Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N8o	24239	2023-11-14	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✔	7R41	14251	2023-11-17	2022-02-08	2.3	2.35	—	2.4	0.008	0.85	0.0	0.84	16.92	0.01	1.904	3.40	1.01	2.4	97.5	0.0	0.57	0.71	0.90	5.72	2.4	0.007	1.30	0.0	0.25	16.90	0.00	2.000	4.52	1.15	1.7	98.3	0.0	1.64	0.79	0.71	0.91	5.20	69138	8194	111	0	57	1307	0	logfile
✔	7R4G	14307	2023-11-15	2022-02-08	2.5	2.48	—	2.5	0.008	0.81	0.0	0.86	15.27	0.01	1.869	4.23	0.03	3.2	96.8	0.0	-0.01	0.70	0.89	5.55	2.5	0.007	1.34	0.0	0.26	16.62	0.00	2.141	5.11	0.90	2.2	97.8	0.0	1.27	0.79	0.70	0.91	4.70	65153	7802	111	0	47	851	0	logfile
✔	7R43	14261	2023-11-17	2022-02-08	2.4	2.41	—	2.5	0.007	0.79	0.0	0.84	15.03	0.00	1.899	3.40	0.01	2.5	97.4	0.0	0.39	0.69	0.89	5.73	2.4	0.007	1.30	0.0	0.25	16.38	0.00	1.204	4.60	0.56	1.6	98.4	0.0	1.60	0.31	0.69	0.90	4.85	68334	8188	109	0	47	885	0	logfile
✔	7QSL	14133	2023-11-17	2022-01-13	2.76	2.80	2.81	2.7	0.010	0.96	0.0	0.84	14.23	0.00	1.561	3.91	0.06	3.1	96.8	0.0	-0.57	0.78	0.89	5.14	2.7	0.007	1.30	0.0	0.25	15.89	0.00	1.483	5.63	0.77	2.1	97.9	0.0	1.47	0.87	0.78	0.90	4.18	69734	8287	109	0	56	1024	0	logfile
✘	7D1T	30547	2023-11-13	2020-09-15	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	7oUi	13078	2023-11-20	2021-06-11	2.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	84427	8342	108	0	374	139	0	logfile
✘	5GUP	9539	2023-11-14	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✔	6WL8	21817	2023-11-18	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.77	0.0	0.04	14.66	0.00	2.189	14.23	0.00	0.4	99.6	0.0	3.52	1.84	0.74	0.86	—	23850	3074	106	0	0	0	0	logfile
✔	8oLT	16962	2023-11-17	2023-03-30	2.84	2.41	2.82	2.8	0.010	0.93	0.0	1.02	14.90	0.01	1.872	5.36	0.38	4.7	95.2	0.1	-1.43	0.60	0.83	4.32	2.8	0.008	1.58	0.0	0.31	16.94	0.00	1.500	6.76	1.67	2.4	97.6	0.0	1.08	1.16	0.61	0.85	3.63	68076	8213	106	0	56	280	0	logfile
✔	7PWG	13681	2023-11-14	2021-10-06	2.75	2.35	—	2.5	0.010	1.07	0.0	0.06	16.09	0.02	1.376	3.78	6.08	4.4	95.6	0.0	-2.19	0.76	0.88	4.64	2.5	0.006	0.87	0.0	0.05	16.59	0.01	1.680	4.25	3.78	3.6	96.4	0.0	-0.43	0.30	0.76	0.88	4.00	109151	5769	105	2722	294	4397	0	logfile
✔	6WKX	21812	2023-11-15	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.003	0.66	0.0	0.04	16.29	0.00	2.237	9.35	0.00	0.1	99.9	0.0	4.37	1.00	0.77	0.89	—	12915	1575	105	0	0	0	0	logfile
✔	6WL9	21818	2023-11-18	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.85	0.0	0.05	13.42	0.00	2.210	16.90	0.05	0.0	100.0	0.0	2.71	0.97	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✘	7oY8	13110	2023-11-18	2021-06-23	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22902	2293	103	0	68	372	0	logfile
✘	7DGR	30674	2023-11-13	2020-11-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7XM1	33289	2023-11-14	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	3.9	0.003	0.56	0.0	0.04	18.87	0.00	2.214	4.30	0.31	3.3	96.7	0.0	2.60	0.65	0.74	0.83	1.49	60240	7380	101	0	60	0	0	logfile
✔	7VB9	31875	2023-11-22	2021-08-30	3.45	3.03	—	3.3	0.019	1.97	0.0	0.04	17.13	0.05	2.077	14.17	3.01	2.8	97.2	0.0	2.33	0.62	0.77	2.94	3.3	0.004	0.72	0.0	0.04	17.15	0.00	1.743	10.91	0.25	2.4	97.6	0.0	2.13	1.79	0.65	0.82	2.64	36474	3807	100	0	107	0	0	logfile
✔	7LQi	23487	2023-11-14	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.77	3.33	46.5	53.5	0.0	-7.05	1.54	0.65	0.83	2.52	8400	800	100	0	0	0	0	logfile
✘	6TRC	10558	2023-11-18	2019-12-18	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	2XEA	1730	2023-11-15	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile

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