Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HR7	34962	2023-11-17	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	7BoJ	30130	2023-11-17	2020-03-19	2.5	2.54	2.42	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.35	0.00	2.4	97.6	0.0	-2.48	0.77	0.86	4.26	2.5	0.005	0.67	0.0	0.05	15.81	0.00	2.132	7.61	2.17	2.2	97.8	0.0	1.73	1.86	0.78	0.88	4.15	121500	15900	60	0	0	0	0	logfile
✔	5TA3	8377	2023-11-17	2016-09-09	4.4	4.71	4.62	4.5	0.004	0.90	0.0	0.05	9.97	0.01	1.374	5.28	0.54	10.8	89.1	0.1	-4.86	0.81	0.78	—	4.5	0.004	0.74	0.0	0.04	11.98	0.00	2.077	17.98	0.00	12.1	87.8	0.1	-1.58	0.87	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAM	8379	2023-11-16	2016-09-10	4.3	4.53	4.46	4.3	0.005	0.92	4.0	0.05	9.87	0.01	1.373	5.48	0.35	10.4	89.5	0.2	-4.88	0.81	0.79	—	4.3	0.005	0.79	0.0	0.04	12.08	0.00	2.076	18.45	0.00	12.5	87.3	0.1	-1.92	1.52	0.82	0.81	—	121456	13500	12	0	3720	0	0	logfile
✔	5T9V	8376	2023-11-16	2016-09-09	4.4	4.79	4.75	4.5	0.004	0.90	4.0	0.05	9.94	0.01	1.374	5.64	0.54	10.5	89.3	0.2	-4.84	0.81	0.78	—	4.5	0.003	0.72	0.0	0.04	11.70	0.00	2.114	16.07	0.00	10.7	89.1	0.1	-1.35	0.84	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAL	8378	2023-11-17	2016-09-10	4.3	4.43	4.52	4.3	0.005	0.92	0.0	0.05	10.13	0.01	1.373	5.27	0.62	10.5	89.3	0.1	-5.03	0.79	0.78	—	4.2	0.003	0.73	0.0	0.04	11.96	0.00	2.060	13.63	0.01	11.4	88.4	0.1	-1.55	0.84	0.80	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAQ	8382	2023-11-17	2016-09-10	4.1	4.24	4.25	4.1	0.005	0.97	0.0	0.05	10.16	0.01	1.373	4.58	0.43	10.9	88.9	0.2	-5.26	0.76	0.78	—	4.1	0.005	0.79	0.0	0.04	12.30	0.00	2.046	14.49	0.00	12.5	87.4	0.1	-1.92	1.94	0.77	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAN	8380	2023-11-17	2016-09-10	4.3	4.50	4.44	4.3	0.005	0.91	4.0	0.05	9.88	0.01	1.372	5.67	0.47	10.4	89.4	0.2	-4.91	0.80	0.79	—	4.3	0.004	0.76	0.0	0.04	12.20	0.00	2.099	15.22	0.01	11.3	88.6	0.1	-1.53	1.51	0.81	0.81	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAP	8381	2023-11-16	2016-09-10	4.4	4.55	4.56	4.4	0.004	0.88	4.0	0.05	9.99	0.01	1.373	4.46	0.54	9.9	89.9	0.2	-4.98	0.78	0.77	—	4.4	0.004	0.77	0.0	0.04	12.22	0.00	1.982	15.17	0.02	11.9	88.1	0.1	-1.73	0.87	0.78	0.79	—	121452	13500	12	0	3716	0	0	logfile
✘	5TAV	8386	2023-11-16	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	5TAT	8384	2023-11-16	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.77	0.01	1.373	4.75	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✔	5XXB	6778	2023-11-16	2017-07-03	3.17	3.22	—	3.2	0.006	1.07	5.0	0.09	17.43	0.00	1.261	4.91	4.74	7.1	91.3	1.5	-3.54	0.65	0.77	2.19	3.2	0.006	0.72	0.0	0.04	16.77	0.01	2.019	8.94	0.86	6.9	92.6	0.5	-1.18	0.63	0.81	0.87	1.82	121433	6215	44	3352	0	0	0	logfile
✔	5TAW	8387	2023-11-16	2016-09-10	4.4	4.49	4.56	4.2	0.004	0.86	0.0	0.05	9.82	0.01	1.373	5.05	0.39	10.3	89.5	0.2	-4.87	0.79	0.75	—	4.2	0.005	0.79	0.0	0.04	11.93	0.00	2.017	18.09	0.00	13.0	86.9	0.1	-1.94	1.99	0.80	0.79	—	121276	13500	12	0	3712	0	0	logfile
✘	5TAY	8389	2023-11-16	2016-09-10	4.6	4.71	4.77	4.5	0.004	0.86	4.0	0.05	9.86	0.01	1.374	4.89	0.46	10.4	89.4	0.2	-4.90	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121276	13500	12	0	3712	0	0	logfile
✔	5TAZ	8390	2023-11-16	2016-09-10	4.3	4.46	4.86	4.3	0.004	0.86	4.0	0.05	9.92	0.01	1.373	4.79	0.58	10.2	89.6	0.2	-5.04	0.74	0.73	—	4.3	0.005	0.81	0.0	0.04	12.08	0.00	2.051	18.58	0.00	12.9	86.9	0.2	-2.20	0.91	0.76	0.77	—	121276	13500	12	0	3712	0	0	logfile
✔	6QDV	4525	2023-11-16	2019-01-03	3.3	3.34	—	3.3	0.008	1.15	4.0	0.08	15.82	0.01	0.962	10.58	2.45	5.0	94.6	0.3	-3.15	0.53	0.72	2.12	3.3	0.008	0.71	0.0	0.05	17.14	0.00	1.909	16.02	0.45	5.1	94.8	0.1	0.01	1.46	0.52	0.67	1.96	121152	14611	60	348	18	0	0	logfile
✔	8DN9	27558	2023-11-16	2022-07-11	2.9	3.17	3.07	3.2	0.003	0.65	0.0	0.04	14.88	0.00	2.218	6.34	0.45	4.1	95.9	0.0	-0.18	0.79	0.84	2.93	3.2	0.003	0.60	0.0	0.04	16.81	0.00	2.275	4.99	0.86	3.9	96.1	0.0	0.78	0.48	0.81	0.86	3.24	121080	15840	60	0	0	0	0	logfile
✔	7BCV	12144	2023-11-16	2020-12-21	2.28	2.56	—	2.5	0.008	0.96	0.0	0.06	14.30	0.01	2.371	4.21	0.47	3.0	97.0	0.0	-2.14	0.85	0.88	5.31	2.5	0.005	0.61	0.0	0.05	16.39	0.00	2.186	6.34	1.28	3.5	96.5	0.0	0.60	0.50	0.81	0.90	5.07	120960	15960	60	0	0	0	0	logfile
✔	5T15	8342	2023-11-16	2016-08-17	3.6	3.80	3.88	3.7	0.007	1.01	0.0	0.05	10.37	0.01	1.373	4.08	0.45	11.5	88.2	0.3	-5.71	0.73	0.78	2.03	3.7	0.003	0.73	0.0	0.04	13.98	0.00	2.102	8.84	0.26	10.0	89.8	0.2	-1.55	1.47	0.74	0.79	1.03	120796	13508	12	0	3608	0	0	logfile
✔	7AS4	11888	2023-11-16	2020-10-26	4.13	7.60	4.43	3.3	0.013	2.07	101.0	0.12	16.75	0.01	1.851	7.04	3.73	5.2	94.7	0.1	-1.41	0.79	0.59	—	3.2	0.004	0.72	0.0	0.04	14.57	0.00	2.025	16.07	0.00	4.3	95.7	0.0	0.26	0.80	0.88	0.70	—	120779	14997	47	14	0	0	0	logfile

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