Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CAM	16530	2023-08-21	2023-01-24	1.86	1.57	1.83	1.7	0.010	1.53	0.0	0.11	14.23	0.03	1.821	0.54	0.27	3.0	96.8	0.1	-1.28	0.64	0.76	6.57	1.6	0.005	0.88	0.0	0.05	14.56	0.01	1.757	7.16	1.42	2.3	97.6	0.0	0.01	0.34	0.73	0.82	6.32	86648	2767	65	2724	322	6113	0	logfile
✔	8AoX	15555	2023-08-21	2022-08-08	2.8	2.28	2.75	2.3	0.005	0.73	1.0	0.04	16.33	0.00	1.792	12.98	1.25	1.3	98.7	0.0	-1.25	0.64	0.74	2.88	2.3	0.003	0.58	0.0	0.04	16.56	0.00	2.081	11.94	2.18	1.9	98.1	0.0	-1.04	0.29	0.65	0.77	2.97	87816	10368	72	0	48	4848	0	logfile
✔	7A6A	11668	2023-08-20	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.59	0.0	0.04	15.31	0.00	2.163	2.66	1.82	1.8	98.2	0.0	4.55	0.44	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7PWG	13681	2023-08-10	2021-10-06	2.75	2.35	—	2.5	0.010	1.07	0.0	0.06	16.06	0.02	1.376	3.78	6.08	4.4	95.6	0.0	-2.19	0.76	0.88	4.64	2.5	0.007	0.93	0.0	0.05	16.61	0.01	1.664	4.15	3.60	3.8	96.2	0.0	-0.54	0.30	0.77	0.88	4.03	109151	5769	105	2722	294	4397	0	logfile
✔	6CVM	7770	2023-08-23	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.06	10.16	0.01	2.053	3.70	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.005	0.62	0.0	0.05	13.90	0.00	1.985	6.52	0.83	2.5	97.5	0.0	0.71	0.37	0.85	0.93	6.85	37062	4084	12	0	20	4194	0	logfile
✔	6Z9F	11122	2023-08-20	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.003	0.63	0.0	0.04	14.99	0.00	2.122	4.64	3.05	1.8	98.2	0.0	4.60	0.98	0.85	0.86	8.43	41020	4152	72	0	32	4172	0	logfile
✔	7R4X	14317	2023-08-19	2022-02-09	2.15	1.94	—	2.1	0.012	1.13	0.0	0.06	16.98	0.04	1.443	4.90	4.12	3.8	96.2	0.1	-0.66	0.70	0.73	4.07	2.0	0.005	1.06	0.0	0.04	17.40	0.01	1.810	12.10	2.57	3.6	96.4	0.0	0.26	0.92	0.77	0.85	4.42	77937	4792	77	1646	174	4117	0	logfile
✔	8G6X	29787	2023-08-23	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	2.1	0.005	0.81	0.0	0.04	15.23	0.01	1.777	6.96	3.37	3.9	96.0	0.1	-0.33	0.28	0.69	0.85	5.14	93873	3177	72	3037	252	3462	0	logfile
✔	8G6Y	29788	2023-08-22	2023-02-16	2.09	1.85	2.01	1.9	0.007	0.89	0.0	0.05	14.74	0.03	1.446	5.72	3.72	3.5	96.3	0.2	-1.60	0.73	0.86	6.08	2.0	0.006	0.94	0.0	0.05	15.01	0.01	1.694	5.60	2.44	3.6	96.3	0.1	-0.30	1.19	0.73	0.89	6.01	93683	3175	69	3037	250	3460	0	logfile
✔	8J5A	35984	2023-08-23	2023-04-21	1.19	1.12	1.22	1.2	0.014	1.48	0.0	0.08	13.93	0.01	1.560	8.49	3.21	0.6	99.4	0.0	3.37	0.51	0.66	8.67	1.2	0.003	0.57	0.0	0.03	14.11	0.00	1.975	14.59	2.56	1.8	98.2	0.0	5.37	0.22	0.69	0.82	8.60	56208	4128	24	0	24	3384	17040	logfile
✔	6LXV	30007	2023-08-10	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.46	0.00	2.149	4.16	0.92	2.3	97.7	0.0	1.03	0.92	0.79	0.91	6.13	54924	6448	24	0	16	2967	0	logfile
✔	6SAG	10130	2023-08-09	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	7QSM	14134	2023-08-17	2022-01-13	2.3	2.31	—	2.3	0.007	0.92	0.0	0.85	15.84	0.00	1.463	2.79	0.58	2.3	97.6	0.0	0.75	0.76	0.90	6.42	2.3	0.007	1.29	0.0	0.25	16.18	0.00	1.942	4.36	0.74	1.7	98.3	0.0	1.82	0.81	0.77	0.91	5.62	71640	8262	118	0	62	2774	0	logfile
✔	7K3W	22658	2023-08-24	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	20.58	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.004	0.67	0.0	0.04	14.88	0.00	2.032	2.26	0.00	1.8	98.2	0.0	4.02	0.24	0.75	0.82	9.16	39086	4128	72	0	382	2680	0	logfile
✘	7ZG7	14705	2023-08-24	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.06	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39086	4128	72	0	382	2680	0	logfile
✔	7K3V	22657	2023-08-24	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	21.25	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.05	14.91	0.01	1.971	1.78	0.00	1.2	98.8	0.0	3.72	0.35	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7SC8	25029	2023-08-10	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✘	7D1T	30547	2023-08-09	2020-09-15	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	8AUV	15674	2023-08-18	2022-08-25	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	131912	4773	72	1638	130	2372	56307	logfile
✔	8CU8	26996	2023-08-23	2022-05-16	1.91	2.52	1.91	2.2	0.005	0.65	0.0	0.05	13.91	0.01	2.043	0.74	0.00	0.6	99.4	0.0	1.28	0.87	0.93	5.94	2.2	0.003	0.53	0.0	0.04	16.47	0.00	1.989	1.18	0.00	0.6	99.4	0.0	5.71	0.29	0.88	0.94	5.13	35271	4032	72	0	24	2271	0	logfile

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