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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8SET | 40428 | 2024-03-21 | 2023-04-10 | 3.42 | 4.38 | 3.59 | 3.3 | 0.006 | 1.03 | 0.0 | 0.06 | 14.78 | 0.01 | 2.173 | 5.88 | 2.98 | 3.0 | 96.9 | 0.1 | -0.29 | 0.85 | 0.80 | 0.82 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 15.03 | 0.00 | 2.061 | 16.29 | 0.93 | 4.0 | 96.0 | 0.0 | 0.54 | 1.42 | 0.87 | 0.84 | 1.00 | 143048 | 17940 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 8SES | 40427 | 2024-03-20 | 2023-04-10 | 3.98 | 4.76 | 4.20 | 3.9 | 0.006 | 1.14 | 4.0 | 0.06 | 14.83 | 0.01 | 2.179 | 7.41 | 3.51 | 5.1 | 94.8 | 0.2 | -0.30 | 0.84 | 0.83 | 0.21 | 3.9 | 0.005 | 0.79 | 1.0 | 0.04 | 15.08 | 0.00 | 2.042 | 24.03 | 1.28 | 5.5 | 94.5 | 0.0 | -0.13 | 1.40 | 0.84 | 0.85 | 0.16 | 142940 | 17936 | 12 | 4 | 4 | 0 | 0 | logfile |
✔ | 8SER | 40426 | 2024-03-20 | 2023-04-10 | 3.42 | 4.59 | 3.60 | 3.3 | 0.005 | 0.99 | 4.0 | 0.06 | 14.47 | 0.01 | 2.178 | 5.10 | 2.55 | 4.2 | 95.7 | 0.1 | -0.36 | 0.89 | 0.85 | 1.82 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 14.58 | 0.00 | 2.104 | 12.61 | 0.81 | 3.7 | 96.3 | 0.0 | 1.11 | 1.38 | 0.89 | 0.87 | 1.58 | 142952 | 17932 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 8SEQ | 40425 | 2024-03-20 | 2023-04-10 | 3.4 | 4.26 | 3.61 | 3.3 | 0.006 | 1.06 | 4.0 | 0.06 | 15.01 | 0.01 | 2.188 | 6.61 | 3.28 | 3.4 | 96.5 | 0.1 | -0.61 | 0.84 | 0.81 | 1.01 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 15.13 | 0.00 | 2.111 | 13.70 | 0.82 | 3.8 | 96.2 | 0.0 | 0.62 | 1.38 | 0.85 | 0.84 | 1.03 | 142952 | 17932 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 8SEo | 40423 | 2024-03-20 | 2023-04-10 | 3.92 | 5.00 | 4.14 | 3.8 | 0.005 | 1.06 | 0.0 | 0.06 | 14.83 | 0.01 | 2.203 | 7.19 | 3.56 | 3.1 | 96.8 | 0.1 | 0.13 | 0.86 | 0.83 | 0.42 | 3.8 | 0.003 | 0.74 | 0.0 | 0.04 | 14.78 | 0.00 | 2.126 | 19.80 | 1.17 | 4.5 | 95.5 | 0.0 | 0.34 | 0.54 | 0.86 | 0.84 | 0.49 | 143016 | 17932 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 8UXL | 42768 | 2024-03-21 | 2023-11-09 | 3.12 | 4.00 | — | 2.0 | 0.004 | 0.89 | 16.0 | 0.04 | 14.92 | 0.01 | 1.627 | 14.05 | 1.53 | 3.1 | 96.8 | 0.1 | 0.74 | 0.87 | 0.83 | 2.55 | 1.9 | 0.004 | 0.68 | 0.0 | 0.04 | 15.19 | 0.00 | 2.125 | 11.27 | 0.75 | 3.3 | 96.7 | 0.0 | 1.38 | 0.42 | 0.88 | 0.88 | 2.71 | 143500 | 17928 | 20 | 0 | 32 | 0 | 0 | logfile |
✔ | 8UXM | 42769 | 2024-03-21 | 2023-11-09 | 3.56 | 4.02 | — | 2.0 | 0.011 | 0.77 | 0.0 | 0.04 | 14.99 | 0.01 | 1.138 | 12.33 | 1.07 | 2.8 | 97.1 | 0.1 | 0.65 | 0.86 | 0.82 | 2.25 | 2.0 | 0.011 | 0.63 | 0.0 | 0.04 | 15.37 | 0.00 | 2.133 | 10.77 | 0.78 | 3.0 | 96.9 | 0.1 | 1.41 | 0.93 | 0.86 | 0.83 | 2.39 | 143464 | 17924 | 20 | 0 | 32 | 0 | 0 | logfile |
✔ | 8VJK | 43284 | 2024-03-21 | 2024-01-07 | 2.92 | 3.34 | 3.08 | 3.0 | 0.003 | 0.69 | 0.0 | 0.04 | 14.13 | 0.00 | 1.955 | 5.07 | 0.05 | 1.9 | 98.1 | 0.0 | 2.22 | 0.89 | 0.89 | 3.55 | 3.0 | 0.007 | 0.62 | 0.0 | 0.04 | 15.40 | 0.00 | 2.060 | 6.04 | 0.80 | 2.1 | 97.9 | 0.0 | 1.90 | 0.35 | 0.91 | 0.93 | 3.60 | 143248 | 17920 | 12 | 0 | 28 | 0 | 0 | logfile |
✔ | 7U9T | 26408 | 2024-03-21 | 2022-03-11 | 2.68 | 3.04 | — | 1.7 | 0.004 | 0.81 | 2.0 | 0.04 | 14.98 | 0.01 | 2.097 | 10.70 | 1.89 | 3.5 | 96.4 | 0.1 | 0.12 | 0.86 | 0.80 | 2.51 | 1.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.16 | 0.00 | 2.176 | 9.31 | 0.68 | 3.3 | 96.6 | 0.1 | 1.11 | 0.52 | 0.87 | 0.85 | 3.08 | 143236 | 17912 | 16 | 0 | 12 | 0 | 0 | logfile |
✔ | 7T0X | 25584 | 2024-03-24 | 2021-11-30 | 4.4 | 4.45 | — | 4.3 | 0.006 | 0.81 | 0.0 | 0.04 | 13.87 | 0.00 | 2.117 | 45.77 | 0.00 | 1.3 | 98.7 | 0.0 | -0.28 | 0.74 | 0.80 | — | 4.3 | 0.004 | 0.68 | 0.0 | 0.03 | 15.27 | 0.00 | 2.068 | 16.37 | 0.00 | 0.8 | 99.2 | 0.0 | 1.86 | 1.55 | 0.74 | 0.79 | — | 147840 | 17640 | 840 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i4M | 35175 | 2024-03-17 | 2023-01-19 | 3.81 | 4.11 | 3.85 | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 16.95 | 0.00 | 2.042 | 11.62 | 0.28 | 5.0 | 94.8 | 0.2 | 0.30 | 0.68 | 0.82 | 1.47 | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 17.55 | 0.00 | 2.132 | 10.52 | 3.79 | 5.5 | 94.3 | 0.1 | 0.51 | 1.76 | 0.68 | 0.83 | 1.46 | 134400 | 17436 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T65 | 25710 | 2024-03-17 | 2021-12-13 | 4.05 | 4.38 | 4.14 | 3.9 | 0.006 | 0.95 | 4.0 | 0.05 | 15.43 | 0.01 | 2.110 | 2.79 | 0.00 | 9.2 | 90.6 | 0.2 | -2.33 | 0.81 | 0.81 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 15.17 | 0.00 | 2.065 | 9.45 | 0.00 | 8.7 | 91.0 | 0.2 | -0.77 | 0.42 | 0.81 | 0.81 | — | 135328 | 17436 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7T64 | 25709 | 2024-03-17 | 2021-12-13 | 4.0 | 4.36 | 4.08 | 3.9 | 0.002 | 0.64 | 0.0 | 0.04 | 14.83 | 0.00 | 2.175 | 5.90 | 0.00 | 6.1 | 93.5 | 0.4 | -0.38 | 0.76 | 0.70 | — | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.24 | 0.00 | 2.131 | 10.40 | 1.81 | 8.2 | 91.6 | 0.2 | -0.09 | 0.51 | 0.77 | 0.73 | — | 134196 | 17416 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 7Aoi | 11845 | 2024-03-03 | 2020-10-14 | 3.5 | 3.35 | 3.41 | 3.3 | 0.003 | 0.48 | 0.0 | 0.04 | 12.47 | 0.00 | 1.900 | 6.20 | 0.62 | 3.4 | 96.6 | 0.0 | 1.79 | 0.78 | 0.82 | 2.93 | 3.3 | 0.004 | 0.64 | 2.0 | 0.04 | 16.38 | 0.00 | 1.894 | 11.58 | 3.15 | 3.6 | 96.4 | 0.0 | 1.00 | 1.28 | 0.81 | 0.84 | 2.74 | 156070 | 17411 | 90 | 758 | 10 | 0 | 0 | logfile |
✔ | 7U9Z | 26410 | 2024-03-19 | 2022-03-11 | 3.29 | 3.51 | — | 1.9 | 0.003 | 0.76 | 4.0 | 0.04 | 15.41 | 0.01 | 1.938 | 11.72 | 1.19 | 4.6 | 95.3 | 0.1 | 0.57 | 0.86 | 0.79 | 2.26 | 1.9 | 0.003 | 0.62 | 0.0 | 0.04 | 15.80 | 0.00 | 2.124 | 10.87 | 0.61 | 4.8 | 95.2 | 0.1 | 1.01 | 1.00 | 0.87 | 0.85 | 2.88 | 138688 | 17332 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 8UXG | 42763 | 2024-03-19 | 2023-11-09 | 3.08 | 3.56 | — | 2.1 | 0.003 | 0.74 | 0.0 | 0.04 | 15.50 | 0.01 | 2.011 | 10.23 | 1.27 | 2.3 | 97.7 | 0.0 | 1.03 | 0.84 | 0.82 | 2.79 | 1.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.56 | 0.00 | 2.166 | 8.60 | 0.40 | 2.7 | 97.2 | 0.0 | 1.59 | 0.39 | 0.86 | 0.86 | 3.04 | 138712 | 17324 | 12 | 0 | 16 | 0 | 0 | logfile |
✔ | 7U9Q | 26405 | 2024-03-18 | 2022-03-11 | 3.11 | 3.51 | — | 1.9 | 0.003 | 0.85 | 0.0 | 0.04 | 14.30 | 0.01 | 2.065 | 12.40 | 0.66 | 3.4 | 96.5 | 0.1 | -1.28 | 0.86 | 0.79 | 2.19 | 1.9 | 0.003 | 0.68 | 0.0 | 0.04 | 14.83 | 0.00 | 2.124 | 11.34 | 0.53 | 3.5 | 96.4 | 0.1 | 0.84 | 0.46 | 0.88 | 0.86 | 2.50 | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8UXE | 42761 | 2024-03-19 | 2023-11-09 | 3.53 | 3.86 | — | 2.2 | 0.004 | 0.74 | 0.0 | 0.04 | 15.07 | 0.01 | 2.079 | 13.47 | 0.79 | 3.1 | 96.8 | 0.1 | 0.78 | 0.84 | 0.82 | 2.54 | 2.0 | 0.002 | 0.58 | 0.0 | 0.04 | 15.48 | 0.00 | 2.129 | 10.83 | 0.47 | 3.0 | 96.9 | 0.1 | 1.32 | 0.32 | 0.84 | 0.82 | 2.47 | 138692 | 17324 | 12 | 0 | 16 | 0 | 0 | logfile |
✔ | 7U9X | 26409 | 2024-03-18 | 2022-03-11 | 2.58 | 2.84 | — | 1.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.38 | 0.00 | 2.080 | 9.25 | 0.11 | 2.3 | 97.7 | 0.0 | 1.30 | 0.87 | 0.83 | 3.55 | 1.7 | 0.005 | 0.67 | 0.0 | 0.04 | 15.32 | 0.00 | 2.079 | 8.17 | 0.55 | 3.1 | 96.9 | 0.0 | 1.53 | 0.41 | 0.88 | 0.87 | 4.08 | 138588 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8UQ2 | 42458 | 2024-03-18 | 2023-10-23 | 2.98 | 3.53 | — | 1.8 | 0.003 | 0.75 | 0.0 | 0.04 | 14.08 | 0.01 | 2.072 | 11.43 | 0.50 | 2.8 | 97.2 | 0.1 | 0.81 | 0.91 | 0.85 | 3.00 | 1.9 | 0.004 | 0.78 | 0.0 | 0.04 | 14.94 | 0.00 | 2.122 | 11.39 | 0.52 | 3.2 | 96.7 | 0.1 | 1.20 | 0.42 | 0.92 | 0.89 | 3.14 | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |