Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J6B	2566	2021-09-06	2014-01-22	3.2	3.23	—	3.2	0.010	1.18	13.0	0.10	18.54	0.01	0.862	5.65	10.99	6.4	92.0	1.6	-1.19	0.63	0.78	2.15	3.2	0.006	0.70	0.0	0.05	17.56	0.01	1.717	9.60	0.90	6.6	93.1	0.3	-0.08	0.82	0.75	0.85	2.50	195137	6712	46	2733	113	0	83818	logfile
✔	5WK5	8855	2021-09-02	2017-07-24	4.2	4.02	—	4.0	0.010	1.08	0.0	0.05	9.64	0.01	1.909	5.09	0.00	9.8	90.2	0.0	-2.83	0.34	0.73	—	4.0	0.004	0.63	0.0	0.04	14.17	0.00	1.957	18.33	0.00	9.0	91.0	0.0	1.52	1.24	0.37	0.74	—	161786	11029	41	0	0	0	80606	logfile
✔	5WK6	8856	2021-09-02	2017-07-24	4.3	4.51	—	4.5	0.013	1.25	0.0	0.05	10.13	0.01	2.029	21.01	0.00	7.2	92.8	0.0	-3.04	0.36	0.74	—	4.5	0.004	0.67	0.0	0.04	14.52	0.00	1.876	20.51	0.06	9.2	90.8	0.0	1.42	3.42	0.39	0.76	—	161663	11029	41	0	0	0	80524	logfile
✔	6YW5	10958	2021-09-02	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.48	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.003	0.51	0.0	0.03	14.01	0.00	1.907	4.18	0.59	2.2	97.8	0.0	1.39	0.64	0.73	0.88	3.97	167548	7528	47	1435	120	0	76656	logfile
✔	6oJ3	20086	2021-09-10	2019-04-10	4.5	4.52	4.52	4.5	0.010	1.29	0.0	0.07	10.21	0.01	2.062	3.53	0.01	9.0	91.0	0.0	-3.41	0.63	0.73	—	4.4	0.004	0.67	0.0	0.04	13.83	0.00	1.841	16.62	0.02	8.8	91.2	0.0	-0.99	2.19	0.65	0.78	—	148557	9072	11	0	0	0	74462	logfile
✔	6oJ4	20087	2021-09-09	2019-04-10	3.3	3.39	3.34	3.3	0.011	0.90	0.0	0.05	10.20	0.01	2.007	3.86	0.01	9.3	90.7	0.0	-3.56	0.71	0.83	4.12	3.3	0.004	0.65	0.0	0.04	15.60	0.00	1.900	8.02	0.29	6.8	93.2	0.0	-0.12	1.74	0.70	0.84	3.23	148556	9072	11	0	0	0	74461	logfile
✔	6oJ6	20089	2021-09-10	2019-04-10	4.2	4.24	4.28	4.2	0.010	1.26	2.0	0.06	10.51	0.01	2.060	3.07	0.01	9.2	90.7	0.1	-3.44	0.64	0.75	—	4.2	0.004	0.66	0.0	0.04	13.89	0.00	1.824	13.10	0.01	8.5	91.5	0.0	-0.61	1.29	0.65	0.80	—	148661	9030	13	24	0	0	74396	logfile
✔	6GSi	0056	2021-09-10	2018-06-14	3.75	4.09	—	4.0	0.011	0.93	0.0	0.06	9.92	0.01	1.076	9.17	0.71	15.3	84.5	0.2	-5.00	0.55	0.81	2.93	4.0	0.003	0.64	0.0	0.04	13.43	0.00	1.889	10.55	0.25	9.2	90.8	0.1	-2.07	1.01	0.57	0.83	2.63	150378	9831	48	0	12	0	74247	logfile
✔	6YL3	10835	2021-09-11	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.003	0.71	0.0	0.05	16.22	0.00	1.819	5.07	1.52	3.6	96.2	0.1	0.08	0.82	0.81	0.86	6.95	150156	9552	84	0	24	3672	73044	logfile
✘	6DQV	7984	2021-09-06	2018-06-11	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140358	8752	8	0	8	0	70218	logfile
✘	6DR0	7987	2021-09-06	2018-06-11	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139988	8750	8	0	8	0	70013	logfile
✘	6DQS	7983	2021-09-06	2018-06-11	4.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139314	8750	8	0	8	0	69639	logfile
✘	6TCL	10461	2021-09-07	2019-11-06	3.2	3.58	3.22	3.4	0.005	1.02	0.0	0.04	19.84	0.01	1.201	5.37	0.00	3.5	96.4	0.1	-2.83	0.76	0.79	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	169167	9058	88	0	578	0	69563	logfile
✘	6DR2	7988	2021-09-06	2018-06-11	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139084	8764	8	0	12	0	69544	logfile
✘	6DRA	7991	2021-09-06	2018-06-11	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139084	8764	8	0	12	0	69544	logfile
✘	6DQN	7981	2021-09-06	2018-06-11	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138876	8744	8	0	8	0	69396	logfile
✘	6DRC	7994	2021-09-06	2018-06-11	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138860	8744	8	0	16	0	69384	logfile
✘	6DQJ	7978	2021-09-06	2018-06-11	3.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138477	8724	8	0	4	0	69265	logfile
✔	5L4G	4002	2021-09-05	2016-05-25	3.9	4.09	—	4.0	0.007	0.97	2.0	0.05	15.50	0.01	1.788	5.65	3.00	9.6	88.5	1.9	-5.01	0.65	0.86	2.39	4.0	0.006	0.76	0.0	0.04	17.04	0.01	1.796	13.16	1.05	6.9	92.9	0.2	-0.66	2.92	0.63	0.82	1.83	135488	8637	40	0	11	0	67796	logfile
✘	7KZP	23085	2021-09-16	2020-12-10	3.1	3.43	—	3.4	0.013	1.47	2.0	0.07	15.82	0.01	1.936	3.39	0.59	8.6	90.8	0.6	-3.29	0.73	0.72	2.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129805	8202	16	0	19	0	65343	logfile

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