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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6KMX | 0727 | 2024-04-07 | 2019-08-01 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✘ | 6VL5 | 21230 | 2024-04-09 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 11.99 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 7TM0 | 25992 | 2024-04-13 | 2022-01-19 | 3.1 | 3.24 | 3.21 | 3.2 | 0.010 | 1.37 | 0.0 | 0.08 | 8.59 | 0.01 | 2.264 | 1.47 | 0.17 | 2.4 | 97.6 | 0.0 | 0.62 | 0.73 | 0.76 | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27963 | 4401 | 19 | 0 | 52 | 0 | 0 | logfile |
✘ | 5MGP | 3508 | 2024-04-17 | 2016-11-21 | 3.1 | 3.19 | — | 3.1 | 0.007 | 0.91 | 0.0 | 0.05 | 22.76 | 0.01 | 2.151 | 3.98 | 0.59 | 9.0 | 90.7 | 0.3 | -4.84 | 0.81 | 0.85 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147155 | 6081 | 56 | 4642 | 0 | 0 | 0 | logfile |
✘ | 7X6Q | 33025 | 2024-04-07 | 2022-03-08 | 4.5 | 4.41 | 4.61 | 4.3 | 0.009 | 0.73 | 0.0 | 0.06 | 9.96 | 0.00 | 2.197 | 0.93 | 0.01 | 3.2 | 96.7 | 0.2 | -0.87 | 0.78 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64472 | 8440 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BAJ | 7074 | 2024-04-12 | 2017-10-13 | 3.2 | 3.67 | — | 3.6 | 0.008 | 1.40 | 0.0 | 0.06 | 16.65 | 0.01 | 2.131 | 6.76 | 1.74 | 6.6 | 93.0 | 0.4 | -4.66 | 0.60 | 0.79 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24318 | 3042 | 7 | 0 | 42 | 1 | 0 | logfile |
✘ | 3JBW | 6489 | 2024-04-16 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.90 | 0.01 | 1.977 | 22.69 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✘ | 6R91 | 4765 | 2024-04-16 | 2019-04-02 | 4.1 | 5.15 | — | 5.0 | 0.006 | 1.01 | 0.0 | 0.05 | 23.87 | 0.01 | 2.021 | 3.55 | 0.65 | 4.6 | 95.0 | 0.5 | -0.83 | 0.64 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40540 | 1969 | 12 | 290 | 0 | 0 | 19063 | logfile |
✘ | 7NK9 | 12434 | 2024-04-10 | 2021-02-17 | 2.9 | 3.29 | — | 3.2 | 0.003 | 0.50 | 0.0 | 0.04 | 13.03 | 0.00 | 2.087 | 6.80 | 0.00 | 2.9 | 97.1 | 0.0 | 1.61 | 0.68 | 0.86 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18081 | 1225 | 14 | 0 | 0 | 0 | 9158 | logfile |
✘ | 7YDY | 33760 | 2024-04-14 | 2022-07-04 | 4.75 | 4.05 | 4.60 | 4.0 | 0.002 | 0.45 | 0.0 | 0.04 | 10.39 | 0.00 | 2.253 | 5.17 | 0.44 | 3.1 | 96.9 | 0.0 | -3.89 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28760 | 3638 | 14 | 0 | 36 | 0 | 0 | logfile |
✘ | 6Mi8 | 9126 | 2024-04-06 | 2018-09-19 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7139 | 911 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7E2Z | 30973 | 2024-04-06 | 2021-02-07 | 3.1 | 3.34 | — | 3.4 | 0.009 | 1.05 | 0.0 | 0.22 | 14.20 | 0.01 | 2.160 | 5.36 | 0.00 | 1.6 | 98.4 | 0.0 | 2.35 | 0.57 | 0.74 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6997 | 870 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7DCC | 30635 | 2024-04-15 | 2020-10-24 | 4.3 | 4.77 | — | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 7.38 | 0.00 | 2.279 | 3.10 | 1.39 | 2.3 | 97.7 | 0.0 | -4.06 | 0.73 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35019 | 4485 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2024-04-14 | 2019-02-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 7XTA | 33444 | 2024-04-09 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17478 | 1115 | 5 | 0 | 1 | 0 | 8707 | logfile |
✘ | 6ZKC | 11244 | 2024-04-09 | 2020-06-30 | 3.1 | 3.23 | — | 3.2 | 0.008 | 1.02 | 0.0 | 1.02 | 12.40 | 0.01 | 2.216 | 5.53 | 0.10 | 4.2 | 95.8 | 0.0 | -3.11 | 0.66 | 0.83 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67967 | 8227 | 71 | 0 | 45 | 0 | 0 | logfile |
✘ | 6G2H | 4343 | 2024-04-15 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.05 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✘ | 8C02 | 16353 | 2024-04-05 | 2022-12-15 | 4.09 | 4.26 | 4.03 | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 13.16 | 0.01 | 2.225 | 19.86 | 0.44 | 4.1 | 95.9 | 0.0 | 1.51 | 0.58 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4242 | 549 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QHM | 13976 | 2024-04-14 | 2021-12-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94633 | 5886 | 67 | 0 | 88 | 416 | 45103 | logfile |
✘ | 6oPC | 20149 | 2024-04-14 | 2019-04-24 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30015 | 4455 | 13 | 0 | 48 | 0 | 0 | logfile |