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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7PD3 | 13329 | 2023-04-20 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 6LY5 | 30012 | 2023-04-29 | 2020-02-13 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81344 | 6510 | 76 | 0 | 723 | 153 | 0 | logfile |
✘ | 3JCU | 6617 | 2023-04-28 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✔ | 3JCS | 6583 | 2023-04-23 | 2016-01-21 | 2.8 | 3.07 | — | 3.0 | 0.009 | 0.98 | 1.0 | 0.05 | 19.57 | 0.03 | 1.093 | 24.89 | 1.41 | 11.8 | 88.0 | 0.2 | -5.35 | 0.72 | 0.78 | 3.98 | 3.0 | 0.007 | 0.88 | 0.0 | 0.04 | 19.86 | 0.01 | 1.859 | 18.52 | 3.13 | 10.9 | 89.1 | 0.1 | -2.74 | 0.51 | 0.71 | 0.80 | 2.76 | 117257 | 5847 | 74 | 3420 | 109 | 144 | 0 | logfile |
✘ | 7PNK | 13548 | 2023-04-21 | 2021-09-07 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60673 | 6142 | 74 | 0 | 250 | 0 | 0 | logfile |
✔ | 6PEM | 20316 | 2023-04-20 | 2019-06-20 | 3.5 | 3.59 | — | 3.5 | 0.007 | 0.93 | 1.0 | 0.06 | 13.99 | 0.01 | 2.238 | 2.98 | 0.39 | 3.5 | 96.4 | 0.0 | -5.10 | 0.82 | 0.89 | 2.08 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.86 | 0.00 | 2.154 | 5.92 | 0.37 | 3.6 | 96.4 | 0.0 | -0.21 | 1.78 | 0.82 | 0.88 | 1.75 | 108033 | 13503 | 74 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C9R | 30314 | 2023-04-29 | 2020-06-07 | 2.82 | 2.97 | — | 3.0 | 0.020 | 3.32 | 29.0 | 0.13 | 21.94 | 0.02 | 1.938 | 7.80 | 0.43 | 3.9 | 96.0 | 0.1 | -0.57 | 0.76 | 0.94 | 4.41 | 3.0 | 0.004 | 1.55 | 0.0 | 0.04 | 20.61 | 0.00 | 1.979 | 5.54 | 1.37 | 2.5 | 97.5 | 0.0 | 1.93 | 0.93 | 0.74 | 0.92 | 3.14 | 29228 | 3009 | 72 | 0 | 124 | 0 | 0 | logfile |
✘ | 6L4U | 0835 | 2023-04-22 | 2019-10-21 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62199 | 5075 | 72 | 0 | 557 | 156 | 0 | logfile |
✔ | 6M3X | 30073 | 2023-04-22 | 2020-03-04 | 2.24 | 2.31 | — | 2.3 | 0.006 | 0.81 | 0.0 | 0.05 | 13.95 | 0.01 | 2.222 | 3.45 | 0.37 | 3.2 | 96.8 | 0.0 | -2.65 | 0.78 | 0.90 | 7.35 | 2.3 | 0.003 | 0.61 | 0.0 | 0.05 | 16.91 | 0.00 | 2.259 | 5.96 | 0.73 | 2.9 | 97.1 | 0.0 | 0.36 | 0.42 | 0.78 | 0.91 | 6.73 | 62387 | 7440 | 72 | 0 | 24 | 2243 | 0 | logfile |
✔ | 7X9W | 33084 | 2023-04-21 | 2022-03-16 | 2.78 | 2.90 | 2.88 | 2.9 | 0.008 | 0.84 | 12.0 | 0.06 | 15.86 | 0.01 | 2.241 | 6.77 | 6.86 | 3.8 | 96.2 | 0.0 | -2.46 | 0.78 | 0.83 | 3.91 | 2.9 | 0.004 | 0.64 | 0.0 | 0.05 | 17.40 | 0.00 | 2.071 | 7.90 | 3.56 | 2.1 | 97.9 | 0.0 | -0.73 | 0.46 | 0.77 | 0.84 | 4.17 | 59640 | 7368 | 72 | 0 | 24 | 48 | 0 | logfile |
✔ | 6UDJ | 20739 | 2023-04-27 | 2019-09-19 | 2.5 | 2.60 | 2.46 | 2.6 | 0.010 | 1.16 | 0.0 | 0.07 | 13.98 | 0.01 | 2.252 | 3.11 | 0.41 | 4.1 | 95.8 | 0.1 | -1.93 | 0.71 | 0.85 | 4.78 | 2.6 | 0.004 | 0.68 | 0.0 | 0.05 | 16.32 | 0.00 | 2.015 | 6.64 | 2.36 | 3.3 | 96.7 | 0.0 | -0.07 | 0.42 | 0.71 | 0.86 | 4.46 | 26592 | 3090 | 72 | 0 | 177 | 45 | 0 | logfile |
✘ | 6KMX | 0727 | 2023-04-23 | 2019-08-01 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✔ | 7N65 | 24195 | 2023-04-25 | 2021-06-07 | 4.15 | 4.35 | — | 4.2 | 0.011 | 1.36 | 0.0 | 0.07 | 14.95 | 0.01 | 1.935 | 36.06 | 4.29 | 15.2 | 84.6 | 0.2 | -4.44 | 0.78 | 0.77 | — | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 13.50 | 0.00 | 2.139 | 19.44 | 0.00 | 11.1 | 88.9 | 0.0 | -2.77 | 0.73 | 0.77 | 0.75 | — | 21525 | 2454 | 72 | 0 | 189 | 0 | 0 | logfile |
✘ | 6Z5R | 11080 | 2023-04-27 | 2020-05-27 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25048 | 2336 | 72 | 0 | 105 | 3 | 0 | logfile |
✔ | 6ZKD | 11245 | 2023-04-24 | 2020-06-30 | 2.7 | 2.83 | — | 2.7 | 0.008 | 1.02 | 0.0 | 1.03 | 11.89 | 0.01 | 2.196 | 5.23 | 0.06 | 3.4 | 96.6 | 0.0 | -2.68 | 0.77 | 0.87 | 4.54 | 2.7 | 0.009 | 1.59 | 0.0 | 0.31 | 15.81 | 0.00 | 1.476 | 10.68 | 1.60 | 3.1 | 96.9 | 0.0 | 0.70 | 1.61 | 0.78 | 0.89 | 3.76 | 67450 | 8160 | 71 | 0 | 46 | 0 | 0 | logfile |
✘ | 7VoY | 32062 | 2023-04-26 | 2021-10-15 | 4.2 | 3.14 | — | 3.1 | 0.009 | 0.97 | 0.0 | 0.10 | 14.41 | 0.01 | 2.056 | 16.17 | 1.25 | 4.6 | 95.4 | 0.0 | 0.99 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22119 | 2479 | 71 | 0 | 44 | 0 | 0 | logfile |
✔ | 6ZKJ | 11251 | 2023-04-24 | 2020-06-30 | 3.0 | 3.10 | — | 3.0 | 0.007 | 0.99 | 0.0 | 1.03 | 11.77 | 0.01 | 2.263 | 5.39 | 0.07 | 3.7 | 96.3 | 0.0 | -2.95 | 0.73 | 0.85 | 4.05 | 3.0 | 0.009 | 1.60 | 0.0 | 0.31 | 16.28 | 0.00 | 2.093 | 12.26 | 1.78 | 3.2 | 96.7 | 0.0 | 0.38 | 1.64 | 0.73 | 0.87 | 3.18 | 67479 | 8163 | 71 | 0 | 46 | 0 | 0 | logfile |
✔ | 6ZKQ | 11258 | 2023-04-24 | 2020-06-30 | 3.3 | 3.43 | — | 3.4 | 0.009 | 1.03 | 0.0 | 1.03 | 11.72 | 0.01 | 2.210 | 4.49 | 0.06 | 4.3 | 95.7 | 0.0 | -3.17 | 0.67 | 0.87 | 4.05 | 3.4 | 0.009 | 1.61 | 0.0 | 0.31 | 15.36 | 0.00 | 2.116 | 11.77 | 0.48 | 4.1 | 95.9 | 0.0 | 0.39 | 0.64 | 0.68 | 0.88 | 3.10 | 67353 | 8157 | 71 | 0 | 44 | 0 | 0 | logfile |
✔ | 7V31 | 31649 | 2023-04-25 | 2021-08-10 | 2.9 | 2.99 | — | 3.0 | 0.007 | 0.90 | 11.0 | 0.05 | 15.74 | 0.01 | 1.681 | 10.60 | 0.36 | 3.4 | 96.5 | 0.1 | 0.59 | 0.79 | 0.87 | 3.49 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 16.83 | 0.00 | 2.081 | 7.16 | 1.41 | 3.7 | 96.3 | 0.0 | 0.96 | 0.37 | 0.78 | 0.88 | 3.06 | 68204 | 8269 | 71 | 0 | 47 | 0 | 0 | logfile |
✔ | 7oDT | 12847 | 2023-04-21 | 2021-04-30 | 3.1 | 3.31 | — | 3.1 | 0.003 | 0.41 | 0.0 | 0.03 | 11.01 | 0.01 | 1.988 | 5.28 | 0.53 | 1.2 | 98.8 | 0.0 | 1.05 | 0.77 | 0.79 | 2.84 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.67 | 0.00 | 1.891 | 10.64 | 0.27 | 2.6 | 97.4 | 0.0 | 0.69 | 0.71 | 0.78 | 0.83 | 2.53 | 110473 | 9585 | 71 | 1526 | 110 | 0 | 0 | logfile |