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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N8o | 24239 | 2023-11-14 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 20.28 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.81 | 0.0 | 0.05 | 18.74 | 0.01 | 2.000 | 12.74 | 1.66 | 3.0 | 97.0 | 0.0 | 0.83 | 0.34 | 0.77 | 0.80 | 5.41 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✔ | 7R41 | 14251 | 2023-11-17 | 2022-02-08 | 2.3 | 2.35 | — | 2.4 | 0.008 | 0.85 | 0.0 | 0.84 | 16.92 | 0.01 | 1.904 | 3.40 | 1.01 | 2.4 | 97.5 | 0.0 | 0.57 | 0.71 | 0.90 | 5.72 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.90 | 0.00 | 2.000 | 4.52 | 1.15 | 1.7 | 98.3 | 0.0 | 1.64 | 0.79 | 0.71 | 0.91 | 5.20 | 69138 | 8194 | 111 | 0 | 57 | 1307 | 0 | logfile |
✔ | 7R4G | 14307 | 2023-11-15 | 2022-02-08 | 2.5 | 2.48 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.86 | 15.27 | 0.01 | 1.869 | 4.23 | 0.03 | 3.2 | 96.8 | 0.0 | -0.01 | 0.70 | 0.89 | 5.55 | 2.5 | 0.007 | 1.34 | 0.0 | 0.26 | 16.62 | 0.00 | 2.141 | 5.11 | 0.90 | 2.2 | 97.8 | 0.0 | 1.27 | 0.79 | 0.70 | 0.91 | 4.70 | 65153 | 7802 | 111 | 0 | 47 | 851 | 0 | logfile |
✔ | 7R43 | 14261 | 2023-11-17 | 2022-02-08 | 2.4 | 2.41 | — | 2.5 | 0.007 | 0.79 | 0.0 | 0.84 | 15.03 | 0.00 | 1.899 | 3.40 | 0.01 | 2.5 | 97.4 | 0.0 | 0.39 | 0.69 | 0.89 | 5.73 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.38 | 0.00 | 1.204 | 4.60 | 0.56 | 1.6 | 98.4 | 0.0 | 1.60 | 0.31 | 0.69 | 0.90 | 4.85 | 68334 | 8188 | 109 | 0 | 47 | 885 | 0 | logfile |
✔ | 7QSL | 14133 | 2023-11-17 | 2022-01-13 | 2.76 | 2.80 | 2.81 | 2.7 | 0.010 | 0.96 | 0.0 | 0.84 | 14.23 | 0.00 | 1.561 | 3.91 | 0.06 | 3.1 | 96.8 | 0.0 | -0.57 | 0.78 | 0.89 | 5.14 | 2.7 | 0.007 | 1.30 | 0.0 | 0.25 | 15.89 | 0.00 | 1.483 | 5.63 | 0.77 | 2.1 | 97.9 | 0.0 | 1.47 | 0.87 | 0.78 | 0.90 | 4.18 | 69734 | 8287 | 109 | 0 | 56 | 1024 | 0 | logfile |
✘ | 7D1T | 30547 | 2023-11-13 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 7oUi | 13078 | 2023-11-20 | 2021-06-11 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84427 | 8342 | 108 | 0 | 374 | 139 | 0 | logfile |
✘ | 5GUP | 9539 | 2023-11-14 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 6WL8 | 21817 | 2023-11-18 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 14.66 | 0.00 | 2.189 | 14.23 | 0.00 | 0.4 | 99.6 | 0.0 | 3.52 | 1.84 | 0.74 | 0.86 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLT | 16962 | 2023-11-17 | 2023-03-30 | 2.84 | 2.41 | 2.82 | 2.8 | 0.010 | 0.93 | 0.0 | 1.02 | 14.90 | 0.01 | 1.872 | 5.36 | 0.38 | 4.7 | 95.2 | 0.1 | -1.43 | 0.60 | 0.83 | 4.32 | 2.8 | 0.008 | 1.58 | 0.0 | 0.31 | 16.94 | 0.00 | 1.500 | 6.76 | 1.67 | 2.4 | 97.6 | 0.0 | 1.08 | 1.16 | 0.61 | 0.85 | 3.63 | 68076 | 8213 | 106 | 0 | 56 | 280 | 0 | logfile |
✔ | 7PWG | 13681 | 2023-11-14 | 2021-10-06 | 2.75 | 2.35 | — | 2.5 | 0.010 | 1.07 | 0.0 | 0.06 | 16.09 | 0.02 | 1.376 | 3.78 | 6.08 | 4.4 | 95.6 | 0.0 | -2.19 | 0.76 | 0.88 | 4.64 | 2.5 | 0.006 | 0.87 | 0.0 | 0.05 | 16.59 | 0.01 | 1.680 | 4.25 | 3.78 | 3.6 | 96.4 | 0.0 | -0.43 | 0.30 | 0.76 | 0.88 | 4.00 | 109151 | 5769 | 105 | 2722 | 294 | 4397 | 0 | logfile |
✔ | 6WKX | 21812 | 2023-11-15 | 2020-04-17 | 4.2 | 4.31 | — | 4.2 | 0.006 | 0.59 | 0.0 | 0.04 | 15.11 | 0.00 | 2.298 | 2.52 | 0.00 | 0.0 | 100.0 | 0.0 | -3.67 | 0.77 | 0.90 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 16.29 | 0.00 | 2.237 | 9.35 | 0.00 | 0.1 | 99.9 | 0.0 | 4.37 | 1.00 | 0.77 | 0.89 | — | 12915 | 1575 | 105 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL9 | 21818 | 2023-11-18 | 2020-04-18 | 4.2 | 4.68 | — | 4.4 | 0.006 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.052 | 24.33 | 0.00 | 1.9 | 98.1 | 0.0 | 1.21 | 0.74 | 0.87 | — | 4.4 | 0.004 | 0.85 | 0.0 | 0.05 | 13.42 | 0.00 | 2.210 | 16.90 | 0.05 | 0.0 | 100.0 | 0.0 | 2.71 | 0.97 | 0.73 | 0.86 | — | 23400 | 3016 | 104 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2023-11-18 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-11-13 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✔ | 7XM1 | 33289 | 2023-11-14 | 2022-04-24 | 3.96 | 3.41 | 3.91 | 4.0 | 0.002 | 0.43 | 0.0 | 0.04 | 15.16 | 0.00 | 2.503 | 2.22 | 0.00 | 3.3 | 96.7 | 0.0 | 2.33 | 0.73 | 0.81 | 1.85 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 18.87 | 0.00 | 2.214 | 4.30 | 0.31 | 3.3 | 96.7 | 0.0 | 2.60 | 0.65 | 0.74 | 0.83 | 1.49 | 60240 | 7380 | 101 | 0 | 60 | 0 | 0 | logfile |
✔ | 7VB9 | 31875 | 2023-11-22 | 2021-08-30 | 3.45 | 3.03 | — | 3.3 | 0.019 | 1.97 | 0.0 | 0.04 | 17.13 | 0.05 | 2.077 | 14.17 | 3.01 | 2.8 | 97.2 | 0.0 | 2.33 | 0.62 | 0.77 | 2.94 | 3.3 | 0.004 | 0.72 | 0.0 | 0.04 | 17.15 | 0.00 | 1.743 | 10.91 | 0.25 | 2.4 | 97.6 | 0.0 | 2.13 | 1.79 | 0.65 | 0.82 | 2.64 | 36474 | 3807 | 100 | 0 | 107 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2023-11-14 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.77 | 3.33 | 46.5 | 53.5 | 0.0 | -7.05 | 1.54 | 0.65 | 0.83 | 2.52 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TRC | 10558 | 2023-11-18 | 2019-12-18 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75591 | 6849 | 99 | 0 | 402 | 651 | 0 | logfile |
✘ | 2XEA | 1730 | 2023-11-15 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |