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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JLU | 9839 | 2024-03-21 | 2019-03-06 | 3.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 102777 | 9704 | 128 | 0 | 820 | 1 | 0 | logfile |
✘ | 6KAC | 9955 | 2024-03-17 | 2019-06-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✔ | 5WDT | 8813 | 2024-03-03 | 2017-07-06 | 3.0 | 3.20 | 3.19 | 3.2 | 0.008 | 1.13 | 2.0 | 0.10 | 24.24 | 0.02 | 1.527 | 4.72 | 3.29 | 9.7 | 88.1 | 2.3 | -4.08 | 0.77 | 0.80 | 2.46 | 3.1 | 0.007 | 0.82 | 3.0 | 0.04 | 23.70 | 0.01 | 1.741 | 10.82 | 5.11 | 8.6 | 90.8 | 0.5 | -1.45 | 1.26 | 0.84 | 0.85 | 2.33 | 155275 | 6324 | 125 | 4802 | 1910 | 920 | 0 | logfile |
✘ | 7UMH | 26601 | 2024-03-19 | 2022-04-07 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140516 | 12747 | 124 | 0 | 798 | 461 | 0 | logfile |
✔ | 7VA9 | 31835 | 2024-03-24 | 2021-08-27 | 3.08 | 2.58 | — | 2.9 | 0.020 | 2.12 | 0.0 | 0.05 | 18.94 | 0.05 | 1.992 | 15.64 | 2.83 | 2.3 | 97.7 | 0.0 | 1.34 | 0.60 | 0.79 | 3.23 | 2.8 | 0.004 | 0.74 | 0.0 | 0.04 | 17.71 | 0.00 | 1.785 | 8.33 | 2.06 | 1.6 | 98.4 | 0.0 | 2.36 | 0.53 | 0.64 | 0.83 | 3.17 | 42176 | 4350 | 124 | 0 | 131 | 0 | 0 | logfile |
✘ | 7Pi5 | 13430 | 2024-03-17 | 2021-08-19 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76287 | 7455 | 123 | 0 | 343 | 718 | 0 | logfile |
✘ | 7YMM | 33933 | 2024-03-17 | 2022-07-28 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 136856 | 13220 | 120 | 0 | 788 | 0 | 0 | logfile |
✔ | 6WH3 | 21667 | 2024-03-04 | 2020-04-07 | 2.96 | 3.01 | — | 3.0 | 0.011 | 1.09 | 60.0 | 0.08 | 9.53 | 0.01 | 2.204 | 31.34 | 0.68 | 3.9 | 96.1 | 0.0 | -1.75 | 0.74 | 0.87 | 5.56 | 3.0 | 0.005 | 0.67 | 0.0 | 0.05 | 15.98 | 0.00 | 2.080 | 15.46 | 4.61 | 6.0 | 94.0 | 0.0 | -1.26 | 0.60 | 0.71 | 0.89 | 4.69 | 157740 | 20040 | 120 | 0 | 60 | 0 | 0 | logfile |
✔ | 6J40 | 9777 | 2024-03-19 | 2019-01-07 | 3.8 | 4.30 | — | 3.8 | 0.022 | 1.99 | 4.0 | 0.18 | 22.44 | 0.01 | 1.376 | 17.72 | 0.33 | 4.5 | 95.5 | 0.0 | -5.08 | 0.80 | 0.72 | 1.93 | 3.8 | 0.007 | 0.91 | 0.0 | 0.05 | 16.67 | 0.01 | 1.418 | 23.29 | 1.56 | 5.8 | 94.2 | 0.0 | -0.54 | 1.30 | 0.84 | 0.78 | 1.59 | 96390 | 8392 | 120 | 0 | 1656 | 0 | 0 | logfile |
✔ | 7XXF | 33501 | 2024-03-21 | 2022-05-30 | 2.24 | 2.16 | 2.23 | 2.2 | 0.019 | 1.77 | 0.0 | 0.05 | 21.33 | 0.02 | 2.014 | 7.34 | 1.31 | 2.8 | 97.2 | 0.0 | 1.59 | 0.77 | 0.88 | 5.31 | 2.2 | 0.003 | 0.63 | 0.0 | 0.04 | 17.66 | 0.00 | 2.045 | 6.88 | 1.51 | 2.9 | 97.1 | 0.0 | 2.37 | 0.88 | 0.77 | 0.90 | 4.53 | 29826 | 3004 | 120 | 0 | 98 | 538 | 0 | logfile |
✔ | 8AKS | 15491 | 2024-03-10 | 2022-07-31 | 3.9 | 4.35 | 4.16 | 4.2 | 0.003 | 0.59 | 0.0 | 0.03 | 13.89 | 0.00 | 1.976 | 3.70 | 0.00 | 0.5 | 99.5 | 0.0 | 3.46 | 0.85 | 0.79 | 0.58 | 4.1 | 0.003 | 0.60 | 0.0 | 0.03 | 15.24 | 0.00 | 1.836 | 34.61 | 1.73 | 0.8 | 99.2 | 0.0 | 4.52 | 0.70 | 0.88 | 0.83 | 0.30 | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 8AKQ | 15489 | 2024-03-10 | 2022-07-31 | 4.1 | 4.54 | 4.23 | 4.3 | 0.004 | 0.61 | 0.0 | 0.03 | 15.04 | 0.00 | 2.262 | 5.43 | 0.00 | 0.0 | 100.0 | 0.0 | 1.78 | 0.86 | 0.80 | — | 4.3 | 0.005 | 0.72 | 0.0 | 0.03 | 14.67 | 0.00 | 1.883 | 35.62 | 0.00 | 0.5 | 99.5 | 0.0 | 4.28 | 0.80 | 0.88 | 0.83 | — | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 7A4F | 11631 | 2024-03-20 | 2020-08-19 | 3.5 | 3.84 | 3.47 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 11.66 | 0.00 | 2.212 | 6.40 | 3.31 | 2.4 | 97.6 | 0.0 | 1.60 | 0.78 | 0.84 | 1.24 | 3.7 | 0.004 | 0.68 | 4.0 | 0.04 | 15.27 | 0.00 | 1.834 | 11.62 | 3.27 | 2.6 | 97.4 | 0.0 | 2.17 | 2.15 | 0.79 | 0.86 | 0.90 | 141432 | 18540 | 120 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TXJ | 26159 | 2024-03-20 | 2022-02-09 | 3.9 | 4.24 | — | 4.1 | 0.006 | 0.88 | 0.0 | 0.04 | 18.49 | 0.01 | 1.473 | 20.10 | 0.00 | 6.7 | 92.8 | 0.6 | -1.20 | 0.55 | 0.83 | 1.83 | 4.1 | 0.005 | 0.83 | 0.0 | 0.04 | 19.84 | 0.00 | 2.059 | 14.43 | 4.96 | 7.2 | 92.4 | 0.4 | -0.50 | 1.68 | 0.56 | 0.86 | 1.41 | 97770 | 10560 | 120 | 720 | 0 | 0 | 0 | logfile |
✔ | 8AKT | 15492 | 2024-03-10 | 2022-07-31 | 4.4 | 5.10 | 4.49 | 4.5 | 0.004 | 0.61 | 0.0 | 0.03 | 14.81 | 0.00 | 2.020 | 11.71 | 0.00 | 1.5 | 98.5 | 0.0 | 0.62 | 0.90 | 0.85 | — | 4.5 | 0.002 | 0.57 | 0.0 | 0.03 | 14.59 | 0.00 | 1.819 | 47.84 | 0.00 | 1.5 | 98.5 | 0.0 | 4.92 | 2.08 | 0.90 | 0.86 | — | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 8UH4 | 42246 | 2024-03-11 | 2023-10-06 | 3.72 | 4.54 | 4.34 | 4.4 | 0.008 | 0.78 | 0.0 | 0.05 | 15.20 | 0.01 | 2.146 | 13.85 | 0.00 | 2.4 | 97.2 | 0.5 | -2.44 | 0.80 | 0.84 | 3.98 | 4.4 | 0.005 | 0.92 | 1.0 | 0.04 | 17.87 | 0.00 | 1.719 | 16.02 | 3.97 | 4.2 | 95.8 | 0.0 | -2.00 | 0.64 | 0.76 | 0.79 | 3.44 | 110100 | 12780 | 120 | 540 | 0 | 0 | 0 | logfile |
✔ | 6TGY | 10501 | 2024-03-20 | 2019-11-18 | 3.5 | 3.59 | 3.49 | 3.5 | 0.007 | 1.10 | 0.0 | 0.05 | 10.46 | 0.01 | 2.359 | 1.88 | 0.00 | 16.6 | 83.4 | 0.0 | -5.42 | 0.69 | 0.73 | 3.74 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 14.82 | 0.01 | 2.188 | 6.01 | 3.97 | 13.5 | 86.5 | 0.0 | -1.22 | 0.72 | 0.76 | 0.83 | 2.76 | 96960 | 12480 | 120 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AKR | 15490 | 2024-03-19 | 2022-07-31 | 3.8 | 4.20 | 3.96 | 4.0 | 0.003 | 0.75 | 0.0 | 0.03 | 15.16 | 0.00 | 2.143 | 5.96 | 0.17 | 0.8 | 99.2 | 0.0 | 3.80 | 0.87 | 0.82 | 0.65 | 4.0 | 0.002 | 0.63 | 0.0 | 0.03 | 16.48 | 0.00 | 2.201 | 5.97 | 1.98 | 0.9 | 99.1 | 0.0 | 5.65 | 0.46 | 0.87 | 0.81 | 0.58 | 96240 | 11760 | 119 | 0 | 60 | 0 | 0 | logfile |
✔ | 7QSM | 14134 | 2024-03-16 | 2022-01-13 | 2.3 | 2.31 | — | 2.3 | 0.007 | 0.92 | 0.0 | 0.85 | 16.42 | 0.00 | 1.860 | 2.79 | 0.58 | 2.3 | 97.6 | 0.0 | 0.75 | 0.76 | 0.90 | 6.42 | 2.3 | 0.007 | 1.28 | 0.0 | 0.25 | 16.35 | 0.00 | 1.979 | 4.46 | 0.85 | 1.7 | 98.3 | 0.0 | 1.86 | 0.81 | 0.77 | 0.91 | 5.55 | 71639 | 8262 | 118 | 0 | 62 | 2774 | 0 | logfile |
✔ | 8oM1 | 16965 | 2024-03-16 | 2023-03-31 | 2.39 | 2.36 | 2.39 | 2.3 | 0.008 | 0.94 | 0.0 | 1.03 | 18.68 | 0.00 | 1.939 | 3.23 | 0.91 | 2.6 | 97.3 | 0.0 | 0.11 | 0.77 | 0.88 | 5.67 | 2.4 | 0.008 | 1.55 | 0.0 | 0.31 | 17.05 | 0.00 | 2.039 | 4.79 | 1.19 | 1.8 | 98.2 | 0.0 | 1.68 | 0.26 | 0.78 | 0.89 | 5.18 | 71256 | 8246 | 118 | 0 | 60 | 2945 | 0 | logfile |