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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6H6F | 0150 | 2024-04-07 | 2018-07-27 | 3.72 | 2.83 | — | 3.6 | 0.020 | 1.68 | 1.0 | 0.09 | 10.88 | 0.01 | 2.182 | 1.08 | 0.00 | 1.7 | 98.1 | 0.2 | 0.96 | 0.83 | 0.77 | 1.63 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.46 | 0.00 | 2.086 | 11.81 | 2.04 | 2.6 | 97.4 | 0.0 | 1.38 | 0.89 | 0.84 | 0.78 | 1.43 | 114303 | 14388 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2024-04-06 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2024-04-06 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Ji0 | 9831 | 2024-04-06 | 2019-02-19 | 4.2 | 4.40 | — | 4.2 | 0.007 | 1.15 | 0.0 | 0.06 | 11.78 | 0.01 | 2.204 | 7.43 | 0.86 | 12.9 | 86.9 | 0.3 | -4.44 | 0.73 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109772 | 14332 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2024-04-06 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6JRR | 9879 | 2024-04-06 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.94 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2024-04-06 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.44 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6U5F | 20644 | 2024-04-05 | 2019-08-27 | 3.8 | 3.74 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.06 | 10.02 | 0.01 | 2.238 | 6.14 | 0.38 | 11.0 | 89.0 | 0.0 | -5.43 | 0.61 | 0.81 | 3.06 | 3.7 | 0.004 | 0.78 | 2.0 | 0.05 | 15.28 | 0.00 | 1.864 | 12.81 | 3.93 | 9.8 | 90.2 | 0.0 | -2.58 | 0.67 | 0.62 | 0.82 | 2.58 | 107550 | 14232 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H6E | 0149 | 2024-04-06 | 2018-07-27 | 3.95 | 3.43 | — | 3.8 | 0.021 | 1.74 | 1.0 | 0.10 | 10.97 | 0.01 | 1.834 | 1.64 | 0.01 | 1.9 | 97.9 | 0.3 | 0.48 | 0.79 | 0.80 | 1.58 | 3.7 | 0.004 | 0.73 | 0.0 | 0.04 | 16.28 | 0.00 | 2.081 | 16.39 | 3.01 | 3.2 | 96.7 | 0.1 | 0.85 | 1.89 | 0.79 | 0.82 | 1.59 | 112922 | 14231 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YN6 | 10850 | 2024-04-07 | 2020-04-10 | 3.28 | 3.66 | 3.42 | 3.7 | 0.008 | 0.93 | 0.0 | 0.06 | 12.85 | 0.01 | 2.225 | 7.92 | 0.81 | 4.4 | 95.6 | 0.0 | -1.34 | 0.70 | 0.80 | 2.33 | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 15.69 | 0.00 | 2.125 | 12.36 | 1.80 | 3.2 | 96.8 | 0.0 | 0.81 | 0.55 | 0.71 | 0.81 | 1.55 | 113760 | 14220 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RD4 | 4805 | 2024-04-05 | 2019-04-12 | 2.9 | 2.95 | — | 2.9 | 0.014 | 1.11 | 0.0 | 0.07 | 14.33 | 0.01 | 0.776 | 6.62 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.74 | 0.83 | 3.17 | 2.9 | 0.004 | 0.68 | 0.0 | 0.04 | 16.42 | 0.00 | 1.875 | 10.03 | 2.17 | 3.6 | 96.3 | 0.1 | 0.67 | 0.62 | 0.77 | 0.87 | 2.82 | 107552 | 14206 | 82 | 0 | 22 | 56 | 0 | logfile |
✘ | 5XTH | 6775 | 2024-04-07 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2024-04-07 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.96 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 6iCZ | 9645 | 2024-04-15 | 2018-09-07 | 3.0 | 3.12 | — | 3.1 | 0.015 | 1.44 | 14.0 | 0.10 | 15.57 | 0.01 | 1.549 | 8.29 | 1.39 | 5.8 | 93.4 | 0.8 | -2.81 | 0.53 | 0.64 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97900 | 14175 | 58 | 418 | 19 | 0 | 0 | logfile |
✔ | 8TEP | 41194 | 2024-04-06 | 2023-07-06 | 3.5 | 4.51 | 3.65 | 4.5 | 0.004 | 0.75 | 11.0 | 0.05 | 13.32 | 0.01 | 2.160 | 7.50 | 0.07 | 3.9 | 96.0 | 0.1 | -0.11 | 0.40 | 0.71 | 1.62 | 4.5 | 0.003 | 0.72 | 0.0 | 0.04 | 16.32 | 0.00 | 2.031 | 14.14 | 3.61 | 4.9 | 95.1 | 0.0 | -0.15 | 0.57 | 0.31 | 0.72 | 1.18 | 112987 | 14141 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W3K | 32283 | 2024-04-06 | 2021-11-25 | 3.6 | 4.78 | — | 3.0 | 0.004 | 0.82 | 0.0 | 0.05 | 14.42 | 0.01 | 1.743 | 5.88 | 0.18 | 6.0 | 93.9 | 0.1 | -1.19 | 0.80 | 0.74 | 1.77 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.78 | 0.00 | 2.110 | 13.13 | 1.21 | 6.2 | 93.7 | 0.1 | 0.22 | 0.45 | 0.85 | 0.80 | 1.54 | 110657 | 14090 | 53 | 0 | 5 | 0 | 0 | logfile |
✔ | 7W3A | 32275 | 2024-04-06 | 2021-11-25 | 3.5 | 4.33 | — | 3.0 | 0.004 | 0.81 | 0.0 | 0.05 | 14.64 | 0.01 | 1.801 | 5.71 | 0.38 | 6.7 | 93.2 | 0.1 | -1.11 | 0.83 | 0.80 | 1.73 | 3.0 | 0.005 | 0.66 | 0.0 | 0.04 | 15.84 | 0.00 | 1.968 | 12.83 | 1.27 | 7.4 | 92.5 | 0.1 | 0.22 | 0.40 | 0.85 | 0.84 | 1.54 | 110889 | 14090 | 56 | 0 | 41 | 0 | 0 | logfile |
✘ | 6AHD | 9624 | 2024-04-13 | 2018-08-17 | 3.8 | 3.84 | — | 3.7 | 0.011 | 1.38 | 2.0 | 0.12 | 17.05 | 0.01 | 1.805 | 14.26 | 2.52 | 7.4 | 91.7 | 0.9 | -3.55 | 0.51 | 0.52 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 85302 | 14082 | 65 | 531 | 3 | 0 | 0 | logfile |
✔ | 7W3F | 32278 | 2024-04-06 | 2021-11-25 | 3.3 | 4.49 | — | 3.0 | 0.003 | 0.74 | 0.0 | 0.05 | 13.77 | 0.01 | 2.190 | 5.42 | 0.15 | 6.2 | 93.7 | 0.1 | -0.80 | 0.83 | 0.80 | 1.91 | 3.0 | 0.004 | 0.60 | 0.0 | 0.04 | 14.91 | 0.00 | 2.021 | 11.19 | 0.85 | 6.7 | 93.3 | 0.0 | 0.90 | 0.36 | 0.86 | 0.85 | 1.78 | 110751 | 14074 | 55 | 0 | 42 | 0 | 0 | logfile |
✔ | 7W3G | 32279 | 2024-04-06 | 2021-11-25 | 3.2 | 4.83 | — | 2.8 | 0.004 | 0.76 | 0.0 | 0.05 | 14.17 | 0.01 | 2.137 | 5.57 | 0.31 | 6.1 | 93.8 | 0.1 | -0.51 | 0.81 | 0.72 | 2.07 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.12 | 0.00 | 2.050 | 10.43 | 0.95 | 6.1 | 93.8 | 0.1 | 0.95 | 0.80 | 0.83 | 0.76 | 1.77 | 110741 | 14074 | 55 | 0 | 40 | 0 | 0 | logfile |