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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5GAF | 8002 | 2024-04-14 | 2015-11-25 | 4.3 | 4.42 | — | 4.3 | 0.007 | 1.09 | 1.0 | 0.05 | 23.65 | 0.01 | 1.266 | 8.87 | 11.04 | 3.5 | 96.4 | 0.1 | -3.28 | 0.63 | 0.64 | — | 4.3 | 0.004 | 0.66 | 0.0 | 0.03 | 22.68 | 0.01 | 1.057 | 18.83 | 0.03 | 4.3 | 95.5 | 0.2 | -0.84 | 2.00 | 0.71 | 0.84 | — | 96182 | 3889 | 47 | 3049 | 452 | 0 | 0 | logfile |
✘ | 7YCA | 33737 | 2024-04-07 | 2022-07-01 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64832 | 5632 | 60 | 0 | 450 | 4 | 0 | logfile |
✘ | 7LX0 | 23563 | 2024-04-10 | 2021-03-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72462 | 6699 | 60 | 0 | 447 | 0 | 0 | logfile |
✔ | 5UoW | 8579 | 2024-04-15 | 2017-02-01 | 4.5 | 8.74 | — | 7.2 | 0.011 | 1.84 | 17.0 | 0.10 | 14.83 | 0.02 | 1.072 | 54.88 | 10.98 | 4.5 | 94.5 | 1.0 | -0.55 | 0.64 | 0.54 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 11.31 | 0.00 | 2.109 | 19.37 | 0.05 | 7.0 | 92.8 | 0.2 | -0.45 | 2.58 | 0.78 | 0.81 | — | 24347 | 3186 | 15 | 0 | 446 | 0 | 0 | logfile |
✘ | 7FiX | 31605 | 2024-04-11 | 2021-08-01 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✔ | 8TVP | 41647 | 2024-04-07 | 2023-08-18 | 3.7 | 4.07 | 3.69 | 3.5 | 0.010 | 0.72 | 0.0 | 0.04 | 16.18 | 0.00 | 1.544 | 10.89 | 0.06 | 5.2 | 94.7 | 0.1 | -0.31 | 0.85 | 0.79 | 2.25 | 3.5 | 0.003 | 0.47 | 0.0 | 0.04 | 16.43 | 0.00 | 1.947 | 12.20 | 0.52 | 4.8 | 95.1 | 0.1 | 0.19 | 0.34 | 0.85 | 0.79 | 2.12 | 63938 | 3748 | 22 | 103 | 443 | 0 | 29847 | logfile |
✔ | 8TVQ | 41648 | 2024-04-06 | 2023-08-18 | 4.6 | 5.27 | 4.92 | 4.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.38 | 0.00 | 1.187 | 17.40 | 0.00 | 6.4 | 93.6 | 0.1 | -1.44 | 0.84 | 0.74 | — | 4.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.73 | 0.00 | 1.113 | 19.71 | 0.00 | 8.0 | 92.0 | 0.1 | -1.33 | 0.56 | 0.85 | 0.76 | — | 57710 | 3424 | 20 | 100 | 443 | 0 | 26856 | logfile |
✔ | 8TVS | 41650 | 2024-04-06 | 2023-08-18 | 4.4 | 4.59 | 4.48 | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 15.19 | 0.00 | 1.713 | 10.23 | 0.00 | 4.5 | 95.5 | 0.1 | -0.62 | 0.83 | 0.76 | — | 4.1 | 0.003 | 0.51 | 0.0 | 0.04 | 15.41 | 0.00 | 1.893 | 12.80 | 0.00 | 5.7 | 94.2 | 0.1 | 0.02 | 0.47 | 0.84 | 0.77 | — | 56913 | 3697 | 22 | 104 | 443 | 0 | 24971 | logfile |
✔ | 8iFB | 35411 | 2024-04-15 | 2023-02-17 | 2.43 | 2.34 | 2.39 | 2.4 | 0.007 | 0.72 | 0.0 | 0.04 | 23.38 | 0.02 | 1.755 | 8.11 | 0.90 | 3.3 | 96.6 | 0.1 | 0.44 | 0.65 | 0.87 | 4.66 | 2.4 | 0.003 | 0.64 | 0.0 | 0.04 | 22.90 | 0.01 | 1.853 | 5.99 | 3.57 | 3.1 | 96.9 | 0.0 | 0.80 | 0.81 | 0.71 | 0.90 | 4.40 | 142510 | 5585 | 68 | 4554 | 438 | 0 | 0 | logfile |
✔ | 5T62 | 8362 | 2024-04-11 | 2016-09-01 | 3.3 | 3.38 | — | 3.4 | 0.007 | 1.13 | 5.0 | 0.09 | 22.91 | 0.01 | 1.390 | 1.88 | 6.32 | 8.1 | 89.7 | 2.2 | -4.03 | 0.68 | 0.78 | 3.21 | 3.3 | 0.008 | 0.80 | 0.0 | 0.05 | 22.26 | 0.01 | 1.006 | 5.56 | 4.30 | 7.5 | 91.8 | 0.6 | -1.68 | 0.68 | 0.81 | 0.87 | 2.67 | 131766 | 7061 | 57 | 3483 | 438 | 6 | 0 | logfile |
✘ | 7DR2 | 30823 | 2024-04-13 | 2020-12-25 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89952 | 8588 | 76 | 0 | 438 | 0 | 0 | logfile |
✘ | 6oRE | 20173 | 2024-04-16 | 2019-04-30 | 2.9 | 3.38 | — | 3.0 | 0.008 | 0.76 | 2.0 | 0.04 | 22.73 | 0.02 | 1.454 | 4.55 | 0.34 | 3.4 | 96.5 | 0.1 | -3.76 | 0.91 | 0.91 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144774 | 5710 | 67 | 4642 | 438 | 0 | 0 | logfile |
✘ | 6HRM | 0261 | 2024-04-16 | 2018-09-27 | 2.96 | 3.03 | — | 3.0 | 0.010 | 1.02 | 0.0 | 0.17 | 22.75 | 0.02 | 2.029 | 3.00 | 0.49 | 5.2 | 94.8 | 0.1 | -4.48 | 0.73 | 0.83 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145179 | 5972 | 64 | 4570 | 438 | 2 | 0 | logfile |
✔ | 8GZ3 | 34389 | 2024-04-06 | 2022-09-24 | 3.3 | 3.13 | — | 3.1 | 0.012 | 1.45 | 3.0 | 0.10 | 15.00 | 0.01 | 2.142 | 5.81 | 1.74 | 1.8 | 98.2 | 0.0 | -0.20 | 0.63 | 0.77 | 2.77 | 3.1 | 0.004 | 0.64 | 0.0 | 0.04 | 14.14 | 0.00 | 2.153 | 6.07 | 1.90 | 1.8 | 98.2 | 0.0 | 0.64 | 1.18 | 0.71 | 0.83 | 3.00 | 8542 | 789 | 7 | 0 | 434 | 1 | 0 | logfile |
✔ | 6J3Y | 9775 | 2024-04-10 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.77 | 4.0 | 0.14 | 19.44 | 0.01 | 1.372 | 10.02 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.53 | 0.00 | 1.863 | 12.08 | 1.60 | 3.2 | 96.8 | 0.0 | 0.20 | 0.65 | 0.79 | 0.87 | 2.93 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |
✔ | 8UU8 | 42571 | 2024-04-15 | 2023-10-31 | 3.1 | 3.43 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 22.81 | 0.01 | 1.798 | 6.82 | 0.00 | 8.0 | 91.8 | 0.2 | -1.80 | 0.78 | 0.83 | 3.12 | 3.3 | 0.002 | 0.58 | 0.0 | 0.03 | 22.75 | 0.00 | 1.804 | 7.07 | 2.91 | 5.9 | 94.0 | 0.1 | -1.18 | 0.91 | 0.81 | 0.87 | 2.57 | 142031 | 5929 | 95 | 4614 | 428 | 364 | 0 | logfile |
✘ | 7oii | 12930 | 2024-04-16 | 2021-05-11 | 3.0 | 3.56 | 2.91 | 2.7 | 0.017 | 1.20 | 0.0 | 0.07 | 22.80 | 0.03 | 1.514 | 7.87 | 0.23 | 3.6 | 96.2 | 0.2 | -3.84 | 0.85 | 0.83 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145171 | 5754 | 69 | 4648 | 424 | 0 | 0 | logfile |
✔ | 6WTH | 21896 | 2024-04-07 | 2020-05-02 | 3.06 | 3.56 | 3.08 | 3.4 | 0.002 | 0.56 | 0.0 | 0.05 | 7.45 | 0.00 | 2.217 | 4.94 | 0.84 | 2.2 | 97.8 | 0.0 | -3.50 | 0.72 | 0.75 | 3.88 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 12.46 | 0.00 | 2.192 | 7.18 | 2.24 | 3.5 | 96.5 | 0.0 | -0.74 | 0.60 | 0.77 | 0.87 | 3.70 | 11740 | 1183 | 12 | 0 | 422 | 0 | 0 | logfile |
✘ | 6HWH | 0289 | 2024-04-16 | 2018-10-12 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40632 | 4916 | 40 | 0 | 420 | 0 | 0 | logfile |
✘ | 6PNJ | 20397 | 2024-04-10 | 2019-07-02 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71511 | 6660 | 60 | 0 | 420 | 0 | 0 | logfile |