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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7V7i | 31772 | 2022-12-22 | 2021-08-21 | 3.3 | 4.09 | — | 3.8 | 0.005 | 0.59 | 0.0 | 0.05 | 13.45 | 0.00 | 2.128 | 8.36 | 0.00 | 5.4 | 94.5 | 0.2 | -0.23 | 0.86 | 0.85 | 2.37 | 3.8 | 0.004 | 0.57 | 0.0 | 0.04 | 14.85 | 0.00 | 1.991 | 7.32 | 0.18 | 5.6 | 94.3 | 0.1 | -0.25 | 0.31 | 0.87 | 0.87 | 1.93 | 51072 | 6228 | 84 | 0 | 174 | 0 | 0 | logfile |
✔ | 7V7J | 31773 | 2022-12-22 | 2021-08-21 | 3.4 | 4.17 | — | 3.8 | 0.004 | 0.56 | 0.0 | 0.05 | 13.55 | 0.00 | 2.144 | 9.66 | 0.00 | 6.1 | 93.8 | 0.1 | -0.39 | 0.86 | 0.85 | 2.06 | 3.8 | 0.004 | 0.57 | 0.0 | 0.04 | 14.98 | 0.00 | 2.137 | 8.93 | 0.18 | 5.9 | 94.0 | 0.1 | -0.39 | 0.31 | 0.87 | 0.87 | 1.85 | 51072 | 6228 | 84 | 0 | 174 | 0 | 0 | logfile |
✘ | 6TRD | 10559 | 2022-12-19 | 2019-12-18 | 3.16 | 3.25 | — | 3.2 | 0.010 | 1.27 | 0.0 | 0.07 | 19.84 | 0.02 | 1.222 | 8.27 | 4.75 | 8.8 | 91.2 | 0.0 | -3.67 | 0.63 | 0.69 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74991 | 6849 | 84 | 0 | 402 | 51 | 0 | logfile |
✔ | 6QC3 | 4495 | 2022-12-17 | 2018-12-26 | 4.2 | 4.28 | 4.21 | 4.2 | 0.010 | 1.32 | 1.0 | 0.85 | 12.07 | 0.01 | 1.873 | 8.94 | 0.75 | 11.7 | 88.1 | 0.1 | -3.94 | 0.67 | 0.75 | — | 4.2 | 0.007 | 1.49 | 0.0 | 0.26 | 13.46 | 0.01 | 1.333 | 19.21 | 0.05 | 10.1 | 89.9 | 0.0 | -1.21 | 1.75 | 0.68 | 0.77 | — | 96897 | 12010 | 84 | 0 | 77 | 0 | 0 | logfile |
✘ | 8DVD | 27735 | 2022-12-18 | 2022-07-28 | 4.12 | 4.71 | 4.34 | 4.3 | 0.004 | 0.56 | 0.0 | 0.05 | 13.05 | 0.00 | 1.932 | 5.05 | 0.69 | 8.0 | 91.9 | 0.1 | -0.76 | 0.79 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20804 | 2137 | 83 | 0 | 302 | 0 | 0 | logfile |
✔ | 6QC2 | 4494 | 2022-12-17 | 2018-12-26 | 4.2 | 4.29 | 4.30 | 4.2 | 0.009 | 1.24 | 1.0 | 0.85 | 11.75 | 0.01 | 1.942 | 8.36 | 0.57 | 11.4 | 88.5 | 0.1 | -3.91 | 0.69 | 0.76 | — | 4.2 | 0.007 | 1.48 | 0.0 | 0.26 | 13.44 | 0.01 | 1.822 | 17.94 | 0.04 | 9.4 | 90.6 | 0.0 | -1.27 | 0.99 | 0.70 | 0.78 | — | 96938 | 12000 | 83 | 0 | 93 | 0 | 0 | logfile |
✔ | 6QBX | 4493 | 2022-12-17 | 2018-12-24 | 4.2 | 4.27 | 4.22 | 4.2 | 0.007 | 1.16 | 0.0 | 0.85 | 11.43 | 0.01 | 1.997 | 7.87 | 0.40 | 11.2 | 88.6 | 0.1 | -3.98 | 0.64 | 0.71 | — | 4.2 | 0.007 | 1.46 | 0.0 | 0.26 | 13.55 | 0.01 | 1.851 | 17.82 | 0.04 | 9.4 | 90.6 | 0.0 | -1.25 | 1.01 | 0.65 | 0.74 | — | 97049 | 12043 | 83 | 0 | 73 | 0 | 0 | logfile |
✔ | 7JSV | 22460 | 2022-12-14 | 2020-08-16 | 3.9 | 3.98 | — | 4.0 | 0.020 | 2.10 | 0.0 | 0.10 | 13.46 | 0.01 | 2.348 | 6.75 | 0.00 | 0.0 | 100.0 | 0.0 | 1.16 | 0.61 | 0.80 | 2.43 | 4.0 | 0.003 | 0.79 | 0.0 | 0.04 | 15.99 | 0.00 | 2.123 | 12.88 | 0.38 | 1.0 | 99.0 | 0.0 | 0.10 | 0.90 | 0.64 | 0.83 | 2.63 | 22140 | 2706 | 82 | 0 | 41 | 0 | 0 | logfile |
✘ | 6CDE | 7459 | 2022-12-18 | 2018-02-08 | 3.8 | 4.08 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.10 | 9.91 | 0.01 | 1.655 | 8.88 | 0.21 | 6.0 | 94.0 | 0.0 | -3.29 | 0.77 | 0.84 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32973 | 3846 | 81 | 0 | 222 | 0 | 0 | logfile |
✘ | 6CDi | 7460 | 2022-12-18 | 2018-02-08 | 3.6 | 3.90 | — | 3.6 | 0.007 | 0.90 | 0.0 | 0.10 | 9.66 | 0.01 | 1.461 | 7.90 | 0.45 | 5.9 | 94.0 | 0.1 | -3.25 | 0.84 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32763 | 3843 | 81 | 0 | 210 | 0 | 0 | logfile |
✘ | 6QC4 | 4496 | 2022-12-19 | 2018-12-26 | 4.6 | 4.73 | 4.64 | 4.6 | 0.006 | 1.11 | 0.0 | 0.85 | 11.15 | 0.01 | 1.949 | 8.13 | 0.38 | 10.8 | 89.0 | 0.1 | -3.76 | 0.73 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96705 | 12008 | 81 | 0 | 85 | 0 | 0 | logfile |
✔ | 7CBL | 30335 | 2022-12-19 | 2020-06-12 | 2.8 | 3.16 | — | 3.1 | 0.006 | 0.59 | 0.0 | 0.05 | 14.82 | 0.00 | 2.161 | 5.24 | 5.25 | 3.0 | 96.8 | 0.2 | -2.55 | 0.78 | 0.87 | 2.70 | 3.1 | 0.004 | 0.58 | 0.0 | 0.05 | 16.34 | 0.00 | 2.143 | 6.01 | 4.46 | 3.1 | 96.9 | 0.0 | -0.49 | 0.42 | 0.74 | 0.87 | 2.58 | 99242 | 13364 | 78 | 0 | 26 | 0 | 0 | logfile |
✘ | 7F4V | 31455 | 2022-12-19 | 2021-06-21 | 2.04 | 1.80 | — | 2.0 | 0.025 | 2.42 | 0.0 | 0.08 | 19.55 | 0.03 | 1.203 | 4.76 | 2.78 | 3.0 | 96.9 | 0.1 | -2.15 | 0.70 | 0.83 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67641 | 6336 | 78 | 0 | 453 | 402 | 0 | logfile |
✔ | 6oSY | 20189 | 2022-12-16 | 2019-05-02 | 4.3 | 4.54 | 4.35 | 4.4 | 0.014 | 1.44 | 0.0 | 0.08 | 15.94 | 0.01 | 2.290 | 6.39 | 2.64 | 9.6 | 90.4 | 0.0 | -3.58 | 0.77 | 0.83 | — | 4.4 | 0.004 | 0.79 | 0.0 | 0.05 | 14.07 | 0.01 | 2.143 | 14.55 | 0.00 | 8.0 | 92.0 | 0.0 | -1.77 | 1.28 | 0.77 | 0.82 | — | 32463 | 3834 | 78 | 0 | 186 | 0 | 0 | logfile |
✔ | 4Ci0 | 2513 | 2022-12-16 | 2013-12-05 | 3.36 | 3.44 | — | 3.4 | 0.014 | 1.93 | 26.0 | 1.74 | 23.74 | 0.03 | 1.915 | 124.97 | 39.11 | 3.4 | 96.5 | 0.1 | 1.78 | 0.67 | 0.66 | 0.30 | 3.4 | 0.015 | 2.76 | 0.0 | 0.54 | 18.66 | 0.00 | 1.979 | 26.09 | 0.79 | 4.9 | 95.1 | 0.0 | -0.73 | 1.81 | 0.78 | 0.87 | 1.60 | 90428 | 11609 | 78 | 0 | 117 | 0 | 0 | logfile |
✔ | 7QCo | 13898 | 2022-12-16 | 2021-11-24 | 3.7 | 3.89 | 3.86 | 3.7 | 0.006 | 0.93 | 0.0 | 0.05 | 21.59 | 0.02 | 1.932 | 24.35 | 9.61 | 13.9 | 86.0 | 0.2 | -4.15 | 0.72 | 0.69 | 0.82 | 3.7 | 0.003 | 0.79 | 0.0 | 0.05 | 19.14 | 0.01 | 1.454 | 19.09 | 0.59 | 10.0 | 90.0 | 0.0 | -1.49 | 0.80 | 0.73 | 0.72 | 0.62 | 90396 | 8812 | 78 | 0 | 462 | 0 | 0 | logfile |
✘ | 7S3D | 24821 | 2022-12-19 | 2021-09-05 | 2.91 | 3.04 | — | 3.0 | 0.031 | 3.31 | 3.0 | 0.10 | 19.68 | 0.02 | 1.207 | 15.80 | 2.64 | 6.0 | 93.1 | 0.9 | -2.45 | 0.73 | 0.88 | 4.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75150 | 7074 | 78 | 0 | 417 | 333 | 0 | logfile |
✔ | 6NF2 | 9359 | 2022-12-16 | 2018-12-18 | 3.7 | 4.23 | 3.72 | 4.0 | 0.008 | 1.16 | 0.0 | 0.06 | 14.97 | 0.01 | 2.242 | 6.32 | 0.45 | 6.2 | 93.7 | 0.2 | -2.90 | 0.81 | 0.85 | 2.53 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 15.59 | 0.00 | 2.012 | 13.12 | 0.54 | 5.7 | 94.3 | 0.0 | -0.82 | 0.65 | 0.81 | 0.85 | 2.46 | 32604 | 3867 | 78 | 0 | 186 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2022-12-19 | 2020-04-15 | 3.8 | 4.64 | — | 3.8 | 0.015 | 1.46 | 0.0 | 0.11 | 16.37 | 0.02 | 0.864 | 22.04 | 2.15 | 4.8 | 95.2 | 0.0 | -1.92 | 0.80 | 0.83 | 1.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✔ | 7AR9 | 11877 | 2022-12-21 | 2020-10-23 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42861 | 5059 | 77 | 0 | 252 | 364 | 0 | logfile |