Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7ST6	25420	2023-08-31	2021-11-12	3.0	3.74	3.18	3.0	0.008	0.96	1.0	0.08	15.23	0.01	1.404	9.99	0.71	10.6	89.0	0.4	-4.95	0.90	0.84	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147982	5721	58	4811	0	0	0	logfile
✔	5JTE	8175	2023-08-29	2016-05-09	3.6	3.13	—	3.2	0.015	1.75	0.0	0.07	12.22	0.01	1.432	6.25	0.00	7.4	90.0	2.7	-1.94	0.53	0.56	0.78	3.1	0.006	0.90	0.0	0.05	16.17	0.01	2.025	16.45	1.18	10.2	89.1	0.8	-2.75	1.48	0.58	0.68	1.21	146760	5625	59	4786	1	0	0	logfile
✘	5LZE	4125	2023-08-31	2016-09-29	3.5	3.59	3.51	3.5	0.012	1.24	14.0	0.08	14.19	0.02	2.158	3.96	0.72	7.7	90.1	2.2	-3.34	0.76	0.87	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148018	5817	59	4782	2	0	0	logfile
✔	5LZF	4126	2023-08-31	2016-09-29	4.6	4.86	4.79	4.6	0.008	1.17	5.0	0.08	14.20	0.02	2.141	4.71	0.02	7.1	90.8	2.1	-2.74	0.83	0.85	—	4.6	0.004	0.77	0.0	0.04	16.15	0.01	1.982	27.08	0.02	8.8	90.8	0.5	-2.04	2.48	0.83	0.85	—	148005	5824	58	4779	2	0	0	logfile
✔	6HTQ	0270	2023-08-29	2018-10-04	4.5	4.18	—	4.1	0.008	0.89	0.0	0.04	17.41	0.01	2.213	8.09	0.32	10.3	89.4	0.3	-4.50	0.83	0.79	—	4.1	0.004	0.70	0.0	0.04	17.81	0.01	1.973	21.56	0.06	11.1	88.8	0.1	-2.67	0.75	0.83	0.79	—	146680	5640	53	4770	0	0	0	logfile
✔	5V93	8645	2023-08-25	2017-03-22	4.0	4.15	—	4.0	0.010	1.09	3.0	0.05	10.71	0.01	1.951	4.66	0.00	10.1	89.2	0.7	-2.37	0.83	0.74	—	4.0	0.004	0.81	4.0	0.04	12.44	0.01	1.571	18.25	0.67	9.4	90.3	0.2	-2.11	0.54	0.85	0.77	—	143580	5328	52	4752	0	0	0	logfile
✔	7SSW	25415	2023-08-30	2021-11-11	3.8	3.98	4.43	3.9	0.008	1.03	0.0	0.09	15.74	0.01	1.525	13.50	0.87	14.4	85.2	0.4	-5.23	0.77	0.73	0.84	3.9	0.008	0.97	0.0	0.05	18.08	0.01	1.899	33.29	1.77	16.9	82.8	0.2	-3.69	1.33	0.78	0.74	0.76	147596	5885	56	4736	0	0	0	logfile
✔	7LV0	23528	2023-08-30	2021-02-23	3.2	3.59	—	3.2	0.012	1.25	0.0	0.10	15.70	0.02	1.414	29.31	3.83	19.0	79.0	2.0	-4.79	0.81	0.82	1.87	3.2	0.004	0.71	0.0	0.04	16.41	0.01	2.025	16.84	0.98	13.7	86.2	0.1	-2.71	0.50	0.81	0.83	1.17	147330	5851	60	4734	0	0	0	logfile
✔	8A3L	15116	2023-08-31	2022-06-08	3.42	3.28	3.30	3.3	0.008	0.76	2.0	0.05	15.62	0.02	1.607	10.99	2.12	7.5	91.9	0.6	-0.87	0.78	0.80	2.45	3.3	0.003	0.66	0.0	0.04	15.97	0.01	1.744	10.84	0.35	5.0	94.9	0.1	-0.71	1.06	0.84	0.85	2.10	147640	5876	65	4722	316	0	0	logfile
✔	7QGH	13955	2023-08-31	2021-12-08	4.48	9.26	—	4.8	0.016	1.62	58.0	0.11	15.10	0.01	0.197	5.44	1.41	8.8	90.2	1.0	-4.05	0.66	0.38	—	4.5	0.006	0.93	1.0	0.05	18.29	0.01	1.254	59.68	0.04	11.4	88.5	0.1	-2.68	2.11	0.85	0.78	—	147973	6046	58	4716	3	9	0	logfile
✔	3JCD	6549	2023-08-31	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	5JU8	8176	2023-08-27	2016-05-10	3.6	3.15	—	3.2	0.015	1.74	0.0	0.07	12.18	0.01	1.433	6.13	0.00	7.3	90.0	2.7	-1.92	0.64	0.62	0.69	3.1	0.004	0.75	0.0	0.04	15.79	0.01	1.938	15.92	0.74	8.8	90.5	0.7	-2.09	1.83	0.69	0.74	1.19	145158	5624	57	4712	1	0	0	logfile
✔	6ENJ	3899	2023-08-30	2017-10-05	3.7	3.76	—	3.7	0.003	0.61	0.0	0.03	14.08	0.01	1.234	4.06	0.06	8.4	91.3	0.3	-4.96	0.77	0.77	1.43	3.7	0.007	0.84	0.0	0.04	16.60	0.01	2.028	18.23	1.34	12.8	86.9	0.3	-3.13	1.77	0.80	0.81	1.43	147111	5950	56	4693	0	0	0	logfile
✔	5NP6	3618	2023-08-30	2017-04-13	3.6	4.23	3.52	3.6	0.004	0.66	0.0	0.06	15.49	0.02	0.612	13.59	0.00	14.9	84.5	0.6	-4.69	0.90	0.87	2.11	3.6	0.004	0.74	0.0	0.04	16.14	0.01	1.947	16.57	0.72	9.0	90.5	0.5	-1.53	1.66	0.92	0.90	1.66	146883	5995	57	4667	0	0	0	logfile
✘	6oFX	20048	2023-08-27	2019-04-01	3.3	4.60	—	2.8	0.008	1.07	0.0	0.09	14.39	0.01	2.098	16.59	0.43	9.3	90.1	0.6	-4.73	0.91	0.82	1.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144986	5753	55	4659	0	0	0	logfile
✔	6WD1	21620	2023-08-30	2020-03-31	3.3	3.61	3.63	3.4	0.006	0.94	0.0	0.08	13.39	0.01	2.219	11.79	0.55	10.6	87.9	1.5	-5.05	0.82	0.83	1.64	3.4	0.005	0.68	0.0	0.04	15.58	0.00	2.015	18.97	0.77	9.9	89.9	0.1	-2.20	0.68	0.83	0.85	1.26	146942	6023	56	4657	0	0	0	logfile
✔	6oG7	20052	2023-08-31	2019-04-01	3.3	4.37	—	3.1	0.006	0.90	0.0	0.08	13.50	0.01	2.140	16.95	0.74	11.4	87.1	1.4	-4.43	0.91	0.84	0.96	3.1	0.005	0.69	0.0	0.04	16.09	0.00	1.948	24.36	0.72	10.7	89.2	0.1	-2.13	1.53	0.92	0.89	0.82	147794	6113	55	4657	0	0	0	logfile
✔	7QGU	13959	2023-08-20	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.09	0.0	0.05	20.48	0.01	1.102	77.49	0.00	10.9	88.3	0.8	-1.78	2.90	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	6oGF	20056	2023-08-31	2019-04-02	3.9	4.57	—	3.4	0.006	0.92	0.0	0.08	13.45	0.01	2.252	16.06	0.70	12.4	86.0	1.5	-4.77	0.91	0.85	0.79	3.4	0.006	0.73	0.0	0.04	16.51	0.00	1.931	29.51	0.74	11.4	88.4	0.1	-2.51	2.05	0.91	0.87	0.71	147733	6113	55	4655	0	0	0	logfile
✘	7JSZ	22464	2023-08-31	2020-08-16	3.7	4.30	3.93	4.0	0.005	0.96	2.0	0.08	13.65	0.01	2.227	11.91	0.88	11.0	87.0	2.0	-5.09	0.86	0.85	1.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147860	6144	57	4655	0	0	0	logfile

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