Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7JMJ	22396	2023-04-24	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.90	0.62	11.3	88.5	0.3	-4.67	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	5T15	8342	2023-04-24	2016-08-17	3.6	3.80	3.88	3.7	0.007	1.01	0.0	0.05	10.37	0.01	1.373	4.08	0.45	11.5	88.2	0.3	-5.71	0.73	0.78	2.03	3.7	0.003	0.73	0.0	0.04	13.98	0.00	2.102	8.84	0.26	10.0	89.8	0.2	-1.55	1.47	0.74	0.79	1.03	120796	13508	12	0	3608	0	0	logfile
✔	7K0T	22616	2023-04-22	2020-09-05	4.3	4.52	4.29	4.2	0.003	0.65	1.0	0.04	13.80	0.00	1.909	7.65	0.63	7.5	92.4	0.2	-0.19	0.84	0.76	—	4.2	0.036	2.69	59.0	0.11	15.80	0.02	1.195	109.81	0.00	43.4	55.0	1.6	-7.43	1.92	0.86	0.83	—	115905	12820	8	0	3608	0	0	logfile
✘	7JMG	22393	2023-04-24	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.38	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	7JMi	22395	2023-04-24	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.47	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	4.2	0.003	0.89	0.0	0.05	11.88	0.01	2.082	18.52	0.00	11.8	88.0	0.2	-3.52	0.83	0.81	0.69	—	120756	13500	12	0	3608	0	0	logfile
✘	6PV6	20486	2023-04-24	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.47	0.31	11.0	88.9	0.1	-4.72	0.60	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	7K0S	22615	2023-04-22	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.91	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.18	225.0	0.13	17.01	0.02	1.355	135.88	0.00	44.3	52.4	3.3	-7.51	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✔	6X64	22069	2023-04-23	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7VMS	32037	2023-04-25	2021-10-09	3.8	3.43	—	3.3	0.003	0.64	0.0	0.04	13.33	0.00	2.073	13.12	0.20	6.2	93.8	0.0	-2.49	0.62	0.69	0.68	3.3	0.003	0.65	0.0	0.04	15.61	0.00	2.103	12.73	0.26	7.2	92.8	0.0	-1.01	1.47	0.62	0.70	0.74	123552	13608	12	0	3004	0	0	logfile
✔	7VMR	32036	2023-04-25	2021-10-09	3.3	2.92	—	3.1	0.003	0.66	8.0	0.04	14.56	0.00	2.099	10.88	1.87	6.4	93.6	0.0	-0.66	0.63	0.70	1.34	3.0	0.003	0.63	0.0	0.04	16.02	0.00	2.116	11.90	0.34	7.0	93.0	0.0	-0.69	0.53	0.65	0.75	1.54	123548	13608	12	0	3000	0	0	logfile
✔	6o1o	0454	2023-04-23	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.77	0.0	0.07	13.79	0.00	1.993	31.58	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✘	3J8H	2807	2023-04-21	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.49	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111160	12796	12	0	2276	0	0	logfile
✔	6M2W	30067	2023-04-23	2020-03-01	3.8	2.59	3.89	2.6	0.006	1.08	0.0	0.05	15.58	0.01	2.276	3.96	3.59	3.1	96.9	0.0	-5.38	0.77	0.64	0.21	2.1	0.003	0.63	0.0	0.04	15.54	0.00	2.105	8.78	0.22	2.8	97.2	0.0	0.30	1.82	0.83	0.79	1.96	120452	14972	16	0	1828	0	0	logfile
✔	7CF9	30343	2023-04-22	2020-06-24	4.7	4.24	5.21	4.0	0.006	1.24	0.0	0.06	16.01	0.01	1.538	5.47	1.67	6.2	93.7	0.1	-4.86	0.79	0.68	—	4.0	0.003	0.76	0.0	0.04	13.67	0.00	2.032	14.49	0.00	5.5	94.5	0.0	-2.02	1.79	0.81	0.74	—	116104	14416	12	0	1820	0	0	logfile
✔	6LHV	0900	2023-04-23	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6LHW	0901	2023-04-22	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6X33	22016	2023-04-22	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	6X35	22018	2023-04-21	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6X32	22015	2023-04-22	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	6oDY	20024	2023-04-28	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.12	0.02	1.721	102.91	3.91	37.7	61.0	1.3	-7.26	1.53	0.69	0.69	1.79	28116	2832	6	0	1326	0	0	logfile

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