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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2023-02-22 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.009 | 0.80 | 0.0 | 0.04 | 15.73 | 0.01 | 2.058 | 27.11 | 0.04 | 9.4 | 90.2 | 0.4 | -1.85 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✔ | 5XXU | 6780 | 2023-02-27 | 2017-07-05 | 3.35 | 3.41 | — | 3.4 | 0.009 | 1.11 | 2.0 | 0.09 | 17.75 | 0.00 | 1.315 | 13.35 | 3.58 | 7.0 | 90.4 | 2.6 | -3.13 | 0.68 | 0.74 | 2.19 | 3.4 | 0.006 | 0.80 | 0.0 | 0.04 | 17.69 | 0.01 | 1.993 | 12.26 | 1.00 | 8.1 | 91.0 | 0.9 | -1.59 | 1.55 | 0.82 | 0.86 | 1.87 | 68955 | 4381 | 34 | 1619 | 0 | 0 | 0 | logfile |
✔ | 6CB1 | 7445 | 2023-02-27 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 16.94 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.79 | 0.0 | 0.04 | 18.17 | 0.00 | 2.026 | 21.56 | 0.00 | 8.9 | 91.1 | 0.0 | -1.66 | 2.04 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 5LMV | 4083 | 2023-02-22 | 2016-08-01 | 4.9 | 6.86 | 6.64 | 6.7 | 0.008 | 1.34 | 34.0 | 0.11 | 20.14 | 0.01 | 0.977 | 14.22 | 15.18 | 9.6 | 87.9 | 2.5 | -1.98 | 0.70 | 0.58 | — | 6.7 | 0.004 | 0.78 | 0.0 | 0.04 | 17.42 | 0.01 | 1.879 | 35.96 | 0.04 | 8.0 | 91.5 | 0.5 | -1.87 | 2.22 | 0.78 | 0.77 | — | 59470 | 3124 | 30 | 1612 | 4 | 0 | 0 | logfile |
✔ | 5LMT | 4079 | 2023-02-22 | 2016-08-01 | 4.15 | 4.33 | 4.20 | 4.2 | 0.008 | 1.43 | 21.0 | 0.12 | 20.76 | 0.02 | 1.290 | 18.78 | 22.35 | 11.9 | 84.8 | 3.3 | -2.73 | 0.77 | 0.76 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.04 | 16.49 | 0.01 | 1.832 | 27.25 | 0.09 | 8.9 | 90.8 | 0.3 | -1.60 | 0.91 | 0.80 | 0.83 | — | 55776 | 2622 | 31 | 1612 | 88 | 0 | 0 | logfile |
✔ | 5LMU | 4080 | 2023-02-22 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 21.34 | 0.02 | 1.289 | 21.15 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | 4.0 | 0.005 | 0.80 | 0.0 | 0.04 | 17.69 | 0.01 | 1.812 | 26.28 | 0.84 | 7.7 | 91.8 | 0.5 | -1.57 | 0.88 | 0.75 | 0.83 | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✔ | 5LMQ | 4076 | 2023-02-22 | 2016-08-01 | 4.2 | 4.46 | 4.25 | 4.2 | 0.009 | 1.44 | 30.0 | 0.12 | 20.84 | 0.02 | 1.387 | 19.43 | 21.46 | 10.5 | 86.1 | 3.4 | -2.56 | 0.80 | 0.76 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.79 | 0.01 | 1.832 | 30.18 | 0.05 | 8.7 | 90.9 | 0.5 | -1.28 | 1.62 | 0.84 | 0.85 | — | 55841 | 2635 | 29 | 1612 | 66 | 0 | 0 | logfile |
✔ | 5LMR | 4077 | 2023-02-22 | 2016-08-01 | 4.45 | 4.71 | 4.60 | 4.4 | 0.008 | 1.39 | 20.0 | 0.12 | 20.52 | 0.02 | 1.426 | 17.92 | 16.73 | 8.7 | 88.5 | 2.8 | -2.16 | 0.79 | 0.74 | — | 4.4 | 0.008 | 0.83 | 0.0 | 0.04 | 16.97 | 0.01 | 1.974 | 37.25 | 0.05 | 9.4 | 90.1 | 0.5 | -2.00 | 1.61 | 0.84 | 0.85 | — | 55662 | 2628 | 29 | 1609 | 4 | 0 | 0 | logfile |
✔ | 7ZAG | 14579 | 2023-02-24 | 2022-03-22 | 2.77 | 3.44 | 2.77 | 3.0 | 0.017 | 0.71 | 1.0 | 0.04 | 13.06 | 0.06 | 1.409 | 4.02 | 0.74 | 3.3 | 96.7 | 0.0 | 0.45 | 0.93 | 0.91 | 4.29 | 3.0 | 0.005 | 1.12 | 0.0 | 0.04 | 15.37 | 0.01 | 1.821 | 6.69 | 0.65 | 3.7 | 96.3 | 0.0 | 0.58 | 0.95 | 0.93 | 0.94 | 3.70 | 65678 | 3824 | 57 | 1596 | 68 | 379 | 0 | logfile |
✔ | 7ZAi | 14581 | 2023-02-24 | 2022-03-22 | 2.6 | 3.30 | 2.61 | 2.9 | 0.016 | 0.74 | 0.0 | 0.04 | 13.28 | 0.06 | 1.408 | 3.42 | 0.64 | 2.9 | 97.1 | 0.0 | 0.54 | 0.93 | 0.94 | 4.39 | 2.9 | 0.004 | 1.17 | 0.0 | 0.04 | 15.38 | 0.01 | 1.832 | 5.68 | 1.08 | 3.2 | 96.8 | 0.0 | 0.61 | 0.40 | 0.93 | 0.95 | 4.09 | 64649 | 3694 | 54 | 1596 | 68 | 379 | 0 | logfile |
✔ | 7ZAH | 14580 | 2023-02-27 | 2022-03-22 | 2.7 | 3.02 | 2.71 | 2.8 | 0.017 | 0.83 | 0.0 | 0.05 | 14.11 | 0.06 | 1.407 | 3.78 | 1.24 | 3.4 | 96.6 | 0.0 | -0.04 | 0.88 | 0.92 | 4.04 | 2.8 | 0.007 | 1.17 | 0.0 | 0.05 | 16.02 | 0.01 | 1.717 | 4.87 | 1.43 | 3.0 | 97.0 | 0.0 | 0.22 | 0.41 | 0.88 | 0.93 | 3.71 | 69366 | 4289 | 58 | 1596 | 70 | 379 | 0 | logfile |
✘ | 6SWC | 10322 | 2023-02-27 | 2019-09-20 | 3.3 | 4.36 | 3.31 | 3.3 | 0.015 | 0.97 | 0.0 | 0.05 | 16.16 | 0.04 | 1.823 | 9.66 | 0.13 | 13.4 | 86.6 | 0.0 | -5.19 | 0.83 | 0.72 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70744 | 4519 | 48 | 1593 | 41 | 42 | 0 | logfile |
✘ | 6SW9 | 10320 | 2023-02-27 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 18.23 | 0.04 | 1.769 | 31.75 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✔ | 4V19 | 2787 | 2023-02-27 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.32 | 0.0 | 0.05 | 20.28 | 0.05 | 1.860 | 9.75 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.003 | 1.00 | 0.0 | 0.04 | 19.43 | 0.01 | 1.122 | 8.45 | 0.58 | 3.5 | 96.5 | 0.1 | 0.02 | 1.52 | 0.76 | 0.87 | 2.12 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 5ZEU | 6923 | 2023-02-21 | 2018-02-28 | 3.7 | 3.76 | — | 3.7 | 0.007 | 1.11 | 0.0 | 0.05 | 16.39 | 0.01 | 1.086 | 17.26 | 1.40 | 8.6 | 90.3 | 1.1 | -4.22 | 0.59 | 0.75 | 1.73 | 3.7 | 0.006 | 0.81 | 0.0 | 0.04 | 16.40 | 0.01 | 1.993 | 15.78 | 1.05 | 10.6 | 89.1 | 0.3 | -1.34 | 1.35 | 0.62 | 0.80 | 1.57 | 52954 | 2406 | 22 | 1583 | 0 | 0 | 0 | logfile |
✔ | 7NAR | 12245 | 2023-02-21 | 2021-01-25 | 3.0 | 3.86 | 3.05 | 2.7 | 0.008 | 0.77 | 9.0 | 0.05 | 14.49 | 0.03 | 1.404 | 14.86 | 0.00 | 3.3 | 96.7 | 0.0 | -1.48 | 0.90 | 0.84 | 1.34 | 2.8 | 0.005 | 0.78 | 0.0 | 0.04 | 15.52 | 0.01 | 1.877 | 20.25 | 4.39 | 4.2 | 95.8 | 0.0 | -0.59 | 1.28 | 0.92 | 0.90 | 1.22 | 54452 | 2718 | 25 | 1534 | 100 | 0 | 0 | logfile |
✔ | 5LMN | 4073 | 2023-02-21 | 2016-08-01 | 3.55 | 3.68 | 3.61 | 3.6 | 0.007 | 1.42 | 35.0 | 0.12 | 20.67 | 0.01 | 0.925 | 19.85 | 21.59 | 10.4 | 86.7 | 2.8 | -2.30 | 0.79 | 0.88 | 1.35 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 17.13 | 0.00 | 1.859 | 19.78 | 0.87 | 7.4 | 92.2 | 0.3 | -1.09 | 1.56 | 0.77 | 0.84 | 1.29 | 54149 | 2623 | 27 | 1534 | 129 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2023-02-21 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 16.78 | 0.01 | 0.968 | 35.61 | 0.00 | 9.3 | 90.2 | 0.5 | -1.75 | 2.17 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 7ZHG | 14731 | 2023-02-24 | 2022-04-06 | 2.25 | 2.12 | 2.20 | 2.2 | 0.016 | 0.85 | 3.0 | 0.04 | 13.95 | 0.06 | 1.889 | 2.83 | 1.41 | 3.3 | 96.7 | 0.0 | 0.18 | 0.70 | 0.86 | 5.31 | 2.2 | 0.004 | 1.22 | 0.0 | 0.04 | 16.05 | 0.01 | 1.874 | 3.96 | 0.88 | 2.9 | 97.1 | 0.0 | 0.54 | 0.38 | 0.72 | 0.88 | 4.97 | 64278 | 3601 | 69 | 1533 | 96 | 2083 | 0 | logfile |
✔ | 7M4U | 23666 | 2023-02-21 | 2021-03-22 | 2.71 | 1.78 | — | 1.6 | 0.006 | 0.58 | 2.0 | 0.04 | 14.94 | 0.02 | 1.771 | 4.42 | 0.20 | 3.1 | 96.7 | 0.2 | 1.08 | 0.79 | 0.76 | 3.70 | 1.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.09 | 0.01 | 1.732 | 5.99 | 2.36 | 3.6 | 96.2 | 0.2 | 0.59 | 1.72 | 0.82 | 0.81 | 3.40 | 51764 | 2386 | 27 | 1528 | 84 | 191 | 0 | logfile |