80	4.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	247860	31080	60	0	0	0	0	logfile
✔	3J9M	2876	2022-05-25	2015-02-08	3.5	3.59	3.50	3.5	0.007	1.35	38.0	0.09	19.29	0.01	1.242	5.74	9.06	8.2	89.4	2.4	-1.72	0.66	0.76	1.82	3.5	0.006	0.82	3.0	0.04	18.30	0.01	1.706	13.73	0.37	6.6	92.8	0.6	0.04	0.88	0.76	0.83	1.45	158384	12902	97	2454	309	0	0	logfile
✘	7o3Y	12712	2022-05-25	2021-04-03	3.8	5.36	4.02	6.6	0.017	1.23	0.0	0.07	17.45	0.01	1.232	13.83	1.39	2.3	97.7	0.0	2.03	0.56	0.43	-1.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	158288	20576	112	0	16	0	0	logfile
✔	6WH3	21667	2022-05-25	2020-04-07	2.96	3.01	—	3.0	0.011	1.09	60.0	0.08	9.53	0.01	2.204	31.73	0.68	3.9	96.1	0.0	-1.75	0.74	0.87	5.56	3.0	0.003	0.62	0.0	0.05	16.13	0.00	2.083	15.35	3.35	5.8	94.2	0.0	-0.80	0.62	0.71	0.88	4.60	157740	20040	120	0	60	0	0	logfile
✔	6FT6	4302	2022-05-25	2018-02-20	3.9	4.48	—	3.8	0.012	1.22	2.0	0.06	16.74	0.01	2.033	9.47	0.48	8.7	91.0	0.3	-3.96	0.87	0.88	1.41	3.9	0.004	0.73	0.0	0.04	17.32	0.00	1.803	20.44	0.35	8.7	91.2	0.2	-1.04	2.03	0.88	0.88	0.98	157395	10801	63	3341	19	0	0	logfile
✔	7ABZ	11710	2022-05-25	2020-09-09	3.21	3.34	3.36	2.9	0.006	0.77	18.0	0.05	15.12	0.02	1.049	16.20	0.64	6.5	93.3	0.3	-0.66	0.81	0.78	1.54	2.5	0.005	0.74	0.0	0.04	16.83	0.01	1.795	20.12	0.62	9.5	90.5	0.1	-1.50	1.66	0.85	0.86	1.61	157227	6311	66	5017	194	0	0	logfile
✔	7oHX	12912	2022-05-25	2021-05-11	3.3	4.37	3.24	2.9	0.005	0.49	0.0	0.03	16.09	0.00	1.859	5.35	0.81	3.7	96.3	0.0	1.38	0.79	0.67	0.81	3.0	0.009	0.74	1.0	0.04	17.39	0.01	1.806	17.58	0.26	7.5	92.5	0.1	-0.75	1.41	0.83	0.76	1.41	157028	6076	39	1774	2	0	70039	logfile
✔	3J9Z	6315	2022-05-25	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.82	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.003	0.72	0.0	0.04	16.87	0.01	1.985	17.03	0.79	9.1	90.4	0.6	-2.02	2.20	0.84	0.82	0.86	156714	7125	59	4717	1	0	0	logfile
✔	6Q97	4476	2022-05-25	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	7.03	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.008	1.00	0.0	0.05	20.31	0.01	0.925	23.65	0.12	10.6	89.4	0.0	-3.47	2.14	0.26	0.21	0.31	156609	6124	72	5051	441	2	0	logfile
✔	3JCT	6615	2022-05-25	2016-03-09	3.08	3.17	—	3.2	0.007	1.09	7.0	0.09	19.87	0.00	1.197	4.32	8.22	7.2	90.3	2.5	-3.22	0.59	0.77	2.31	3.1	0.003	0.68	0.0	0.04	18.42	0.00	1.964	9.71	0.55	6.6	92.7	0.7	-0.75	1.51	0.69	0.83	1.86	156562	10503	64	3402	8	0	0	logfile
✔	6NUT	0522	2022-05-25	2019-02-01	3.1	3.21	3.12	3.2	0.016	1.35	0.0	0.08	12.09	0.01	1.275	4.10	0.32	0.8	99.2	0.0	-0.03	0.51	0.63	1.07	3.2	0.003	0.54	0.0	0.04	17.12	0.00	2.081	7.68	0.11	1.1	98.9	0.0	1.61	2.60	0.62	0.84	2.56	156150	18950	100	300	0	0	0	logfile
✔	7Aoi	11845	2022-05-25	2020-10-14	3.5	3.35	3.41	3.3	0.003	0.48	0.0	0.04	10.43	0.00	1.900	6.30	0.62	3.4	96.6	0.0	1.79	0.78	0.82	2.93	3.3	0.005	0.66	0.0	0.04	15.13	0.00	2.027	11.61	0.45	3.8	96.2	0.0	0.81	1.29	0.81	0.84	2.76	156070	17411	90	758	10	0	0	logfile
✔	6SSK	10296	2022-05-25	2019-09-08	3.18	3.64	—	3.6	0.008	0.88	10.0	0.06	14.40	0.01	1.561	4.60	0.18	3.5	96.2	0.3	-4.85	0.57	0.57	0.07	3.6	0.006	0.74	0.0	0.05	16.89	0.01	1.578	11.18	0.37	2.8	97.2	0.0	-0.67	1.33	0.73	0.86	1.62	155900	19870	90	0	0	0	0	logfile
✔	5T0C	8333	2022-05-04	2016-08-15	3.8	3.70	—	4.1	0.005	0.94	2.0	0.05	11.94	0.00	0.352	23.88	0.16	8.0	91.2	0.9	-4.16	0.72	0.59	0.31	3.6	0.007	1.07	5.0	0.04	15.25	0.01	1.879	24.45	0.26	6.7	92.9	0.4	-1.42	1.00	0.74	0.68	0.58	155574	19846	78	0	14	0	0	logfile

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