Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6o7K	0643	2023-02-22	2019-03-08	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.76	—	—	—	4.1	0.009	0.80	0.0	0.04	15.73	0.01	2.058	27.11	0.04	9.4	90.2	0.4	-1.85	—	0.90	0.84	—	57748	2934	25	1622	0	0	0	logfile
✔	5XXU	6780	2023-02-27	2017-07-05	3.35	3.41	—	3.4	0.009	1.11	2.0	0.09	17.75	0.00	1.315	13.35	3.58	7.0	90.4	2.6	-3.13	0.68	0.74	2.19	3.4	0.006	0.80	0.0	0.04	17.69	0.01	1.993	12.26	1.00	8.1	91.0	0.9	-1.59	1.55	0.82	0.86	1.87	68955	4381	34	1619	0	0	0	logfile
✔	6CB1	7445	2023-02-27	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.79	0.0	0.04	18.17	0.00	2.026	21.56	0.00	8.9	91.1	0.0	-1.66	2.04	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	5LMV	4083	2023-02-22	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.004	0.78	0.0	0.04	17.42	0.01	1.879	35.96	0.04	8.0	91.5	0.5	-1.87	2.22	0.78	0.77	—	59470	3124	30	1612	4	0	0	logfile
✔	5LMT	4079	2023-02-22	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.76	0.02	1.290	18.78	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.004	0.76	0.0	0.04	16.49	0.01	1.832	27.25	0.09	8.9	90.8	0.3	-1.60	0.91	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	5LMU	4080	2023-02-22	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.34	0.02	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	4.0	0.005	0.80	0.0	0.04	17.69	0.01	1.812	26.28	0.84	7.7	91.8	0.5	-1.57	0.88	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMQ	4076	2023-02-22	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.84	0.02	1.387	19.43	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.004	0.77	0.0	0.04	16.79	0.01	1.832	30.18	0.05	8.7	90.9	0.5	-1.28	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	5LMR	4077	2023-02-22	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.52	0.02	1.426	17.92	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.008	0.83	0.0	0.04	16.97	0.01	1.974	37.25	0.05	9.4	90.1	0.5	-2.00	1.61	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	7ZAG	14579	2023-02-24	2022-03-22	2.77	3.44	2.77	3.0	0.017	0.71	1.0	0.04	13.06	0.06	1.409	4.02	0.74	3.3	96.7	0.0	0.45	0.93	0.91	4.29	3.0	0.005	1.12	0.0	0.04	15.37	0.01	1.821	6.69	0.65	3.7	96.3	0.0	0.58	0.95	0.93	0.94	3.70	65678	3824	57	1596	68	379	0	logfile
✔	7ZAi	14581	2023-02-24	2022-03-22	2.6	3.30	2.61	2.9	0.016	0.74	0.0	0.04	13.28	0.06	1.408	3.42	0.64	2.9	97.1	0.0	0.54	0.93	0.94	4.39	2.9	0.004	1.17	0.0	0.04	15.38	0.01	1.832	5.68	1.08	3.2	96.8	0.0	0.61	0.40	0.93	0.95	4.09	64649	3694	54	1596	68	379	0	logfile
✔	7ZAH	14580	2023-02-27	2022-03-22	2.7	3.02	2.71	2.8	0.017	0.83	0.0	0.05	14.11	0.06	1.407	3.78	1.24	3.4	96.6	0.0	-0.04	0.88	0.92	4.04	2.8	0.007	1.17	0.0	0.05	16.02	0.01	1.717	4.87	1.43	3.0	97.0	0.0	0.22	0.41	0.88	0.93	3.71	69366	4289	58	1596	70	379	0	logfile
✘	6SWC	10322	2023-02-27	2019-09-20	3.3	4.36	3.31	3.3	0.015	0.97	0.0	0.05	16.16	0.04	1.823	9.66	0.13	13.4	86.6	0.0	-5.19	0.83	0.72	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70744	4519	48	1593	41	42	0	logfile
✘	6SW9	10320	2023-02-27	2019-09-20	4.2	5.88	4.46	3.0	0.016	1.26	0.0	0.06	18.23	0.04	1.769	31.75	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✔	4V19	2787	2023-02-27	2014-09-25	3.4	3.44	—	3.4	0.009	1.32	0.0	0.05	20.28	0.05	1.860	9.75	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.003	1.00	0.0	0.04	19.43	0.01	1.122	8.45	0.58	3.5	96.5	0.1	0.02	1.52	0.76	0.87	2.12	69409	4361	42	1583	171	204	0	logfile
✔	5ZEU	6923	2023-02-21	2018-02-28	3.7	3.76	—	3.7	0.007	1.11	0.0	0.05	16.39	0.01	1.086	17.26	1.40	8.6	90.3	1.1	-4.22	0.59	0.75	1.73	3.7	0.006	0.81	0.0	0.04	16.40	0.01	1.993	15.78	1.05	10.6	89.1	0.3	-1.34	1.35	0.62	0.80	1.57	52954	2406	22	1583	0	0	0	logfile
✔	7NAR	12245	2023-02-21	2021-01-25	3.0	3.86	3.05	2.7	0.008	0.77	9.0	0.05	14.49	0.03	1.404	14.86	0.00	3.3	96.7	0.0	-1.48	0.90	0.84	1.34	2.8	0.005	0.78	0.0	0.04	15.52	0.01	1.877	20.25	4.39	4.2	95.8	0.0	-0.59	1.28	0.92	0.90	1.22	54452	2718	25	1534	100	0	0	logfile
✔	5LMN	4073	2023-02-21	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.85	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.004	0.72	0.0	0.04	17.13	0.00	1.859	19.78	0.87	7.4	92.2	0.3	-1.09	1.56	0.77	0.84	1.29	54149	2623	27	1534	129	0	0	logfile
✔	5LMo	4074	2023-02-21	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.78	0.01	0.968	35.61	0.00	9.3	90.2	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	7ZHG	14731	2023-02-24	2022-04-06	2.25	2.12	2.20	2.2	0.016	0.85	3.0	0.04	13.95	0.06	1.889	2.83	1.41	3.3	96.7	0.0	0.18	0.70	0.86	5.31	2.2	0.004	1.22	0.0	0.04	16.05	0.01	1.874	3.96	0.88	2.9	97.1	0.0	0.54	0.38	0.72	0.88	4.97	64278	3601	69	1533	96	2083	0	logfile
✔	7M4U	23666	2023-02-21	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile

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