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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9Y | 6311 | 2024-03-25 | 2015-03-23 | 3.9 | 3.83 | — | 3.9 | 0.006 | 0.84 | 0.0 | 0.04 | 23.32 | 0.02 | 0.974 | 10.29 | 3.21 | 10.9 | 85.6 | 3.4 | -3.83 | 0.76 | 0.77 | 0.68 | 3.7 | 0.005 | 0.86 | 1.0 | 0.04 | 23.47 | 0.01 | 1.901 | 23.67 | 7.60 | 11.2 | 88.1 | 0.6 | -2.24 | 1.55 | 0.79 | 0.84 | 0.85 | 148915 | 6657 | 58 | 4645 | 0 | 0 | 0 | logfile |
✔ | 8PHJ | 17667 | 2024-03-01 | 2023-06-20 | 3.67 | 3.12 | — | 3.1 | 0.007 | 0.56 | 0.0 | 0.03 | 21.88 | 0.02 | 1.602 | 3.56 | 2.16 | 3.4 | 96.6 | 0.0 | -0.44 | 0.76 | 0.81 | 3.82 | 3.1 | 0.008 | 0.74 | 0.0 | 0.04 | 22.11 | 0.01 | 1.781 | 5.32 | 3.81 | 4.0 | 96.0 | 0.0 | 0.33 | 0.39 | 0.76 | 0.80 | 3.17 | 152518 | 6749 | 68 | 4644 | 244 | 0 | 0 | logfile |
✔ | 6YST | 10907 | 2024-03-23 | 2020-04-23 | 3.2 | 3.49 | 3.06 | 3.3 | 0.008 | 0.87 | 13.0 | 0.05 | 24.40 | 0.02 | 1.346 | 20.72 | 0.48 | 13.5 | 86.1 | 0.4 | -4.56 | 0.81 | 0.84 | 2.11 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 24.11 | 0.01 | 1.786 | 19.54 | 5.13 | 11.4 | 88.5 | 0.1 | -2.26 | 0.39 | 0.81 | 0.85 | 1.67 | 146847 | 6105 | 68 | 4643 | 257 | 0 | 0 | logfile |
✔ | 5o2R | 3730 | 2024-03-24 | 2017-05-22 | 3.4 | 3.45 | — | 3.4 | 0.011 | 1.26 | 7.0 | 0.06 | 23.01 | 0.01 | 0.776 | 7.13 | 1.03 | 11.6 | 87.9 | 0.5 | -5.11 | 0.77 | 0.80 | 2.61 | 3.4 | 0.006 | 0.73 | 0.0 | 0.04 | 23.03 | 0.01 | 2.002 | 12.47 | 5.33 | 11.2 | 88.7 | 0.1 | -2.57 | 1.20 | 0.79 | 0.83 | 1.67 | 147985 | 6205 | 58 | 4643 | 0 | 0 | 0 | logfile |
✔ | 6GXo | 0082 | 2024-03-27 | 2018-06-27 | 3.9 | 4.77 | — | 4.3 | 0.004 | 0.82 | 4.0 | 0.04 | 22.42 | 0.01 | 0.695 | 7.13 | 0.15 | 8.2 | 91.3 | 0.5 | -3.98 | 0.85 | 0.83 | 0.32 | 4.3 | 0.003 | 0.69 | 0.0 | 0.03 | 23.42 | 0.00 | 2.039 | 21.91 | 5.57 | 9.4 | 90.3 | 0.2 | -1.77 | 1.78 | 0.87 | 0.87 | 0.66 | 151479 | 6643 | 59 | 4643 | 1 | 0 | 0 | logfile |
✔ | 6oRL | 20174 | 2024-03-22 | 2019-04-30 | 3.5 | 4.53 | — | 3.4 | 0.009 | 0.88 | 0.0 | 0.05 | 23.65 | 0.02 | 1.473 | 10.92 | 0.33 | 6.0 | 93.9 | 0.1 | -3.76 | 0.91 | 0.87 | 1.33 | 3.4 | 0.005 | 0.69 | 0.0 | 0.04 | 23.56 | 0.01 | 1.779 | 26.68 | 3.84 | 5.5 | 94.5 | 0.0 | -0.84 | 3.38 | 0.91 | 0.87 | 0.96 | 146039 | 5890 | 62 | 4642 | 296 | 0 | 0 | logfile |
✔ | 6oSK | 20184 | 2024-03-23 | 2019-05-01 | 3.6 | 3.41 | — | 3.3 | 0.008 | 0.86 | 1.0 | 0.05 | 22.81 | 0.02 | 1.837 | 5.18 | 0.51 | 5.2 | 94.6 | 0.1 | -4.40 | 0.78 | 0.85 | 2.75 | 3.3 | 0.007 | 0.73 | 0.0 | 0.04 | 23.11 | 0.01 | 1.771 | 14.43 | 5.76 | 5.9 | 94.0 | 0.0 | -1.29 | 1.73 | 0.78 | 0.85 | 1.96 | 146659 | 5969 | 65 | 4642 | 309 | 0 | 0 | logfile |
✔ | 6oUo | 20204 | 2024-03-23 | 2019-05-05 | 3.7 | 4.99 | — | 3.3 | 0.007 | 0.84 | 1.0 | 0.04 | 23.73 | 0.02 | 1.584 | 12.06 | 0.36 | 5.1 | 94.8 | 0.1 | -3.86 | 0.89 | 0.75 | 0.10 | 3.3 | 0.003 | 0.73 | 0.0 | 0.03 | 24.06 | 0.01 | 1.860 | 32.69 | 4.25 | 5.8 | 94.2 | 0.0 | -1.45 | 2.64 | 0.92 | 0.84 | 0.44 | 146867 | 6028 | 61 | 4642 | 14 | 0 | 0 | logfile |
✔ | 6oST | 20188 | 2024-03-23 | 2019-05-02 | 4.2 | 5.81 | — | 3.3 | 0.009 | 0.99 | 3.0 | 0.05 | 24.18 | 0.02 | 1.577 | 18.84 | 0.37 | 6.9 | 93.0 | 0.1 | -3.80 | 0.92 | 0.87 | — | 3.3 | 0.007 | 0.81 | 0.0 | 0.04 | 23.84 | 0.01 | 1.812 | 48.95 | 0.00 | 8.3 | 91.7 | 0.0 | -1.55 | 3.35 | 0.92 | 0.87 | — | 146620 | 5996 | 61 | 4642 | 13 | 0 | 0 | logfile |
✔ | 6oT3 | 20193 | 2024-03-23 | 2019-05-02 | 3.9 | 5.27 | — | 3.3 | 0.007 | 0.84 | 2.0 | 0.04 | 23.72 | 0.02 | 1.940 | 11.90 | 0.28 | 5.0 | 94.9 | 0.1 | -3.85 | 0.92 | 0.88 | 0.62 | 3.3 | 0.005 | 0.71 | 0.0 | 0.03 | 23.69 | 0.01 | 1.813 | 31.56 | 4.51 | 6.3 | 93.7 | 0.0 | -1.25 | 1.77 | 0.92 | 0.88 | 0.46 | 146899 | 6031 | 62 | 4642 | 14 | 0 | 0 | logfile |
✔ | 5MGP | 3508 | 2024-03-23 | 2016-11-21 | 3.1 | 3.19 | — | 3.1 | 0.007 | 0.91 | 0.0 | 0.05 | 22.76 | 0.01 | 2.151 | 3.98 | 0.59 | 9.0 | 90.7 | 0.3 | -4.84 | 0.81 | 0.85 | 3.33 | 3.1 | 0.005 | 0.66 | 0.0 | 0.04 | 22.87 | 0.00 | 1.947 | 9.94 | 4.86 | 9.0 | 90.7 | 0.2 | -1.80 | 1.20 | 0.80 | 0.87 | 2.37 | 147155 | 6081 | 56 | 4642 | 0 | 0 | 0 | logfile |
✔ | 6oSQ | 20187 | 2024-03-23 | 2019-05-02 | 3.5 | 3.55 | — | 3.5 | 0.008 | 0.88 | 1.0 | 0.05 | 22.62 | 0.02 | 2.007 | 4.45 | 0.37 | 6.0 | 94.0 | 0.1 | -4.90 | 0.83 | 0.87 | 2.66 | 3.5 | 0.008 | 0.81 | 0.0 | 0.04 | 22.98 | 0.01 | 1.580 | 12.92 | 3.85 | 6.4 | 93.6 | 0.0 | -1.67 | 0.55 | 0.80 | 0.86 | 1.89 | 146756 | 5966 | 68 | 4642 | 438 | 0 | 0 | logfile |
✔ | 6oRE | 20173 | 2024-03-21 | 2019-04-30 | 2.9 | 3.38 | — | 3.0 | 0.008 | 0.76 | 2.0 | 0.04 | 22.73 | 0.02 | 1.454 | 4.55 | 0.34 | 3.4 | 96.5 | 0.1 | -3.76 | 0.91 | 0.91 | 3.69 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 23.01 | 0.01 | 1.802 | 12.72 | 4.24 | 4.0 | 96.0 | 0.0 | -0.15 | 0.53 | 0.91 | 0.92 | 2.75 | 144774 | 5710 | 67 | 4642 | 438 | 0 | 0 | logfile |
✔ | 7NWT | 12635 | 2024-03-26 | 2021-03-17 | 2.66 | 2.63 | — | 2.6 | 0.011 | 0.84 | 0.0 | 0.05 | 22.59 | 0.02 | 1.145 | 4.87 | 2.95 | 2.6 | 97.4 | 0.0 | -2.35 | 0.85 | 0.88 | 4.38 | 2.7 | 0.002 | 0.59 | 0.0 | 0.03 | 22.65 | 0.01 | 1.177 | 7.32 | 3.20 | 2.8 | 97.2 | 0.0 | 0.27 | 0.30 | 0.87 | 0.88 | 3.41 | 149932 | 6355 | 74 | 4641 | 439 | 2 | 0 | logfile |
✔ | 5KCS | 8238 | 2024-03-25 | 2016-06-06 | 3.9 | 4.07 | — | 4.0 | 0.006 | 0.51 | 0.0 | 0.04 | 22.06 | 0.02 | 1.981 | 9.49 | 0.19 | 8.8 | 88.6 | 2.6 | -3.12 | 0.61 | 0.61 | 0.64 | 4.0 | 0.005 | 0.83 | 0.0 | 0.04 | 22.95 | 0.01 | 1.993 | 18.74 | 5.38 | 10.1 | 89.3 | 0.6 | -2.11 | 1.93 | 0.71 | 0.81 | 0.90 | 148945 | 6656 | 59 | 4641 | 1 | 0 | 0 | logfile |
✔ | 6GWT | 0076 | 2024-03-27 | 2018-06-25 | 3.8 | 4.53 | — | 4.2 | 0.004 | 0.84 | 5.0 | 0.04 | 22.39 | 0.01 | 1.272 | 6.02 | 0.19 | 8.2 | 91.3 | 0.5 | -4.05 | 0.85 | 0.83 | 0.58 | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 23.43 | 0.01 | 1.975 | 25.61 | 6.83 | 11.0 | 88.6 | 0.4 | -1.97 | 1.77 | 0.87 | 0.88 | 0.79 | 151484 | 6670 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 6GXM | 0080 | 2024-03-27 | 2018-06-27 | 3.8 | 4.73 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.04 | 22.40 | 0.01 | 1.322 | 6.07 | 0.20 | 8.4 | 91.2 | 0.4 | -4.08 | 0.85 | 0.83 | 0.31 | 4.3 | 0.005 | 0.73 | 0.0 | 0.04 | 23.42 | 0.01 | 2.033 | 27.01 | 5.68 | 10.3 | 89.4 | 0.2 | -1.79 | 1.78 | 0.87 | 0.87 | 0.41 | 151394 | 6643 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 7CPJ | 30431 | 2024-03-22 | 2020-08-07 | 3.3 | 3.39 | — | 3.3 | 0.010 | 0.91 | 0.0 | 0.05 | 23.45 | 0.02 | 1.356 | 12.80 | 0.29 | 13.8 | 85.7 | 0.5 | -4.55 | 0.73 | 0.85 | 2.28 | 3.3 | 0.007 | 0.81 | 3.0 | 0.04 | 23.27 | 0.01 | 1.849 | 12.35 | 6.42 | 11.6 | 88.1 | 0.3 | -2.23 | 0.35 | 0.74 | 0.87 | 1.87 | 145941 | 5951 | 58 | 4639 | 0 | 0 | 0 | logfile |
✘ | 6YEF | 10791 | 2024-03-20 | 2020-03-24 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 141837 | 5351 | 60 | 4639 | 288 | 0 | 0 | logfile |
✘ | 7o1C | 12695 | 2024-03-24 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 22.52 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |