Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U06	26255	2022-07-05	2022-02-17	4.2	3.74	—	3.7	0.005	0.86	0.0	0.05	14.08	0.01	1.997	5.39	0.01	11.1	88.8	0.1	-2.22	0.50	0.68	—	3.7	0.003	0.59	0.0	0.04	14.19	0.00	1.902	11.16	0.03	10.8	89.0	0.2	-1.85	0.51	0.51	0.70	—	124310	7391	31	0	764	0	60450	logfile
✔	7oHT	12908	2022-07-06	2021-05-11	4.7	6.83	4.99	3.5	0.002	0.48	0.0	0.04	17.51	0.00	1.855	6.87	1.28	5.3	94.6	0.1	0.83	0.81	0.61	—	3.4	0.003	0.58	0.0	0.03	17.82	0.00	1.808	19.47	0.00	8.9	91.0	0.1	-0.79	1.74	0.86	0.78	—	135365	5154	30	1618	3	0	59714	logfile
✘	6PJ6	20353	2022-07-11	2019-06-27	2.2	2.48	—	2.5	0.011	1.06	14.0	0.06	15.08	0.01	1.148	5.33	2.25	5.6	94.4	0.1	-2.65	0.62	0.85	4.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	154542	3356	67	3016	187	3897	59624	logfile
✘	6RW4	10021	2022-07-05	2019-06-03	2.97	2.14	2.97	2.8	0.007	0.65	0.0	0.04	13.10	0.00	1.206	2.52	0.06	3.0	97.0	0.1	-2.57	0.85	0.84	4.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	128080	5920	47	955	85	59	59211	logfile
✔	5WP9	8874	2022-07-04	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.24	0.0	0.05	10.03	0.02	1.918	2.77	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	4.8	0.003	0.66	0.0	0.04	12.33	0.01	1.866	14.52	0.00	4.5	95.2	0.3	0.15	1.85	0.50	0.69	—	117048	7352	24	0	16	0	59080	logfile
✔	6SKL	10227	2022-07-04	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.18	0.02	1.901	0.37	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.003	0.61	0.0	0.04	16.50	0.00	1.829	8.29	0.23	4.0	96.0	0.0	0.68	3.48	0.74	0.78	1.67	118181	7251	24	59	11	0	58997	logfile
✘	7LVK	23539	2022-07-10	2021-02-25	2.2	2.31	—	2.4	0.009	0.90	8.0	0.06	14.52	0.01	1.145	2.50	0.81	5.1	94.8	0.2	-2.34	0.64	0.86	5.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151436	3222	63	3016	181	2716	58704	logfile
✔	6S12	10078	2022-07-08	2019-06-18	3.2	3.25	—	3.2	0.015	1.21	0.0	0.06	19.57	0.01	1.590	12.97	15.92	14.1	85.8	0.1	-5.24	0.61	0.59	1.73	3.2	0.005	0.66	0.0	0.04	18.82	0.01	1.747	11.39	0.84	9.7	90.3	0.0	-2.79	1.38	0.74	0.74	1.90	146017	3125	30	3020	0	0	57352	logfile
✘	6S0Z	10077	2022-07-08	2019-06-18	2.3	2.39	—	2.4	0.006	0.77	0.0	0.05	16.25	0.00	1.178	2.94	6.96	7.1	92.8	0.0	-2.89	0.62	0.73	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	145796	3106	31	3019	1	0	57218	logfile
✘	7oWG	13097	2022-07-04	2021-06-18	4.7	4.05	4.73	3.6	0.015	1.89	22.0	0.09	15.58	0.01	2.418	0.82	1.23	7.5	92.3	0.2	-3.00	0.81	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114114	7078	8	0	110	0	57040	logfile
✔	6oiF	20076	2022-07-04	2019-04-09	4.4	4.70	—	4.6	0.008	1.21	0.0	0.05	9.73	0.01	1.596	6.18	0.00	11.4	88.6	0.0	-4.69	0.65	0.66	—	4.6	0.003	0.59	0.0	0.04	12.05	0.00	1.873	18.72	0.00	7.6	92.4	0.0	-1.25	1.71	0.68	0.77	—	115025	7050	49	0	25	0	56750	logfile
✔	6TMG	10520	2022-07-04	2019-12-04	2.8	2.79	2.73	2.8	0.008	0.92	0.0	0.04	15.59	0.00	1.898	3.40	0.69	2.9	97.1	0.0	-0.62	0.73	0.86	4.49	2.8	0.003	0.55	0.0	0.04	16.94	0.00	1.939	7.73	1.30	3.0	97.0	0.0	1.97	1.09	0.75	0.89	3.82	116594	7122	68	0	44	0	56046	logfile
✔	7oHU	12909	2022-07-05	2021-05-11	3.7	4.68	3.77	3.4	0.008	0.53	1.0	0.03	16.12	0.00	1.811	5.50	0.45	3.5	96.5	0.0	1.01	0.83	0.76	1.33	3.4	0.007	0.57	1.0	0.03	17.28	0.00	1.756	14.56	0.36	7.3	92.7	0.0	-0.49	1.32	0.85	0.81	1.56	127652	4202	29	1840	2	0	54773	logfile
✔	7oHY	12913	2022-07-05	2021-05-11	3.9	4.70	3.99	3.1	0.002	0.44	0.0	0.03	16.24	0.00	1.780	5.73	0.61	4.2	95.8	0.0	1.53	0.82	0.72	0.73	3.2	0.007	0.69	1.0	0.04	18.00	0.00	1.744	19.64	0.29	8.0	91.9	0.1	-0.62	1.73	0.84	0.80	0.89	125318	4067	28	1837	2	0	53608	logfile
✘	7RMC	24560	2022-07-11	2021-07-27	3.5	3.50	—	3.6	0.013	2.05	44.0	0.15	17.28	0.02	2.304	1.91	1.65	4.6	95.1	0.4	-1.78	0.26	0.38	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106824	6732	24	0	24	0	53244	logfile
✘	7RL5	24516	2022-07-05	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.17	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✘	7RL0	24512	2022-07-05	2021-07-22	2.8	2.88	—	2.9	0.012	1.98	48.0	0.11	14.53	0.02	1.224	0.70	1.08	2.5	97.3	0.2	-1.35	0.40	0.48	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106080	6708	24	0	48	0	52716	logfile
✔	6RQC	4980	2022-07-07	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.16	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.004	0.70	0.0	0.04	17.01	0.00	1.841	16.11	0.00	10.9	89.1	0.0	-2.26	3.24	0.80	0.70	—	105223	6174	23	176	15	0	51978	logfile
✘	6G2H	4343	2022-07-07	2018-03-23	4.6	4.69	—	4.5	0.013	1.94	46.0	0.11	13.54	0.01	1.921	14.14	2.29	8.3	91.0	0.7	-3.04	0.79	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103896	6454	6	0	0	0	51852	logfile
✔	6CB8	7449	2022-07-06	2018-02-02	3.8	4.11	—	4.7	0.006	0.84	0.0	0.05	11.53	0.01	1.542	37.70	0.00	18.6	81.4	0.0	-5.72	0.54	0.27	0.20	4.0	0.011	0.99	1.0	0.04	15.21	0.01	1.760	22.20	0.27	11.3	88.7	0.0	-3.56	1.96	0.64	0.51	0.20	100224	6210	27	0	27	0	50436	logfile

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