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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7W3G | 32279 | 2024-04-06 | 2021-11-25 | 3.2 | 4.83 | — | 2.8 | 0.004 | 0.76 | 0.0 | 0.05 | 14.17 | 0.01 | 2.137 | 5.57 | 0.31 | 6.1 | 93.8 | 0.1 | -0.51 | 0.81 | 0.72 | 2.07 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.12 | 0.00 | 2.050 | 10.43 | 0.95 | 6.1 | 93.8 | 0.1 | 0.95 | 0.80 | 0.83 | 0.76 | 1.77 | 110741 | 14074 | 55 | 0 | 40 | 0 | 0 | logfile |
✔ | 7W3C | 32277 | 2024-04-06 | 2021-11-25 | 3.4 | 4.55 | — | 3.0 | 0.004 | 0.75 | 0.0 | 0.05 | 13.70 | 0.01 | 2.077 | 5.67 | 0.13 | 6.4 | 93.5 | 0.1 | -0.85 | 0.82 | 0.79 | 2.02 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 15.03 | 0.00 | 2.057 | 10.44 | 0.87 | 6.5 | 93.5 | 0.1 | 0.75 | 0.38 | 0.83 | 0.77 | 1.59 | 110747 | 14074 | 55 | 0 | 42 | 0 | 0 | logfile |
✔ | 7W3J | 32282 | 2024-04-06 | 2021-11-25 | 3.5 | 4.46 | — | 3.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.85 | 0.01 | 1.739 | 6.46 | 0.55 | 6.9 | 93.0 | 0.1 | -1.22 | 0.83 | 0.81 | 1.76 | 3.0 | 0.002 | 0.62 | 0.0 | 0.04 | 15.92 | 0.00 | 2.073 | 11.52 | 1.02 | 6.4 | 93.5 | 0.0 | 0.34 | 0.79 | 0.87 | 0.85 | 1.49 | 110559 | 14071 | 55 | 0 | 7 | 0 | 0 | logfile |
✔ | 7W3i | 32281 | 2024-04-06 | 2021-11-25 | 3.5 | 4.43 | — | 2.9 | 0.005 | 0.82 | 0.0 | 0.05 | 14.74 | 0.01 | 1.702 | 5.71 | 0.26 | 6.7 | 93.2 | 0.1 | -1.17 | 0.79 | 0.72 | 1.86 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.26 | 0.00 | 1.973 | 12.84 | 1.78 | 6.7 | 93.3 | 0.0 | 0.02 | 1.07 | 0.82 | 0.77 | 1.55 | 110481 | 14054 | 55 | 0 | 7 | 0 | 0 | logfile |
✔ | 6FVW | 4322 | 2024-04-06 | 2018-03-05 | 4.5 | 4.60 | — | 4.6 | 0.035 | 3.52 | 888.0 | 0.20 | 17.66 | 0.03 | 0.436 | 3.52 | 2.98 | 5.7 | 92.3 | 2.0 | -2.29 | 0.50 | 0.54 | — | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.00 | 0.00 | 1.910 | 18.23 | 0.07 | 4.6 | 95.2 | 0.2 | -0.55 | 2.32 | 0.55 | 0.77 | — | 110594 | 14032 | 59 | 0 | 12 | 20 | 0 | logfile |
✔ | 6FVX | 4323 | 2024-04-06 | 2018-03-05 | 4.9 | 4.97 | — | 4.9 | 0.036 | 3.46 | 834.0 | 0.21 | 17.38 | 0.03 | 1.000 | 2.06 | 2.81 | 5.4 | 92.9 | 1.7 | -2.42 | 0.52 | 0.59 | — | 4.9 | 0.004 | 0.83 | 0.0 | 0.05 | 14.61 | 0.00 | 1.899 | 20.44 | 0.02 | 4.6 | 95.3 | 0.2 | -0.67 | 1.27 | 0.55 | 0.77 | — | 110471 | 14020 | 53 | 0 | 12 | 0 | 0 | logfile |
✔ | 6W1N | 21513 | 2024-04-05 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.18 | 0.00 | 2.112 | 12.42 | 2.20 | 3.1 | 96.9 | 0.0 | 0.78 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 8EQN | 28540 | 2024-04-05 | 2022-10-08 | 3.7 | 3.82 | 3.76 | 3.8 | 0.019 | 1.63 | 0.0 | 0.09 | 10.32 | 0.01 | 2.390 | 0.43 | 0.00 | 1.3 | 98.7 | 0.0 | 1.44 | 0.79 | 0.86 | 3.46 | 3.7 | 0.004 | 0.67 | 0.0 | 0.05 | 15.62 | 0.00 | 2.110 | 9.74 | 2.89 | 2.7 | 97.3 | 0.0 | 1.82 | 0.87 | 0.79 | 0.87 | 2.63 | 107700 | 13980 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2024-04-15 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.80 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.004 | 0.68 | 0.0 | 0.04 | 9.64 | 0.00 | 2.092 | 16.08 | 0.00 | 5.3 | 94.7 | 0.0 | 0.02 | 0.92 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 6ZLo | 11270 | 2024-04-16 | 2020-06-30 | 2.9 | 2.99 | 2.87 | 2.9 | 0.004 | 0.74 | 0.0 | 0.05 | 12.55 | 0.01 | 2.346 | 2.95 | 0.52 | 2.6 | 97.4 | 0.0 | -2.13 | 0.80 | 0.83 | 3.16 | 2.9 | 0.006 | 0.58 | 0.0 | 0.05 | 15.69 | 0.00 | 2.267 | 4.86 | 1.85 | 2.5 | 97.5 | 0.0 | 1.14 | 0.54 | 0.83 | 0.89 | 3.63 | 105060 | 13920 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W3B | 32276 | 2024-04-06 | 2021-11-25 | 3.6 | 4.26 | — | 3.0 | 0.003 | 0.79 | 0.0 | 0.05 | 13.94 | 0.01 | 2.122 | 5.53 | 0.12 | 6.3 | 93.6 | 0.1 | -0.88 | 0.79 | 0.73 | 1.63 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.36 | 0.00 | 2.023 | 11.96 | 1.10 | 6.5 | 93.4 | 0.1 | 0.27 | 0.79 | 0.81 | 0.76 | 1.37 | 109441 | 13915 | 54 | 0 | 33 | 0 | 0 | logfile |
✘ | 5GUP | 9539 | 2024-04-06 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2024-04-06 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.49 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 10.0 | 0.004 | 0.83 | 3.0 | 0.05 | 16.74 | 0.01 | 1.659 | 17.27 | 2.30 | 6.4 | 93.5 | 0.2 | -0.97 | 1.04 | 0.41 | 0.18 | 0.03 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 7W3M | 32284 | 2024-04-06 | 2021-11-25 | 3.5 | 4.51 | — | 3.0 | 0.003 | 0.78 | 0.0 | 0.05 | 14.17 | 0.01 | 1.953 | 5.95 | 0.14 | 6.1 | 93.8 | 0.1 | -1.11 | 0.79 | 0.75 | 1.86 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 15.33 | 0.00 | 2.061 | 11.56 | 0.76 | 6.3 | 93.7 | 0.0 | 0.45 | 0.38 | 0.82 | 0.77 | 1.74 | 109020 | 13879 | 53 | 0 | 5 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2024-04-06 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.52 | 0.01 | 1.402 | 24.31 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.003 | 0.75 | 0.0 | 0.04 | 16.64 | 0.00 | 2.033 | 14.85 | 1.87 | 5.6 | 94.2 | 0.2 | -0.50 | 1.16 | 0.50 | 0.30 | 0.41 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 5KMG | 8266 | 2024-04-06 | 2016-06-27 | 3.5 | 4.13 | — | 4.0 | 0.019 | 1.34 | 0.0 | 0.10 | 13.69 | 0.02 | 1.894 | 3.71 | 0.00 | 5.8 | 92.0 | 2.2 | -1.01 | 0.49 | 0.75 | 2.38 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 17.25 | 0.00 | 1.879 | 12.64 | 2.04 | 3.7 | 96.3 | 0.0 | 1.30 | 1.01 | 0.47 | 0.79 | 2.25 | 111594 | 13860 | 70 | 14 | 42 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2024-04-11 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.94 | 0.0 | 0.04 | 9.04 | 0.00 | 2.223 | 6.51 | 0.63 | 12.6 | 85.4 | 2.0 | -1.65 | 0.84 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2024-04-05 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2024-04-16 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.88 | 0.00 | 2.030 | 14.51 | 6.10 | 9.6 | 89.4 | 1.0 | -2.04 | 1.32 | 0.63 | 0.83 | 2.06 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SC7 | 25028 | 2024-04-05 | 2021-09-27 | 2.8 | 3.66 | — | 3.3 | 0.007 | 1.08 | 1.0 | 0.06 | 14.60 | 0.01 | 2.240 | 6.50 | 1.49 | 2.4 | 97.6 | 0.0 | -1.25 | 0.73 | 0.87 | 1.85 | 3.2 | 0.004 | 0.91 | 0.0 | 0.05 | 16.57 | 0.00 | 2.044 | 21.20 | 3.09 | 2.9 | 97.1 | 0.0 | 1.01 | 1.24 | 0.72 | 0.88 | 1.68 | 107930 | 13756 | 156 | 0 | 72 | 0 | 0 | logfile |