Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V7i	31772	2022-12-22	2021-08-21	3.3	4.09	—	3.8	0.005	0.59	0.0	0.05	13.45	0.00	2.128	8.36	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.004	0.57	0.0	0.04	14.85	0.00	1.991	7.32	0.18	5.6	94.3	0.1	-0.25	0.31	0.87	0.87	1.93	51072	6228	84	0	174	0	0	logfile
✔	7V7J	31773	2022-12-22	2021-08-21	3.4	4.17	—	3.8	0.004	0.56	0.0	0.05	13.55	0.00	2.144	9.66	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.004	0.57	0.0	0.04	14.98	0.00	2.137	8.93	0.18	5.9	94.0	0.1	-0.39	0.31	0.87	0.87	1.85	51072	6228	84	0	174	0	0	logfile
✘	6TRD	10559	2022-12-19	2019-12-18	3.16	3.25	—	3.2	0.010	1.27	0.0	0.07	19.84	0.02	1.222	8.27	4.75	8.8	91.2	0.0	-3.67	0.63	0.69	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74991	6849	84	0	402	51	0	logfile
✔	6QC3	4495	2022-12-17	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.32	1.0	0.85	12.07	0.01	1.873	8.94	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	4.2	0.007	1.49	0.0	0.26	13.46	0.01	1.333	19.21	0.05	10.1	89.9	0.0	-1.21	1.75	0.68	0.77	—	96897	12010	84	0	77	0	0	logfile
✘	8DVD	27735	2022-12-18	2022-07-28	4.12	4.71	4.34	4.3	0.004	0.56	0.0	0.05	13.05	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20804	2137	83	0	302	0	0	logfile
✔	6QC2	4494	2022-12-17	2018-12-26	4.2	4.29	4.30	4.2	0.009	1.24	1.0	0.85	11.75	0.01	1.942	8.36	0.57	11.4	88.5	0.1	-3.91	0.69	0.76	—	4.2	0.007	1.48	0.0	0.26	13.44	0.01	1.822	17.94	0.04	9.4	90.6	0.0	-1.27	0.99	0.70	0.78	—	96938	12000	83	0	93	0	0	logfile
✔	6QBX	4493	2022-12-17	2018-12-24	4.2	4.27	4.22	4.2	0.007	1.16	0.0	0.85	11.43	0.01	1.997	7.87	0.40	11.2	88.6	0.1	-3.98	0.64	0.71	—	4.2	0.007	1.46	0.0	0.26	13.55	0.01	1.851	17.82	0.04	9.4	90.6	0.0	-1.25	1.01	0.65	0.74	—	97049	12043	83	0	73	0	0	logfile
✔	7JSV	22460	2022-12-14	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	13.46	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.003	0.79	0.0	0.04	15.99	0.00	2.123	12.88	0.38	1.0	99.0	0.0	0.10	0.90	0.64	0.83	2.63	22140	2706	82	0	41	0	0	logfile
✘	6CDE	7459	2022-12-18	2018-02-08	3.8	4.08	—	3.9	0.007	0.94	0.0	0.10	9.91	0.01	1.655	8.88	0.21	6.0	94.0	0.0	-3.29	0.77	0.84	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32973	3846	81	0	222	0	0	logfile
✘	6CDi	7460	2022-12-18	2018-02-08	3.6	3.90	—	3.6	0.007	0.90	0.0	0.10	9.66	0.01	1.461	7.90	0.45	5.9	94.0	0.1	-3.25	0.84	0.84	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32763	3843	81	0	210	0	0	logfile
✘	6QC4	4496	2022-12-19	2018-12-26	4.6	4.73	4.64	4.6	0.006	1.11	0.0	0.85	11.15	0.01	1.949	8.13	0.38	10.8	89.0	0.1	-3.76	0.73	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96705	12008	81	0	85	0	0	logfile
✔	7CBL	30335	2022-12-19	2020-06-12	2.8	3.16	—	3.1	0.006	0.59	0.0	0.05	14.82	0.00	2.161	5.24	5.25	3.0	96.8	0.2	-2.55	0.78	0.87	2.70	3.1	0.004	0.58	0.0	0.05	16.34	0.00	2.143	6.01	4.46	3.1	96.9	0.0	-0.49	0.42	0.74	0.87	2.58	99242	13364	78	0	26	0	0	logfile
✘	7F4V	31455	2022-12-19	2021-06-21	2.04	1.80	—	2.0	0.025	2.42	0.0	0.08	19.55	0.03	1.203	4.76	2.78	3.0	96.9	0.1	-2.15	0.70	0.83	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✔	6oSY	20189	2022-12-16	2019-05-02	4.3	4.54	4.35	4.4	0.014	1.44	0.0	0.08	15.94	0.01	2.290	6.39	2.64	9.6	90.4	0.0	-3.58	0.77	0.83	—	4.4	0.004	0.79	0.0	0.05	14.07	0.01	2.143	14.55	0.00	8.0	92.0	0.0	-1.77	1.28	0.77	0.82	—	32463	3834	78	0	186	0	0	logfile
✔	4Ci0	2513	2022-12-16	2013-12-05	3.36	3.44	—	3.4	0.014	1.93	26.0	1.74	23.74	0.03	1.915	124.97	39.11	3.4	96.5	0.1	1.78	0.67	0.66	0.30	3.4	0.015	2.76	0.0	0.54	18.66	0.00	1.979	26.09	0.79	4.9	95.1	0.0	-0.73	1.81	0.78	0.87	1.60	90428	11609	78	0	117	0	0	logfile
✔	7QCo	13898	2022-12-16	2021-11-24	3.7	3.89	3.86	3.7	0.006	0.93	0.0	0.05	21.59	0.02	1.932	24.35	9.61	13.9	86.0	0.2	-4.15	0.72	0.69	0.82	3.7	0.003	0.79	0.0	0.05	19.14	0.01	1.454	19.09	0.59	10.0	90.0	0.0	-1.49	0.80	0.73	0.72	0.62	90396	8812	78	0	462	0	0	logfile
✘	7S3D	24821	2022-12-19	2021-09-05	2.91	3.04	—	3.0	0.031	3.31	3.0	0.10	19.68	0.02	1.207	15.80	2.64	6.0	93.1	0.9	-2.45	0.73	0.88	4.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75150	7074	78	0	417	333	0	logfile
✔	6NF2	9359	2022-12-16	2018-12-18	3.7	4.23	3.72	4.0	0.008	1.16	0.0	0.06	14.97	0.01	2.242	6.32	0.45	6.2	93.7	0.2	-2.90	0.81	0.85	2.53	4.0	0.004	0.72	0.0	0.04	15.59	0.00	2.012	13.12	0.54	5.7	94.3	0.0	-0.82	0.65	0.81	0.85	2.46	32604	3867	78	0	186	0	0	logfile
✘	6YP7	10865	2022-12-19	2020-04-15	3.8	4.64	—	3.8	0.015	1.46	0.0	0.11	16.37	0.02	0.864	22.04	2.15	4.8	95.2	0.0	-1.92	0.80	0.83	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71784	7002	77	0	325	0	0	logfile
✔	7AR9	11877	2022-12-21	2020-10-23	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	42861	5059	77	0	252	364	0	logfile

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