Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TE0	10473	2023-04-29	2019-11-10	3.92	3.97	3.90	3.8	0.007	0.81	0.0	0.05	11.47	0.01	1.432	3.80	0.00	4.0	95.9	0.0	-3.76	0.80	0.81	2.25	3.8	0.003	0.59	0.0	0.04	14.19	0.00	1.737	11.29	0.10	4.9	95.1	0.0	-0.65	0.87	0.80	0.82	1.98	79188	5136	29	0	11	0	39835	logfile
✔	8B0G	15780	2023-04-29	2022-09-07	3.3	3.50	3.22	3.1	0.009	0.80	0.0	0.07	14.55	0.01	1.687	5.69	0.34	5.2	94.8	0.0	-0.94	0.84	0.81	2.69	3.1	0.006	0.64	0.0	0.05	14.55	0.00	1.916	7.41	0.20	5.5	94.5	0.0	-0.45	0.86	0.86	0.86	2.61	79270	5113	15	0	10	0	38789	logfile
✔	7UiZ	26558	2023-04-28	2022-03-29	3.24	3.45	—	3.4	0.004	0.75	0.0	0.05	13.43	0.00	2.014	2.79	0.00	0.1	99.9	0.0	-1.03	0.60	0.81	2.98	3.4	0.003	0.58	0.0	0.04	16.75	0.00	1.831	9.23	0.22	2.7	97.3	0.0	0.26	0.91	0.60	0.85	2.99	76521	4837	20	0	22	0	38390	logfile
✔	7UJ0	26559	2023-04-28	2022-03-29	3.26	3.50	—	3.4	0.005	0.83	0.0	0.04	14.20	0.00	2.005	3.09	0.00	0.5	99.5	0.0	-1.04	0.61	0.82	3.29	3.4	0.004	0.61	0.0	0.04	16.73	0.00	1.774	10.35	0.34	3.5	96.5	0.0	-0.01	0.72	0.62	0.86	2.98	76314	4823	20	0	21	0	38308	logfile
✔	7UiX	26556	2023-04-28	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.12	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.82	0.01	1.703	9.66	0.32	3.3	96.7	0.0	0.33	0.82	0.60	0.84	2.84	76307	4820	20	0	23	0	38286	logfile
✔	7UiY	26557	2023-04-28	2022-03-29	3.22	3.19	—	3.2	0.006	0.86	0.0	0.04	14.26	0.00	1.981	3.47	0.00	0.3	99.7	0.0	-0.25	0.60	0.81	3.14	3.2	0.003	0.58	0.0	0.04	16.78	0.00	1.873	9.28	0.15	2.7	97.3	0.0	0.45	0.68	0.61	0.85	2.98	76262	4819	20	0	17	0	38283	logfile
✔	7UiV	26554	2023-04-28	2022-03-29	3.38	3.40	—	3.4	0.004	0.81	0.0	0.05	14.78	0.00	2.004	2.73	0.00	0.3	99.7	0.0	1.05	0.59	0.77	2.52	3.4	0.003	0.59	0.0	0.04	17.24	0.00	1.819	9.49	0.27	2.7	97.3	0.0	0.47	1.24	0.60	0.83	2.47	76152	4805	20	0	18	0	38252	logfile
✔	7UiW	26555	2023-04-28	2022-03-29	3.33	3.27	—	3.3	0.004	0.77	0.0	0.04	13.74	0.00	2.005	2.75	0.02	0.3	99.7	0.0	-0.17	0.59	0.75	2.41	3.3	0.003	0.55	0.0	0.04	16.63	0.00	1.810	9.34	0.47	2.6	97.4	0.0	0.28	0.83	0.61	0.82	2.57	75891	4792	19	0	17	0	38115	logfile
✔	7oXo	13102	2023-04-28	2021-06-22	3.9	4.39	—	4.1	0.013	1.34	0.0	0.07	13.05	0.01	1.986	8.38	0.02	9.3	90.7	0.0	-2.64	0.87	0.81	1.07	4.1	0.003	0.61	0.0	0.04	13.93	0.00	1.938	9.72	0.20	4.5	95.5	0.0	-0.51	1.14	0.86	0.80	0.97	74729	4656	12	0	6	0	37715	logfile
✔	7NGL	12315	2023-04-28	2021-02-09	3.8	4.04	—	3.9	0.012	1.50	0.0	0.07	13.27	0.01	2.054	6.08	0.02	9.2	90.8	0.0	-2.53	0.76	0.74	1.38	3.8	0.003	0.61	0.0	0.04	14.40	0.00	1.910	8.52	0.02	4.9	95.1	0.0	-0.81	0.66	0.78	0.77	1.27	74735	4656	12	0	6	0	37715	logfile
✔	7NG4	12307	2023-04-28	2021-02-08	4.4	5.07	4.36	3.9	0.010	1.37	0.0	0.06	13.12	0.01	1.977	6.38	0.12	7.3	92.7	0.0	-2.19	0.89	0.78	—	3.9	0.003	0.57	0.0	0.04	12.78	0.00	1.773	12.19	0.00	4.7	95.3	0.0	-0.92	0.97	0.88	0.79	—	74624	4656	13	0	31	0	37485	logfile
✔	7NFY	12306	2023-04-28	2021-02-08	3.9	4.30	3.98	3.9	0.011	1.27	1.0	0.07	12.77	0.01	2.011	5.76	0.00	8.5	91.5	0.0	-2.41	0.85	0.79	1.54	3.9	0.003	0.55	0.0	0.05	13.71	0.00	1.759	10.00	0.10	4.6	95.4	0.0	-0.74	0.38	0.85	0.79	1.39	74644	4656	13	0	35	0	37485	logfile
✔	7NG5	12308	2023-04-28	2021-02-08	3.8	4.19	3.88	4.0	0.013	1.31	0.0	0.07	13.35	0.01	1.977	5.18	0.15	7.6	92.4	0.0	-2.18	0.79	0.80	1.59	4.0	0.003	0.54	0.0	0.04	14.15	0.00	1.730	8.85	0.05	5.2	94.8	0.0	-0.52	0.90	0.79	0.80	1.25	74579	4656	13	0	22	0	37485	logfile
✔	7NJL	12382	2023-04-28	2021-02-17	2.71	2.49	—	2.2	0.003	0.51	0.0	0.04	14.71	0.00	2.057	6.48	0.00	2.4	97.6	0.0	1.54	0.85	0.86	3.77	2.2	0.004	0.54	0.0	0.04	16.14	0.00	1.731	7.10	0.65	2.7	97.2	0.0	1.49	0.33	0.86	0.88	3.74	74775	4944	31	0	11	16	37414	logfile
✔	7NJK	12377	2023-04-28	2021-02-17	2.52	2.49	—	2.2	0.004	0.51	0.0	0.04	14.52	0.00	2.061	4.73	0.00	2.4	97.6	0.1	1.64	0.85	0.87	4.35	2.2	0.003	0.50	0.0	0.04	15.66	0.00	1.782	5.45	0.31	2.2	97.7	0.0	1.90	1.68	0.86	0.89	4.10	74650	4934	31	0	11	16	37359	logfile
✔	7NJQ	12407	2023-04-28	2021-02-17	2.67	2.56	—	2.2	0.004	0.52	0.0	0.04	14.45	0.00	1.901	5.62	0.00	2.1	97.8	0.1	1.78	0.85	0.87	4.10	2.2	0.005	0.55	0.0	0.04	15.81	0.00	1.670	5.87	0.65	2.5	97.5	0.1	1.45	0.90	0.86	0.89	4.13	74669	4936	31	0	11	16	37357	logfile
✔	7NJS	12417	2023-04-28	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.675	4.83	1.64	2.6	97.4	0.0	1.82	0.24	0.86	0.90	4.19	74642	4932	31	0	11	16	37346	logfile
✔	7NJo	12397	2023-04-28	2021-02-17	2.92	2.77	—	2.7	0.004	0.53	0.0	0.04	14.87	0.00	2.080	8.25	0.00	2.9	97.1	0.0	1.46	0.85	0.85	3.17	2.6	0.004	0.56	0.0	0.04	16.40	0.00	1.698	9.09	0.78	2.8	97.2	0.0	1.56	0.37	0.86	0.88	3.10	74641	4934	31	0	11	16	37345	logfile
✔	7NJM	12387	2023-04-28	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	14.84	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.003	0.50	0.0	0.04	16.33	0.00	1.756	6.60	0.49	2.3	97.6	0.0	1.55	0.90	0.86	0.88	3.33	74611	4932	31	0	11	16	37328	logfile
✔	7NJR	12412	2023-04-27	2021-02-17	2.56	2.54	—	2.4	0.004	0.52	0.0	0.04	14.46	0.00	1.940	5.25	0.00	3.0	96.9	0.1	1.36	0.85	0.87	4.22	2.4	0.003	0.51	0.0	0.04	15.61	0.00	1.742	5.57	0.57	2.9	97.0	0.1	1.66	0.88	0.86	0.89	4.07	74587	4930	31	0	11	16	37321	logfile

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