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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7ST6 | 25420 | 2023-08-31 | 2021-11-12 | 3.0 | 3.74 | 3.18 | 3.0 | 0.008 | 0.96 | 1.0 | 0.08 | 15.23 | 0.01 | 1.404 | 9.99 | 0.71 | 10.6 | 89.0 | 0.4 | -4.95 | 0.90 | 0.84 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147982 | 5721 | 58 | 4811 | 0 | 0 | 0 | logfile |
✔ | 5JTE | 8175 | 2023-08-29 | 2016-05-09 | 3.6 | 3.13 | — | 3.2 | 0.015 | 1.75 | 0.0 | 0.07 | 12.22 | 0.01 | 1.432 | 6.25 | 0.00 | 7.4 | 90.0 | 2.7 | -1.94 | 0.53 | 0.56 | 0.78 | 3.1 | 0.006 | 0.90 | 0.0 | 0.05 | 16.17 | 0.01 | 2.025 | 16.45 | 1.18 | 10.2 | 89.1 | 0.8 | -2.75 | 1.48 | 0.58 | 0.68 | 1.21 | 146760 | 5625 | 59 | 4786 | 1 | 0 | 0 | logfile |
✘ | 5LZE | 4125 | 2023-08-31 | 2016-09-29 | 3.5 | 3.59 | 3.51 | 3.5 | 0.012 | 1.24 | 14.0 | 0.08 | 14.19 | 0.02 | 2.158 | 3.96 | 0.72 | 7.7 | 90.1 | 2.2 | -3.34 | 0.76 | 0.87 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148018 | 5817 | 59 | 4782 | 2 | 0 | 0 | logfile |
✔ | 5LZF | 4126 | 2023-08-31 | 2016-09-29 | 4.6 | 4.86 | 4.79 | 4.6 | 0.008 | 1.17 | 5.0 | 0.08 | 14.20 | 0.02 | 2.141 | 4.71 | 0.02 | 7.1 | 90.8 | 2.1 | -2.74 | 0.83 | 0.85 | — | 4.6 | 0.004 | 0.77 | 0.0 | 0.04 | 16.15 | 0.01 | 1.982 | 27.08 | 0.02 | 8.8 | 90.8 | 0.5 | -2.04 | 2.48 | 0.83 | 0.85 | — | 148005 | 5824 | 58 | 4779 | 2 | 0 | 0 | logfile |
✔ | 6HTQ | 0270 | 2023-08-29 | 2018-10-04 | 4.5 | 4.18 | — | 4.1 | 0.008 | 0.89 | 0.0 | 0.04 | 17.41 | 0.01 | 2.213 | 8.09 | 0.32 | 10.3 | 89.4 | 0.3 | -4.50 | 0.83 | 0.79 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 17.81 | 0.01 | 1.973 | 21.56 | 0.06 | 11.1 | 88.8 | 0.1 | -2.67 | 0.75 | 0.83 | 0.79 | — | 146680 | 5640 | 53 | 4770 | 0 | 0 | 0 | logfile |
✔ | 5V93 | 8645 | 2023-08-25 | 2017-03-22 | 4.0 | 4.15 | — | 4.0 | 0.010 | 1.09 | 3.0 | 0.05 | 10.71 | 0.01 | 1.951 | 4.66 | 0.00 | 10.1 | 89.2 | 0.7 | -2.37 | 0.83 | 0.74 | — | 4.0 | 0.004 | 0.81 | 4.0 | 0.04 | 12.44 | 0.01 | 1.571 | 18.25 | 0.67 | 9.4 | 90.3 | 0.2 | -2.11 | 0.54 | 0.85 | 0.77 | — | 143580 | 5328 | 52 | 4752 | 0 | 0 | 0 | logfile |
✔ | 7SSW | 25415 | 2023-08-30 | 2021-11-11 | 3.8 | 3.98 | 4.43 | 3.9 | 0.008 | 1.03 | 0.0 | 0.09 | 15.74 | 0.01 | 1.525 | 13.50 | 0.87 | 14.4 | 85.2 | 0.4 | -5.23 | 0.77 | 0.73 | 0.84 | 3.9 | 0.008 | 0.97 | 0.0 | 0.05 | 18.08 | 0.01 | 1.899 | 33.29 | 1.77 | 16.9 | 82.8 | 0.2 | -3.69 | 1.33 | 0.78 | 0.74 | 0.76 | 147596 | 5885 | 56 | 4736 | 0 | 0 | 0 | logfile |
✔ | 7LV0 | 23528 | 2023-08-30 | 2021-02-23 | 3.2 | 3.59 | — | 3.2 | 0.012 | 1.25 | 0.0 | 0.10 | 15.70 | 0.02 | 1.414 | 29.31 | 3.83 | 19.0 | 79.0 | 2.0 | -4.79 | 0.81 | 0.82 | 1.87 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 16.41 | 0.01 | 2.025 | 16.84 | 0.98 | 13.7 | 86.2 | 0.1 | -2.71 | 0.50 | 0.81 | 0.83 | 1.17 | 147330 | 5851 | 60 | 4734 | 0 | 0 | 0 | logfile |
✔ | 8A3L | 15116 | 2023-08-31 | 2022-06-08 | 3.42 | 3.28 | 3.30 | 3.3 | 0.008 | 0.76 | 2.0 | 0.05 | 15.62 | 0.02 | 1.607 | 10.99 | 2.12 | 7.5 | 91.9 | 0.6 | -0.87 | 0.78 | 0.80 | 2.45 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.97 | 0.01 | 1.744 | 10.84 | 0.35 | 5.0 | 94.9 | 0.1 | -0.71 | 1.06 | 0.84 | 0.85 | 2.10 | 147640 | 5876 | 65 | 4722 | 316 | 0 | 0 | logfile |
✔ | 7QGH | 13955 | 2023-08-31 | 2021-12-08 | 4.48 | 9.26 | — | 4.8 | 0.016 | 1.62 | 58.0 | 0.11 | 15.10 | 0.01 | 0.197 | 5.44 | 1.41 | 8.8 | 90.2 | 1.0 | -4.05 | 0.66 | 0.38 | — | 4.5 | 0.006 | 0.93 | 1.0 | 0.05 | 18.29 | 0.01 | 1.254 | 59.68 | 0.04 | 11.4 | 88.5 | 0.1 | -2.68 | 2.11 | 0.85 | 0.78 | — | 147973 | 6046 | 58 | 4716 | 3 | 9 | 0 | logfile |
✔ | 3JCD | 6549 | 2023-08-31 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.005 | 1.16 | 0.0 | 0.06 | 20.49 | 0.01 | 1.400 | 48.65 | 0.88 | 15.2 | 83.4 | 1.3 | -4.28 | 2.51 | 0.71 | 0.42 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 5JU8 | 8176 | 2023-08-27 | 2016-05-10 | 3.6 | 3.15 | — | 3.2 | 0.015 | 1.74 | 0.0 | 0.07 | 12.18 | 0.01 | 1.433 | 6.13 | 0.00 | 7.3 | 90.0 | 2.7 | -1.92 | 0.64 | 0.62 | 0.69 | 3.1 | 0.004 | 0.75 | 0.0 | 0.04 | 15.79 | 0.01 | 1.938 | 15.92 | 0.74 | 8.8 | 90.5 | 0.7 | -2.09 | 1.83 | 0.69 | 0.74 | 1.19 | 145158 | 5624 | 57 | 4712 | 1 | 0 | 0 | logfile |
✔ | 6ENJ | 3899 | 2023-08-30 | 2017-10-05 | 3.7 | 3.76 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.03 | 14.08 | 0.01 | 1.234 | 4.06 | 0.06 | 8.4 | 91.3 | 0.3 | -4.96 | 0.77 | 0.77 | 1.43 | 3.7 | 0.007 | 0.84 | 0.0 | 0.04 | 16.60 | 0.01 | 2.028 | 18.23 | 1.34 | 12.8 | 86.9 | 0.3 | -3.13 | 1.77 | 0.80 | 0.81 | 1.43 | 147111 | 5950 | 56 | 4693 | 0 | 0 | 0 | logfile |
✔ | 5NP6 | 3618 | 2023-08-30 | 2017-04-13 | 3.6 | 4.23 | 3.52 | 3.6 | 0.004 | 0.66 | 0.0 | 0.06 | 15.49 | 0.02 | 0.612 | 13.59 | 0.00 | 14.9 | 84.5 | 0.6 | -4.69 | 0.90 | 0.87 | 2.11 | 3.6 | 0.004 | 0.74 | 0.0 | 0.04 | 16.14 | 0.01 | 1.947 | 16.57 | 0.72 | 9.0 | 90.5 | 0.5 | -1.53 | 1.66 | 0.92 | 0.90 | 1.66 | 146883 | 5995 | 57 | 4667 | 0 | 0 | 0 | logfile |
✘ | 6oFX | 20048 | 2023-08-27 | 2019-04-01 | 3.3 | 4.60 | — | 2.8 | 0.008 | 1.07 | 0.0 | 0.09 | 14.39 | 0.01 | 2.098 | 16.59 | 0.43 | 9.3 | 90.1 | 0.6 | -4.73 | 0.91 | 0.82 | 1.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144986 | 5753 | 55 | 4659 | 0 | 0 | 0 | logfile |
✔ | 6WD1 | 21620 | 2023-08-30 | 2020-03-31 | 3.3 | 3.61 | 3.63 | 3.4 | 0.006 | 0.94 | 0.0 | 0.08 | 13.39 | 0.01 | 2.219 | 11.79 | 0.55 | 10.6 | 87.9 | 1.5 | -5.05 | 0.82 | 0.83 | 1.64 | 3.4 | 0.005 | 0.68 | 0.0 | 0.04 | 15.58 | 0.00 | 2.015 | 18.97 | 0.77 | 9.9 | 89.9 | 0.1 | -2.20 | 0.68 | 0.83 | 0.85 | 1.26 | 146942 | 6023 | 56 | 4657 | 0 | 0 | 0 | logfile |
✔ | 6oG7 | 20052 | 2023-08-31 | 2019-04-01 | 3.3 | 4.37 | — | 3.1 | 0.006 | 0.90 | 0.0 | 0.08 | 13.50 | 0.01 | 2.140 | 16.95 | 0.74 | 11.4 | 87.1 | 1.4 | -4.43 | 0.91 | 0.84 | 0.96 | 3.1 | 0.005 | 0.69 | 0.0 | 0.04 | 16.09 | 0.00 | 1.948 | 24.36 | 0.72 | 10.7 | 89.2 | 0.1 | -2.13 | 1.53 | 0.92 | 0.89 | 0.82 | 147794 | 6113 | 55 | 4657 | 0 | 0 | 0 | logfile |
✔ | 7QGU | 13959 | 2023-08-20 | 2021-12-10 | 4.75 | 7.20 | — | 5.6 | 0.010 | 1.50 | 1.0 | 0.04 | 15.78 | 0.02 | 1.064 | 11.45 | 0.26 | 6.6 | 91.0 | 2.3 | -1.82 | 0.70 | 0.57 | — | 5.5 | 0.009 | 1.09 | 0.0 | 0.05 | 20.48 | 0.01 | 1.102 | 77.49 | 0.00 | 10.9 | 88.3 | 0.8 | -1.78 | 2.90 | 0.82 | 0.84 | — | 135606 | 5791 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 6oGF | 20056 | 2023-08-31 | 2019-04-02 | 3.9 | 4.57 | — | 3.4 | 0.006 | 0.92 | 0.0 | 0.08 | 13.45 | 0.01 | 2.252 | 16.06 | 0.70 | 12.4 | 86.0 | 1.5 | -4.77 | 0.91 | 0.85 | 0.79 | 3.4 | 0.006 | 0.73 | 0.0 | 0.04 | 16.51 | 0.00 | 1.931 | 29.51 | 0.74 | 11.4 | 88.4 | 0.1 | -2.51 | 2.05 | 0.91 | 0.87 | 0.71 | 147733 | 6113 | 55 | 4655 | 0 | 0 | 0 | logfile |
✘ | 7JSZ | 22464 | 2023-08-31 | 2020-08-16 | 3.7 | 4.30 | 3.93 | 4.0 | 0.005 | 0.96 | 2.0 | 0.08 | 13.65 | 0.01 | 2.227 | 11.91 | 0.88 | 11.0 | 87.0 | 2.0 | -5.09 | 0.86 | 0.85 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147860 | 6144 | 57 | 4655 | 0 | 0 | 0 | logfile |