Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LiT	23385	2023-04-26	2021-01-27	2.53	2.69	—	2.8	0.008	0.76	0.0	0.05	13.58	0.00	2.309	1.69	0.44	3.9	96.1	0.0	0.35	0.71	0.85	4.23	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.168	2.50	1.36	3.3	96.7	0.0	0.89	1.75	0.73	0.88	3.70	126840	15480	60	0	60	0	0	logfile
✔	6WKV	21810	2023-04-26	2020-04-17	2.99	2.74	—	2.9	0.012	0.66	0.0	0.06	16.80	0.00	2.116	10.99	3.10	6.7	93.3	0.0	-4.68	0.81	0.85	3.88	2.9	0.004	0.61	0.0	0.04	18.38	0.00	2.132	4.53	1.55	3.0	97.0	0.0	-0.48	1.16	0.82	0.87	3.03	126600	15420	108	0	60	0	0	logfile
✔	7E80	31006	2023-04-22	2021-02-28	3.67	4.02	—	3.9	0.003	0.50	4.0	0.04	10.46	0.00	2.066	8.31	1.97	4.4	95.6	0.0	0.97	0.74	0.84	1.76	3.9	0.002	0.63	0.0	0.04	13.63	0.00	2.096	10.56	0.23	3.9	96.1	0.0	0.89	0.46	0.73	0.84	1.58	114468	15296	77	0	75	0	0	logfile
✘	7DCo	30637	2023-04-27	2020-10-26	2.5	2.59	—	2.6	0.010	1.11	8.0	0.08	13.06	0.01	2.079	5.90	1.87	4.4	95.1	0.5	-3.91	0.53	0.65	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129875	15294	91	556	24	1714	0	logfile
✔	8HR7	34962	2023-04-24	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	7PK6	13466	2023-04-24	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✘	5GKY	9518	2023-04-21	2016-07-07	3.8	4.18	—	4.0	0.017	1.70	19.0	0.10	11.29	0.01	1.789	19.04	0.51	5.8	91.8	2.5	-2.71	0.73	0.79	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111036	15068	12	0	4	0	0	logfile
✘	5GKZ	9519	2023-04-21	2016-07-07	4.0	4.10	—	4.0	0.019	1.71	36.0	0.11	11.29	0.01	1.755	15.04	0.51	6.5	91.2	2.3	-2.89	0.72	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GL0	9520	2023-04-21	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	6JiY	9837	2023-04-22	2019-02-24	3.9	4.05	—	3.9	0.008	1.06	1.0	0.05	15.49	0.01	2.203	7.76	0.47	12.2	87.5	0.2	-5.76	0.73	0.78	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115288	15056	20	0	32	0	0	logfile
✘	6Ji8	9833	2023-04-22	2019-02-20	3.6	3.80	—	3.7	0.010	1.26	8.0	0.06	11.98	0.01	2.196	8.60	1.03	10.5	89.0	0.5	-4.77	0.73	0.77	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115060	15024	16	0	4	0	0	logfile
✘	6Jii	9834	2023-04-22	2019-02-21	4.2	4.38	—	4.1	0.008	1.12	0.0	0.06	11.41	0.01	2.208	7.63	0.57	11.2	88.4	0.4	-4.07	0.78	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115028	15012	16	0	16	0	0	logfile
✔	7AS4	11888	2023-04-24	2020-10-26	4.13	7.60	4.43	3.3	0.013	2.07	101.0	0.12	16.75	0.01	1.851	7.04	3.73	5.2	94.7	0.1	-1.41	0.79	0.59	—	3.2	0.004	0.72	0.0	0.04	14.57	0.00	2.025	16.07	0.00	4.3	95.7	0.0	0.26	0.80	0.88	0.70	—	120779	14997	47	14	0	0	0	logfile
✔	6M2W	30067	2023-04-23	2020-03-01	3.8	2.59	3.89	2.6	0.006	1.08	0.0	0.05	15.58	0.01	2.276	3.96	3.59	3.1	96.9	0.0	-5.38	0.77	0.64	0.21	2.1	0.003	0.63	0.0	0.04	15.54	0.00	2.105	8.78	0.22	2.8	97.2	0.0	0.30	1.82	0.83	0.79	1.96	120452	14972	16	0	1828	0	0	logfile
✔	7SC9	25030	2023-04-23	2021-09-27	2.6	3.71	2.70	3.0	0.005	0.63	0.0	0.04	13.52	0.01	2.039	38.58	0.01	2.7	97.2	0.0	2.39	0.80	0.82	1.56	3.0	0.004	0.81	0.0	0.04	16.15	0.00	2.009	19.29	1.89	2.8	97.1	0.1	1.36	0.60	0.80	0.84	1.23	117262	14948	164	0	76	0	0	logfile
✔	6X33	22016	2023-04-22	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	6Q16	20556	2023-04-23	2019-08-02	4.1	4.11	—	4.1	0.007	1.05	0.0	0.06	14.24	0.01	2.214	3.99	0.67	3.6	96.4	0.0	-5.13	0.85	0.83	—	4.1	0.003	0.69	0.0	0.04	13.91	0.00	2.101	9.20	0.01	3.7	96.3	0.0	-0.13	0.76	0.86	0.84	—	118198	14787	93	0	0	0	0	logfile
✔	6X32	22015	2023-04-22	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	6X35	22018	2023-04-21	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	4UFT	2867	2023-04-23	2015-03-19	4.3	4.24	—	4.2	0.005	0.96	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.78	0.0	0.04	13.25	0.01	2.091	11.84	0.05	8.2	90.7	1.1	-2.58	1.93	0.59	0.79	—	119847	14703	78	234	0	0	0	logfile

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