Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7PD3	13329	2023-04-20	2021-08-04	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108076	9276	76	1522	125	0	0	logfile
✘	6LY5	30012	2023-04-29	2020-02-13	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81344	6510	76	0	723	153	0	logfile
✘	3JCU	6617	2023-04-28	2016-03-10	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✔	3JCS	6583	2023-04-23	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.57	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.88	0.0	0.04	19.86	0.01	1.859	18.52	3.13	10.9	89.1	0.1	-2.74	0.51	0.71	0.80	2.76	117257	5847	74	3420	109	144	0	logfile
✘	7PNK	13548	2023-04-21	2021-09-07	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60673	6142	74	0	250	0	0	logfile
✔	6PEM	20316	2023-04-20	2019-06-20	3.5	3.59	—	3.5	0.007	0.93	1.0	0.06	13.99	0.01	2.238	2.98	0.39	3.5	96.4	0.0	-5.10	0.82	0.89	2.08	3.5	0.003	0.62	0.0	0.04	15.86	0.00	2.154	5.92	0.37	3.6	96.4	0.0	-0.21	1.78	0.82	0.88	1.75	108033	13503	74	0	0	0	0	logfile
✔	7C9R	30314	2023-04-29	2020-06-07	2.82	2.97	—	3.0	0.020	3.32	29.0	0.13	21.94	0.02	1.938	7.80	0.43	3.9	96.0	0.1	-0.57	0.76	0.94	4.41	3.0	0.004	1.55	0.0	0.04	20.61	0.00	1.979	5.54	1.37	2.5	97.5	0.0	1.93	0.93	0.74	0.92	3.14	29228	3009	72	0	124	0	0	logfile
✘	6L4U	0835	2023-04-22	2019-10-21	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62199	5075	72	0	557	156	0	logfile
✔	6M3X	30073	2023-04-22	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.003	0.61	0.0	0.05	16.91	0.00	2.259	5.96	0.73	2.9	97.1	0.0	0.36	0.42	0.78	0.91	6.73	62387	7440	72	0	24	2243	0	logfile
✔	7X9W	33084	2023-04-21	2022-03-16	2.78	2.90	2.88	2.9	0.008	0.84	12.0	0.06	15.86	0.01	2.241	6.77	6.86	3.8	96.2	0.0	-2.46	0.78	0.83	3.91	2.9	0.004	0.64	0.0	0.05	17.40	0.00	2.071	7.90	3.56	2.1	97.9	0.0	-0.73	0.46	0.77	0.84	4.17	59640	7368	72	0	24	48	0	logfile
✔	6UDJ	20739	2023-04-27	2019-09-19	2.5	2.60	2.46	2.6	0.010	1.16	0.0	0.07	13.98	0.01	2.252	3.11	0.41	4.1	95.8	0.1	-1.93	0.71	0.85	4.78	2.6	0.004	0.68	0.0	0.05	16.32	0.00	2.015	6.64	2.36	3.3	96.7	0.0	-0.07	0.42	0.71	0.86	4.46	26592	3090	72	0	177	45	0	logfile
✘	6KMX	0727	2023-04-23	2019-08-01	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile
✔	7N65	24195	2023-04-25	2021-06-07	4.15	4.35	—	4.2	0.011	1.36	0.0	0.07	14.95	0.01	1.935	36.06	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.004	0.86	0.0	0.05	13.50	0.00	2.139	19.44	0.00	11.1	88.9	0.0	-2.77	0.73	0.77	0.75	—	21525	2454	72	0	189	0	0	logfile
✘	6Z5R	11080	2023-04-27	2020-05-27	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25048	2336	72	0	105	3	0	logfile
✔	6ZKD	11245	2023-04-24	2020-06-30	2.7	2.83	—	2.7	0.008	1.02	0.0	1.03	11.89	0.01	2.196	5.23	0.06	3.4	96.6	0.0	-2.68	0.77	0.87	4.54	2.7	0.009	1.59	0.0	0.31	15.81	0.00	1.476	10.68	1.60	3.1	96.9	0.0	0.70	1.61	0.78	0.89	3.76	67450	8160	71	0	46	0	0	logfile
✘	7VoY	32062	2023-04-26	2021-10-15	4.2	3.14	—	3.1	0.009	0.97	0.0	0.10	14.41	0.01	2.056	16.17	1.25	4.6	95.4	0.0	0.99	0.45	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22119	2479	71	0	44	0	0	logfile
✔	6ZKJ	11251	2023-04-24	2020-06-30	3.0	3.10	—	3.0	0.007	0.99	0.0	1.03	11.77	0.01	2.263	5.39	0.07	3.7	96.3	0.0	-2.95	0.73	0.85	4.05	3.0	0.009	1.60	0.0	0.31	16.28	0.00	2.093	12.26	1.78	3.2	96.7	0.0	0.38	1.64	0.73	0.87	3.18	67479	8163	71	0	46	0	0	logfile
✔	6ZKQ	11258	2023-04-24	2020-06-30	3.3	3.43	—	3.4	0.009	1.03	0.0	1.03	11.72	0.01	2.210	4.49	0.06	4.3	95.7	0.0	-3.17	0.67	0.87	4.05	3.4	0.009	1.61	0.0	0.31	15.36	0.00	2.116	11.77	0.48	4.1	95.9	0.0	0.39	0.64	0.68	0.88	3.10	67353	8157	71	0	44	0	0	logfile
✔	7V31	31649	2023-04-25	2021-08-10	2.9	2.99	—	3.0	0.007	0.90	11.0	0.05	15.74	0.01	1.681	10.60	0.36	3.4	96.5	0.1	0.59	0.79	0.87	3.49	3.0	0.003	0.57	0.0	0.04	16.83	0.00	2.081	7.16	1.41	3.7	96.3	0.0	0.96	0.37	0.78	0.88	3.06	68204	8269	71	0	47	0	0	logfile
✔	7oDT	12847	2023-04-21	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.01	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.003	0.58	0.0	0.04	14.67	0.00	1.891	10.64	0.27	2.6	97.4	0.0	0.69	0.71	0.78	0.83	2.53	110473	9585	71	1526	110	0	0	logfile

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