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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6J6N | 0691 | 2024-03-17 | 2019-01-15 | 3.86 | 3.99 | — | 3.8 | 0.008 | 1.02 | 1.0 | 0.09 | 17.31 | 0.01 | 1.820 | 15.60 | 2.51 | 5.1 | 94.2 | 0.8 | -3.41 | 0.60 | 0.63 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78937 | 8982 | 47 | 544 | 14 | 0 | 0 | logfile |
✘ | 6J6H | 0687 | 2024-03-17 | 2019-01-15 | 3.6 | 3.74 | — | 3.6 | 0.008 | 0.97 | 2.0 | 0.09 | 17.34 | 0.01 | 1.805 | 16.37 | 2.68 | 4.4 | 95.1 | 0.5 | -3.20 | 0.62 | 0.67 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76847 | 8644 | 47 | 551 | 14 | 0 | 0 | logfile |
✘ | 6PLT | 20375 | 2024-03-16 | 2019-07-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14445 | 1725 | 15 | 0 | 60 | 0 | 0 | logfile |
✘ | 7S6K | 24878 | 2024-03-21 | 2021-09-14 | 3.4 | 3.64 | 3.40 | 3.6 | 0.020 | 1.79 | 0.0 | 0.11 | 9.77 | 0.01 | 2.392 | 0.89 | 0.00 | 3.4 | 96.6 | 0.0 | 0.43 | 0.80 | 0.82 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30903 | 3885 | 24 | 0 | 45 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2024-03-11 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.44 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6K61 | 9918 | 2024-03-25 | 2019-05-31 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49283 | 4542 | 44 | 0 | 259 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2024-03-21 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✘ | 6iD1 | 9647 | 2024-03-17 | 2018-09-07 | 2.86 | 2.99 | — | 3.0 | 0.009 | 1.35 | 22.0 | 0.10 | 16.99 | 0.01 | 1.603 | 16.93 | 3.66 | 6.6 | 92.5 | 0.9 | -2.72 | 0.61 | 0.64 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79882 | 10720 | 49 | 399 | 16 | 0 | 0 | logfile |
✘ | 5TAV | 8386 | 2024-03-14 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.84 | 0.01 | 1.373 | 4.75 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 7Z15 | 14441 | 2024-03-25 | 2022-02-24 | 1.93 | 2.40 | 1.98 | 2.3 | 0.012 | 1.01 | 9.0 | 0.06 | 15.88 | 0.01 | 1.723 | 3.87 | 0.83 | 1.6 | 98.4 | 0.0 | 1.32 | 0.83 | 0.86 | 6.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46112 | 2888 | 32 | 0 | 16 | 1171 | 22357 | logfile |
✘ | 7SH2 | 25122 | 2024-03-18 | 2021-10-07 | 3.23 | 3.55 | — | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 15.29 | 0.00 | 2.135 | 7.83 | 0.04 | 4.4 | 95.6 | 0.0 | 0.45 | 0.69 | 0.68 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20933 | 2545 | 15 | 23 | 9 | 0 | 0 | logfile |
✘ | 6iCZ | 9645 | 2024-03-20 | 2018-09-07 | 3.0 | 3.12 | — | 3.1 | 0.015 | 1.44 | 14.0 | 0.10 | 15.57 | 0.01 | 1.549 | 8.29 | 1.39 | 5.8 | 93.4 | 0.8 | -2.81 | 0.53 | 0.64 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97900 | 14175 | 58 | 418 | 19 | 0 | 0 | logfile |
✘ | 5YLZ | 6839 | 2024-03-17 | 2017-10-20 | 3.6 | 3.71 | — | 3.7 | 0.013 | 1.68 | 60.0 | 0.11 | 17.76 | 0.01 | 1.581 | 22.37 | 4.17 | 11.6 | 86.4 | 2.0 | -4.62 | 0.55 | 0.59 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76247 | 9095 | 49 | 373 | 14 | 0 | 0 | logfile |
✘ | 7WFE | 32463 | 2024-03-23 | 2021-12-26 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35123 | 3216 | 30 | 0 | 205 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2024-03-11 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2024-03-11 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 15.15 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2024-03-11 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 20.07 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 8DDU | 27342 | 2024-03-22 | 2022-06-19 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 5WSG | 6684 | 2024-03-17 | 2016-12-07 | 4.0 | 4.08 | — | 4.0 | 0.015 | 1.47 | 46.0 | 0.08 | 16.80 | 0.01 | 1.580 | 27.87 | 1.96 | 12.5 | 85.9 | 1.6 | -4.87 | 0.46 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76730 | 8620 | 51 | 376 | 883 | 0 | 0 | logfile |
✘ | 8DH6 | 27430 | 2024-03-15 | 2022-06-25 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12901 | 1560 | 16 | 0 | 17 | 0 | 0 | logfile |