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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8GF5 | 29978 | 2023-08-15 | 2023-03-07 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19127 | 2515 | 9 | 0 | 3 | 0 | 0 | logfile |
✘ | 6VVX | 21406 | 2023-08-20 | 2020-02-18 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29858 | 3508 | 12 | 128 | 4 | 0 | 0 | logfile |
✘ | 6WCZ | 21618 | 2023-08-11 | 2020-03-31 | 4.0 | 4.24 | — | 4.0 | 0.009 | 1.22 | 0.0 | 0.06 | 12.53 | 0.01 | 2.085 | 14.60 | 2.55 | 12.9 | 87.1 | 0.0 | -4.79 | 0.82 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9894 | 1231 | 2 | 0 | 2 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2023-08-17 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.21 | 0.00 | 1.956 | 17.39 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2023-08-13 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 8H0X | 34417 | 2023-08-18 | 2022-09-30 | 2.57 | 2.80 | 2.62 | 2.7 | 0.008 | 0.93 | 0.0 | 0.06 | 12.74 | 0.01 | 2.257 | 1.76 | 1.11 | 3.3 | 96.7 | 0.0 | -0.82 | 0.81 | 0.86 | 3.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25122 | 3117 | 6 | 0 | 48 | 0 | 0 | logfile |
✘ | 7oGR | 12886 | 2023-08-13 | 2021-05-07 | 3.0 | 3.10 | 2.89 | 3.1 | 0.003 | 0.69 | 0.0 | 0.05 | 13.65 | 0.01 | 2.309 | 3.41 | 0.00 | 5.2 | 94.8 | 0.0 | -4.69 | 0.68 | 0.80 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14135 | 1775 | 7 | 0 | 1 | 0 | 0 | logfile |
✘ | 6VoY | 21301 | 2023-08-15 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.39 | 0.01 | 1.583 | 35.03 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✘ | 6PLV | 20377 | 2023-08-13 | 2019-07-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14655 | 1725 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 5ZJi | 6932 | 2023-08-26 | 2018-03-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44708 | 4087 | 40 | 0 | 271 | 0 | 0 | logfile |
✘ | 7XSQ | 33431 | 2023-08-14 | 2022-05-15 | 2.88 | 2.17 | 2.83 | 2.1 | 0.009 | 0.93 | 3.0 | 0.06 | 17.11 | 0.01 | 2.157 | 2.60 | 2.74 | 6.1 | 93.8 | 0.1 | -2.88 | 0.77 | 0.75 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16573 | 1967 | 4 | 34 | 4 | 0 | 0 | logfile |
✘ | 7LUM | 23522 | 2023-08-12 | 2021-02-22 | 4.5 | 4.68 | — | 4.6 | 0.007 | 0.85 | 0.0 | 0.05 | 14.02 | 0.00 | 1.970 | 26.15 | 0.00 | 7.5 | 92.3 | 0.2 | -0.70 | 0.79 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63978 | 8374 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KDV | 22830 | 2023-08-27 | 2020-10-09 | 4.59 | 8.08 | 5.28 | 6.0 | 0.005 | 0.85 | 0.0 | 0.05 | 12.44 | 0.01 | 2.109 | 12.96 | 0.98 | 5.4 | 94.2 | 0.4 | -1.39 | 0.88 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51696 | 6312 | 42 | 0 | 72 | 0 | 0 | logfile |
✘ | 7XYA | 33515 | 2023-08-19 | 2022-06-01 | 3.3 | 3.39 | 3.24 | 3.2 | 0.004 | 0.68 | 1.0 | 0.04 | 18.79 | 0.00 | 1.962 | 11.59 | 1.00 | 4.0 | 95.9 | 0.0 | -0.19 | 0.81 | 0.84 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3479 | 11 | 126 | 1 | 0 | 0 | logfile |
✘ | 6PSW | 20466 | 2023-08-22 | 2019-07-13 | 3.7 | 3.46 | — | 3.5 | 0.008 | 0.89 | 0.0 | 0.05 | 18.69 | 0.00 | 1.987 | 42.40 | 0.40 | 11.4 | 88.4 | 0.2 | -4.03 | 0.69 | 0.78 | 1.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32695 | 3831 | 13 | 124 | 6 | 0 | 0 | logfile |
✘ | 7XVE | 33484 | 2023-08-13 | 2022-05-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13659 | 1569 | 8 | 0 | 42 | 0 | 0 | logfile |
✘ | 5LZE | 4125 | 2023-08-31 | 2016-09-29 | 3.5 | 3.59 | 3.51 | 3.5 | 0.012 | 1.24 | 14.0 | 0.08 | 14.19 | 0.02 | 2.158 | 3.96 | 0.72 | 7.7 | 90.1 | 2.2 | -3.34 | 0.76 | 0.87 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148018 | 5817 | 59 | 4782 | 2 | 0 | 0 | logfile |
✘ | 6VVY | 21407 | 2023-08-20 | 2020-02-18 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30033 | 3516 | 12 | 130 | 4 | 0 | 0 | logfile |
✘ | 6U9W | 20703 | 2023-08-19 | 2019-09-09 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26919 | 1686 | 12 | 3 | 42 | 0 | 12885 | logfile |
✘ | 5WVE | 6690 | 2023-08-19 | 2016-12-24 | 4.4 | 4.90 | — | 5.1 | 0.008 | 1.34 | 7.0 | 0.08 | 19.34 | 0.01 | 1.493 | 69.05 | 16.86 | 7.1 | 89.5 | 3.4 | -0.75 | 0.49 | 0.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78605 | 9766 | 39 | 0 | 21 | 0 | 0 | logfile |