The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MDN | 9101 | 2024-04-11 | 2018-09-04 | 4.4 | 8.07 | — | 4.0 | 0.016 | 1.67 | 1.0 | 0.12 | 12.42 | 0.01 | 1.938 | 6.70 | 0.38 | 2.8 | 96.9 | 0.2 | -3.67 | 0.87 | 0.70 | — | 3.9 | 0.003 | 0.64 | 0.0 | 0.06 | 12.18 | 0.00 | 1.853 | 19.21 | 0.03 | 7.0 | 93.0 | 0.0 | -1.30 | 0.85 | 0.93 | 0.84 | — | 72910 | 4632 | 17 | 0 | 11 | 0 | 36496 | logfile |
✔ | 8Si6 | 40500 | 2024-04-12 | 2023-04-14 | 2.44 | 2.67 | 2.66 | 2.8 | 0.012 | 1.10 | 0.0 | 0.06 | 19.48 | 0.01 | 2.047 | 3.07 | 0.00 | 7.5 | 91.8 | 0.7 | -5.09 | 0.45 | 0.52 | 1.04 | 2.7 | 0.004 | 0.80 | 1.0 | 0.04 | 18.91 | 0.00 | 2.081 | 14.57 | 1.43 | 8.4 | 91.4 | 0.3 | -0.73 | 1.75 | 0.61 | 0.82 | 3.20 | 74889 | 4428 | 8 | 0 | 65 | 0 | 36240 | logfile |
✔ | 6VFS | 21187 | 2024-04-10 | 2020-01-06 | 3.3 | 3.50 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 11.05 | 0.00 | 2.062 | 1.79 | 0.13 | 2.9 | 97.1 | 0.0 | -0.56 | 0.60 | 0.53 | 1.84 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 16.08 | 0.00 | 1.861 | 11.76 | 1.74 | 3.4 | 96.6 | 0.0 | -0.48 | 1.99 | 0.72 | 0.77 | 1.57 | 71827 | 4576 | 27 | 0 | 17 | 0 | 36156 | logfile |
✔ | 8Si4 | 40498 | 2024-04-12 | 2023-04-14 | 2.46 | 2.61 | 2.60 | 2.7 | 0.014 | 1.27 | 0.0 | 0.07 | 19.13 | 0.01 | 2.040 | 4.33 | 0.82 | 11.4 | 87.9 | 0.7 | -5.18 | 0.58 | 0.72 | 3.54 | 2.7 | 0.005 | 0.67 | 0.0 | 0.05 | 18.86 | 0.01 | 1.854 | 16.92 | 1.56 | 9.2 | 90.5 | 0.3 | -1.59 | 0.83 | 0.63 | 0.76 | 2.83 | 75145 | 4420 | 12 | 0 | 65 | 236 | 36148 | logfile |
✔ | 8Si8 | 40502 | 2024-04-12 | 2023-04-14 | 2.99 | 3.23 | 3.11 | 3.2 | 0.014 | 1.31 | 0.0 | 0.06 | 19.11 | 0.01 | 1.990 | 4.28 | 0.41 | 12.7 | 86.6 | 0.7 | -5.92 | 0.66 | 0.78 | 3.56 | 3.2 | 0.004 | 0.67 | 0.0 | 0.05 | 17.82 | 0.00 | 1.869 | 16.87 | 1.63 | 11.2 | 88.7 | 0.1 | -1.88 | 0.95 | 0.68 | 0.84 | 2.15 | 74753 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |
✘ | 8SiA | 40504 | 2024-04-12 | 2023-04-14 | 2.91 | 3.13 | 3.00 | 3.1 | 0.013 | 1.24 | 0.0 | 0.09 | 19.00 | 0.01 | 1.993 | 5.03 | 0.72 | 14.5 | 85.0 | 0.5 | -6.42 | 0.61 | 0.69 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74681 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |
✔ | 8Si7 | 40501 | 2024-04-12 | 2023-04-14 | 2.59 | 2.88 | 2.81 | 3.0 | 0.015 | 1.22 | 0.0 | 0.06 | 19.21 | 0.01 | 1.983 | 3.79 | 0.20 | 9.1 | 90.2 | 0.7 | -4.99 | 0.58 | 0.76 | 4.17 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 17.67 | 0.00 | 1.904 | 13.45 | 0.79 | 8.4 | 91.2 | 0.4 | -0.45 | 0.84 | 0.58 | 0.83 | 3.67 | 74897 | 4420 | 12 | 0 | 65 | 156 | 36136 | logfile |
✔ | 8Si3 | 40497 | 2024-04-12 | 2023-04-14 | 2.61 | 2.82 | 2.75 | 2.9 | 0.009 | 1.18 | 0.0 | 0.05 | 18.92 | 0.01 | 1.981 | 4.43 | 0.41 | 8.7 | 90.7 | 0.6 | -5.14 | 0.58 | 0.74 | 4.13 | 2.9 | 0.004 | 0.63 | 0.0 | 0.04 | 18.01 | 0.00 | 1.857 | 13.78 | 1.23 | 7.7 | 92.1 | 0.2 | -0.74 | 1.42 | 0.63 | 0.83 | 3.53 | 74749 | 4420 | 12 | 0 | 61 | 160 | 36136 | logfile |
✔ | 7oDE | 12826 | 2024-04-14 | 2021-04-29 | 2.84 | 2.98 | 2.78 | 2.9 | 0.003 | 0.38 | 0.0 | 0.03 | 22.76 | 0.01 | 1.949 | 3.00 | 3.32 | 2.0 | 98.0 | 0.0 | -0.12 | 0.82 | 0.80 | 3.61 | 2.8 | 0.006 | 0.62 | 0.0 | 0.04 | 22.90 | 0.01 | 1.866 | 6.28 | 2.98 | 4.2 | 95.8 | 0.0 | -0.16 | 0.54 | 0.85 | 0.84 | 3.35 | 92524 | 1761 | 16 | 1990 | 0 | 0 | 35996 | logfile |
✔ | 8Si5 | 40499 | 2024-04-12 | 2023-04-14 | 2.17 | 2.32 | 2.30 | 2.3 | 0.015 | 1.21 | 0.0 | 0.07 | 18.25 | 0.01 | 2.001 | 3.41 | 0.31 | 7.7 | 92.1 | 0.2 | -3.02 | 0.60 | 0.78 | 4.56 | 2.3 | 0.003 | 0.62 | 0.0 | 0.05 | 17.20 | 0.00 | 1.884 | 12.83 | 0.93 | 5.1 | 94.9 | 0.0 | 0.04 | 0.63 | 0.65 | 0.86 | 3.60 | 74865 | 4388 | 12 | 0 | 65 | 404 | 35916 | logfile |
✔ | 7QiX | 14002 | 2024-04-12 | 2021-12-16 | 2.53 | 2.44 | 2.40 | 2.4 | 0.008 | 0.81 | 0.0 | 0.03 | 20.38 | 0.02 | 1.788 | 1.96 | 0.08 | 0.9 | 99.1 | 0.0 | 0.25 | 0.74 | 0.86 | 5.47 | 2.4 | 0.005 | 0.75 | 0.0 | 0.04 | 21.33 | 0.01 | 1.642 | 3.59 | 1.36 | 1.3 | 98.7 | 0.0 | 0.91 | 0.53 | 0.76 | 0.88 | 4.95 | 83517 | 2911 | 42 | 1110 | 81 | 570 | 35777 | logfile |
✔ | 8B0H | 15781 | 2024-04-11 | 2022-09-07 | 3.3 | 3.48 | 3.37 | 3.4 | 0.004 | 0.87 | 2.0 | 0.05 | 15.38 | 0.01 | 1.853 | 8.69 | 0.56 | 5.1 | 94.9 | 0.0 | -0.65 | 0.67 | 0.79 | 2.70 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.54 | 0.00 | 1.903 | 8.64 | 1.60 | 4.1 | 95.9 | 0.0 | 0.02 | 0.54 | 0.69 | 0.83 | 2.45 | 72850 | 4703 | 9 | 0 | 0 | 0 | 35735 | logfile |
✘ | 7ZQ9 | 14867 | 2024-04-06 | 2022-04-29 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92130 | 4713 | 47 | 0 | 397 | 88 | 35670 | logfile |
✔ | 6B6H | 7059 | 2024-04-10 | 2017-10-02 | 3.9 | 4.15 | — | 3.7 | 0.008 | 0.96 | 0.0 | 0.05 | 16.11 | 0.01 | 1.944 | 6.23 | 0.03 | 8.9 | 91.0 | 0.2 | -4.47 | 0.71 | 0.48 | 1.58 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 17.37 | 0.00 | 1.115 | 13.54 | 1.09 | 9.5 | 90.4 | 0.0 | -1.68 | 1.52 | 0.85 | 0.68 | 1.42 | 72070 | 4188 | 15 | 178 | 6 | 0 | 35400 | logfile |
✔ | 7L06 | 23095 | 2024-04-11 | 2020-12-11 | 3.3 | 3.96 | — | 3.6 | 0.014 | 1.65 | 2.0 | 0.15 | 14.80 | 0.02 | 1.189 | 3.42 | 0.87 | 3.8 | 96.2 | 0.0 | -0.59 | 0.81 | 0.73 | 1.86 | 3.6 | 0.005 | 0.66 | 0.0 | 0.04 | 13.91 | 0.00 | 1.438 | 9.62 | 1.37 | 6.0 | 94.0 | 0.0 | -0.60 | 1.44 | 0.84 | 0.79 | 2.13 | 71940 | 4636 | 28 | 0 | 77 | 0 | 35068 | logfile |
✔ | 7NYX | 12657 | 2024-04-10 | 2021-03-23 | 4.6 | 7.95 | 4.57 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.46 | 0.00 | 1.844 | 11.21 | 0.00 | 3.4 | 96.6 | 0.0 | 1.74 | 0.88 | 0.79 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 17.03 | 0.00 | 0.935 | 14.24 | 0.00 | 4.4 | 95.6 | 0.0 | 1.10 | 0.54 | 0.90 | 0.83 | — | 70784 | 4186 | 18 | 104 | 6 | 0 | 34688 | logfile |
✔ | 7CPY | 30435 | 2024-04-11 | 2020-08-08 | 3.6 | 3.72 | 3.62 | 3.6 | 0.007 | 0.83 | 6.0 | 0.07 | 11.84 | 0.00 | 1.979 | 9.15 | 3.10 | 3.9 | 96.0 | 0.1 | 0.13 | 0.77 | 0.65 | 1.93 | 3.6 | 0.003 | 0.68 | 1.0 | 0.07 | 14.74 | 0.00 | 1.917 | 23.49 | 2.25 | 6.1 | 93.8 | 0.0 | -0.79 | 2.22 | 0.81 | 0.74 | 2.13 | 75556 | 5238 | 6 | 0 | 2 | 0 | 34672 | logfile |
✔ | 7CPX | 30434 | 2024-04-10 | 2020-08-08 | 2.91 | 3.01 | 2.94 | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 11.96 | 0.00 | 1.981 | 9.55 | 2.99 | 5.1 | 94.9 | 0.1 | -0.56 | 0.54 | 0.56 | 2.41 | 3.0 | 0.006 | 0.71 | 0.0 | 0.05 | 15.48 | 0.00 | 1.826 | 18.09 | 2.81 | 6.1 | 93.8 | 0.1 | -1.28 | 1.33 | 0.72 | 0.77 | 3.02 | 70068 | 4524 | 4 | 0 | 2 | 0 | 34668 | logfile |
✔ | 6PB4 | 20286 | 2024-04-10 | 2019-06-13 | 4.35 | 5.03 | — | 4.3 | 0.010 | 1.16 | 0.0 | 0.06 | 16.53 | 0.01 | 1.840 | 11.04 | 0.06 | 11.5 | 88.1 | 0.4 | -4.77 | 0.69 | 0.39 | — | 4.2 | 0.004 | 0.69 | 0.0 | 0.04 | 16.89 | 0.00 | 1.467 | 20.40 | 0.00 | 10.0 | 89.9 | 0.2 | -2.88 | 1.24 | 0.83 | 0.74 | — | 69922 | 4091 | 14 | 158 | 6 | 0 | 34409 | logfile |
✔ | 7WD9 | 32435 | 2024-04-10 | 2021-12-21 | 3.7 | 4.02 | — | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 7.35 | 0.00 | 1.967 | 2.78 | 0.00 | 4.2 | 95.6 | 0.1 | -1.79 | 0.57 | 0.42 | 0.74 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 13.64 | 0.00 | 1.827 | 11.38 | 1.34 | 4.5 | 95.4 | 0.1 | -0.67 | 1.31 | 0.75 | 0.68 | 0.98 | 69720 | 4533 | 9 | 0 | 0 | 0 | 34404 | logfile |