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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K0S | 22615 | 2024-03-12 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 14.04 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.17 | 236.0 | 0.13 | 17.13 | 0.02 | 1.379 | 136.31 | 0.01 | 44.3 | 52.3 | 3.4 | -7.53 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7UMZ | 26610 | 2024-03-11 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.67 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.96 | 149.0 | 0.19 | 20.93 | 0.02 | 0.739 | 52.46 | 23.20 | 26.6 | 70.8 | 2.6 | -6.91 | 1.64 | 0.75 | 0.86 | 2.22 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |
✔ | 6X64 | 22069 | 2024-03-16 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 7VMS | 32037 | 2024-03-14 | 2021-10-09 | 3.8 | 3.43 | — | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 13.33 | 0.00 | 2.073 | 13.12 | 0.20 | 6.2 | 93.8 | 0.0 | -2.49 | 0.62 | 0.69 | 0.68 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.83 | 0.00 | 2.098 | 12.82 | 2.93 | 7.9 | 92.1 | 0.0 | -0.93 | 1.46 | 0.62 | 0.70 | 0.69 | 123552 | 13608 | 12 | 0 | 3004 | 0 | 0 | logfile |
✔ | 7VML | 33935 | 2024-03-14 | 2021-10-09 | 3.3 | 3.44 | 3.36 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 13.79 | 0.00 | 2.158 | 8.25 | 1.39 | 6.1 | 93.9 | 0.0 | -2.64 | 0.70 | 0.77 | 1.66 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.84 | 0.00 | 2.160 | 11.12 | 3.06 | 6.9 | 93.1 | 0.0 | -0.94 | 1.90 | 0.71 | 0.79 | 1.73 | 123564 | 13608 | 12 | 0 | 3000 | 0 | 0 | logfile |
✔ | 7VMR | 32036 | 2024-03-14 | 2021-10-09 | 3.3 | 2.92 | — | 3.1 | 0.003 | 0.66 | 8.0 | 0.04 | 14.56 | 0.00 | 2.099 | 10.88 | 1.87 | 6.4 | 93.6 | 0.0 | -0.66 | 0.63 | 0.70 | 1.34 | 2.9 | 0.005 | 0.77 | 1.0 | 0.04 | 16.13 | 0.01 | 2.042 | 14.41 | 2.88 | 8.8 | 91.2 | 0.0 | -1.06 | 0.52 | 0.65 | 0.76 | 1.64 | 123548 | 13608 | 12 | 0 | 3000 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2024-03-16 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 18.29 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.012 | 1.72 | 0.0 | 0.07 | 17.09 | 0.00 | 1.997 | 30.54 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 5ADX | 2856 | 2024-03-25 | 2015-08-24 | 4.0 | 4.18 | — | 4.0 | 0.008 | 1.05 | 1.0 | 0.06 | 12.82 | 0.00 | 1.155 | 3.43 | 1.97 | 6.3 | 93.5 | 0.3 | -2.81 | 0.77 | 0.63 | — | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 14.94 | 0.00 | 2.114 | 11.50 | 2.58 | 5.1 | 94.9 | 0.0 | -0.62 | 0.91 | 0.86 | 0.79 | — | 49392 | 4737 | 27 | 0 | 2569 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2024-03-11 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✔ | 6F1T | 4168 | 2024-03-19 | 2017-11-23 | 3.5 | 3.80 | — | 3.5 | 0.011 | 1.43 | 0.0 | 0.07 | 10.01 | 0.01 | 1.456 | 9.09 | 0.44 | 10.8 | 89.1 | 0.2 | -4.05 | 0.76 | 0.63 | 1.82 | 3.5 | 0.003 | 0.69 | 1.0 | 0.04 | 14.07 | 0.00 | 2.116 | 12.27 | 1.78 | 6.6 | 93.4 | 0.0 | -1.13 | 0.94 | 0.79 | 0.73 | 1.50 | 92795 | 11785 | 55 | 0 | 2212 | 0 | 0 | logfile |
✔ | 5LC5 | 4032 | 2024-03-25 | 2016-06-19 | 4.35 | 4.47 | 4.28 | 4.3 | 0.009 | 1.47 | 18.0 | 1.11 | 14.69 | 0.01 | 1.587 | 6.08 | 3.67 | 8.6 | 87.7 | 3.7 | -4.81 | 0.69 | 0.71 | — | 4.3 | 0.009 | 1.83 | 0.0 | 0.33 | 13.11 | 0.00 | 2.114 | 14.34 | 0.03 | 9.4 | 89.7 | 0.9 | -1.47 | 1.67 | 0.70 | 0.76 | — | 51718 | 5916 | 52 | 0 | 1988 | 0 | 0 | logfile |
✔ | 5LDW | 4040 | 2024-03-25 | 2016-06-28 | 4.27 | 4.38 | 4.19 | 4.3 | 0.009 | 1.42 | 20.0 | 1.11 | 14.78 | 0.01 | 1.608 | 6.24 | 3.32 | 8.5 | 88.2 | 3.3 | -4.87 | 0.69 | 0.73 | — | 4.3 | 0.009 | 1.83 | 0.0 | 0.33 | 12.89 | 0.00 | 2.113 | 13.95 | 0.00 | 8.1 | 90.9 | 1.0 | -1.14 | 1.60 | 0.70 | 0.77 | — | 51181 | 5866 | 52 | 0 | 1936 | 0 | 0 | logfile |
✔ | 5WDT | 8813 | 2024-03-03 | 2017-07-06 | 3.0 | 3.20 | 3.19 | 3.2 | 0.008 | 1.13 | 2.0 | 0.10 | 24.24 | 0.02 | 1.527 | 4.72 | 3.29 | 9.7 | 88.1 | 2.3 | -4.08 | 0.77 | 0.80 | 2.46 | 3.1 | 0.007 | 0.82 | 3.0 | 0.04 | 23.70 | 0.01 | 1.741 | 10.82 | 5.11 | 8.6 | 90.8 | 0.5 | -1.45 | 1.26 | 0.84 | 0.85 | 2.33 | 155275 | 6324 | 125 | 4802 | 1910 | 920 | 0 | logfile |
✔ | 7CF9 | 30343 | 2024-03-12 | 2020-06-24 | 4.7 | 4.24 | 5.21 | 4.0 | 0.006 | 1.24 | 0.0 | 0.06 | 16.01 | 0.01 | 1.538 | 5.47 | 1.67 | 6.2 | 93.7 | 0.1 | -4.86 | 0.79 | 0.68 | — | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 13.80 | 0.00 | 2.087 | 12.22 | 0.00 | 4.2 | 95.8 | 0.0 | -1.69 | 1.76 | 0.81 | 0.73 | — | 116104 | 14416 | 12 | 0 | 1820 | 0 | 0 | logfile |
✔ | 7PKQ | 13477 | 2024-03-15 | 2021-08-26 | 4.2 | 4.26 | 4.62 | 4.1 | 0.009 | 1.42 | 20.0 | 0.08 | 21.64 | 0.01 | 2.123 | 9.00 | 0.89 | 6.0 | 93.8 | 0.3 | -2.71 | 0.63 | 0.61 | — | 4.1 | 0.004 | 0.78 | 0.0 | 0.04 | 21.20 | 0.01 | 2.001 | 20.85 | 0.05 | 8.0 | 91.9 | 0.1 | -1.32 | 0.85 | 0.65 | 0.66 | — | 70313 | 4968 | 44 | 1114 | 1722 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2024-03-16 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.59 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 6.64 | 0.00 | 2.051 | 53.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.58 | 0.84 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 6J40 | 9777 | 2024-03-19 | 2019-01-07 | 3.8 | 4.30 | — | 3.8 | 0.022 | 1.99 | 4.0 | 0.18 | 22.44 | 0.01 | 1.376 | 17.72 | 0.33 | 4.5 | 95.5 | 0.0 | -5.08 | 0.80 | 0.72 | 1.93 | 3.8 | 0.007 | 0.91 | 0.0 | 0.05 | 16.67 | 0.01 | 1.418 | 23.29 | 1.56 | 5.8 | 94.2 | 0.0 | -0.54 | 1.30 | 0.84 | 0.78 | 1.59 | 96390 | 8392 | 120 | 0 | 1656 | 0 | 0 | logfile |
✔ | 5WE4 | 8814 | 2024-03-02 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.14 | 3.0 | 0.10 | 24.21 | 0.02 | 1.575 | 3.75 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.005 | 0.78 | 0.0 | 0.04 | 23.77 | 0.01 | 1.021 | 11.61 | 5.67 | 8.3 | 91.2 | 0.5 | -1.85 | 3.97 | 0.84 | 0.83 | 2.36 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 6S8F | 10120 | 2024-03-22 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.79 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.90 | 46.0 | 0.11 | 19.41 | 0.02 | 1.505 | 190.57 | 33.05 | 54.0 | 43.4 | 2.6 | -8.00 | 2.40 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 7Q5A | 13830 | 2024-03-12 | 2021-11-03 | 2.46 | 2.69 | — | 2.6 | 0.012 | 1.10 | 0.0 | 0.06 | 9.54 | 0.00 | 2.247 | 3.06 | 0.00 | 0.0 | 100.0 | 0.0 | 0.99 | 0.66 | 0.84 | 6.72 | 2.6 | 0.055 | 3.97 | 261.0 | 0.21 | 16.64 | 0.02 | 1.937 | 25.81 | 5.71 | 0.0 | 100.0 | 0.0 | 0.81 | 1.64 | 0.67 | 0.86 | 6.31 | 61600 | 5600 | 800 | 0 | 1600 | 0 | 0 | logfile |