Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o8W	0656	2023-07-15	2019-03-12	3.53	4.07	—	3.6	0.011	1.07	2.0	0.05	15.84	0.01	2.100	5.95	0.50	14.6	85.2	0.2	-4.56	0.80	0.75	1.33	3.6	0.006	0.72	1.0	0.04	16.52	0.01	1.993	15.94	0.92	12.9	86.9	0.1	-2.58	1.66	0.87	0.84	1.06	139953	5206	55	4623	4	0	0	logfile
✔	7P7U	13245	2023-07-15	2021-07-20	3.1	3.56	3.06	2.0	0.004	0.52	0.0	0.05	13.97	0.00	1.724	6.20	0.42	2.6	97.4	0.1	1.02	0.89	0.90	3.54	2.0	0.006	0.60	0.0	0.04	14.50	0.00	1.821	10.62	0.36	2.9	97.1	0.0	0.84	0.38	0.89	0.91	3.18	139826	5337	64	4549	344	0	0	logfile
✔	7M4Y	23670	2023-07-15	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.28	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.006	0.83	0.0	0.05	16.57	0.01	1.633	4.85	3.93	3.2	96.7	0.1	0.24	0.30	0.79	0.77	3.86	139817	5511	80	4453	200	1044	0	logfile
✔	6AB5	6999	2023-07-15	2018-07-20	3.7	3.79	—	3.7	0.007	0.96	6.0	0.06	11.27	0.01	1.686	24.89	0.75	5.6	94.4	0.0	-3.80	0.85	0.86	3.48	3.7	0.007	0.66	0.0	0.05	14.07	0.00	2.100	12.10	0.29	7.2	92.8	0.0	-2.04	0.62	0.87	0.87	2.34	139740	18180	60	0	0	0	0	logfile
✔	7AM2	11821	2023-07-15	2020-10-07	3.4	3.52	—	3.4	0.009	0.95	43.0	0.07	20.01	0.01	1.157	23.90	8.65	15.0	84.3	0.7	-5.47	0.64	0.76	1.98	3.4	0.007	0.82	1.0	0.05	19.90	0.01	1.363	20.07	0.72	12.6	87.2	0.2	-3.08	1.82	0.64	0.78	1.80	139523	15384	80	839	42	0	0	logfile
✘	6LQM	0948	2023-07-15	2020-01-14	3.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139464	7108	53	3808	251	0	0	logfile
✔	7M4X	23669	2023-07-15	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✘	6DQS	7983	2023-07-15	2018-06-11	4.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139314	8750	8	0	8	0	69639	logfile
✘	6DRA	7991	2023-07-14	2018-06-11	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139084	8764	8	0	12	0	69544	logfile
✘	6DR2	7988	2023-07-14	2018-06-11	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139084	8764	8	0	12	0	69544	logfile
✔	7UVZ	26821	2023-07-14	2022-05-02	2.21	2.55	—	2.3	0.010	0.65	1.0	0.04	15.50	0.02	1.876	4.65	2.03	2.1	97.7	0.2	0.93	0.92	0.93	4.69	2.3	0.008	0.74	0.0	0.05	15.64	0.01	1.737	4.58	2.85	2.9	97.0	0.2	0.89	0.20	0.92	0.94	4.69	138943	5512	59	4453	13	5	0	logfile
✔	7UVY	26820	2023-07-14	2022-05-02	2.39	2.77	—	2.6	0.011	0.70	0.0	0.04	15.79	0.02	1.926	4.93	2.41	2.5	97.2	0.2	0.67	0.92	0.93	4.40	2.6	0.006	0.67	0.0	0.04	15.67	0.01	1.760	4.88	2.92	3.0	96.8	0.2	0.70	0.17	0.92	0.94	4.27	138881	5512	60	4447	14	5	0	logfile
✘	6DQN	7981	2023-07-14	2018-06-11	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138876	8744	8	0	8	0	69396	logfile
✘	6DRC	7994	2023-07-14	2018-06-11	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138860	8744	8	0	16	0	69384	logfile
✔	7P48	13191	2023-07-14	2021-07-09	2.9	2.80	2.94	2.8	0.020	1.48	19.0	0.07	17.99	0.01	1.822	12.33	0.92	13.5	86.2	0.4	-5.47	0.77	0.78	2.69	2.8	0.006	0.81	1.0	0.05	17.10	0.01	1.950	6.67	3.36	8.0	91.9	0.1	-2.12	0.55	0.80	0.81	2.67	138826	5925	57	4329	7	0	0	logfile
✔	6R84	4751	2023-07-14	2019-03-31	3.6	3.57	—	3.5	0.009	1.15	1.0	0.06	16.91	0.01	1.501	5.84	0.51	8.2	91.4	0.4	-3.93	0.79	0.81	2.51	3.5	0.004	0.72	0.0	0.04	17.21	0.00	1.885	15.46	0.61	8.9	90.9	0.2	-1.60	1.97	0.80	0.82	1.71	138804	7644	51	3671	45	0	0	logfile
✔	7U9Z	26410	2023-07-15	2022-03-11	3.29	3.51	—	1.9	0.003	0.76	4.0	0.04	15.16	0.01	1.938	11.72	1.19	4.6	95.3	0.1	0.57	0.86	0.79	2.26	1.9	0.003	0.64	0.0	0.04	15.69	0.00	2.140	11.14	0.11	4.5	95.4	0.1	0.89	1.01	0.87	0.85	2.84	138688	17332	12	0	20	0	0	logfile
✔	7UA1	26412	2023-07-15	2022-03-11	2.99	3.02	—	1.9	0.003	0.62	0.0	0.04	14.11	0.00	1.785	8.77	0.29	3.3	96.6	0.1	1.20	0.85	0.80	2.97	1.9	0.003	0.67	0.0	0.04	15.27	0.00	2.125	9.07	0.44	4.0	96.0	0.1	1.12	0.44	0.87	0.84	3.34	138680	17324	12	0	16	0	0	logfile
✔	7UA9	26416	2023-07-15	2022-03-11	3.59	3.94	—	2.0	0.010	0.88	4.0	0.04	14.73	0.01	1.935	14.89	1.82	3.1	96.8	0.1	0.41	0.85	0.79	2.17	1.9	0.010	0.66	0.0	0.04	15.06	0.00	1.895	12.06	0.09	2.9	97.0	0.0	1.15	0.98	0.86	0.81	2.32	138656	17324	12	0	20	0	0	logfile
✔	7U9R	26407	2023-07-14	2022-03-11	3.69	3.91	—	2.1	0.003	0.85	8.0	0.04	15.09	0.01	1.708	13.03	2.45	2.4	97.5	0.1	1.06	0.80	0.69	1.99	2.0	0.006	0.65	0.0	0.04	15.16	0.00	2.100	11.51	0.05	3.3	96.6	0.1	1.33	0.51	0.82	0.80	2.64	138656	17324	12	0	20	0	0	logfile

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